RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 IL13P35225 146 aa23.69■■□□□ 1.38
ECHDC1-216ENST00000479525 MTHFSP49914 203 aa23.69■■□□□ 1.38
ECHDC1-216ENST00000479525 PLEKHO1Q53GL0 409 aaPredicted RBP23.69■■□□□ 1.38
ECHDC1-216ENST00000479525 ATP6V1AP38606 617 aa23.68■■□□□ 1.38
ECHDC1-216ENST00000479525 PER1O15534 1290 aaPredicted RBP23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 HMOX1P09601 288 aa23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 SLC4A9Q96Q91 983 aa23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 RBM42Q9BTD8 480 aaKnown RBP23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 COL5A3P25940 1745 aaPredicted RBP23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 MAP3K5Q99683 1374 aa23.67■■□□□ 1.38
ECHDC1-216ENST00000479525 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.66■■□□□ 1.38
ECHDC1-216ENST00000479525 GPR162Q16538 588 aa23.66■■□□□ 1.38
ECHDC1-216ENST00000479525 MYH14Q7Z406 1995 aaKnown RBP23.65■■□□□ 1.38
ECHDC1-216ENST00000479525 GNPATO15228 680 aa23.65■■□□□ 1.38
ECHDC1-216ENST00000479525 WWC3Q9ULE0 1092 aa23.65■■□□□ 1.38
ECHDC1-216ENST00000479525 KDRP35968 1356 aa23.64■■□□□ 1.37
ECHDC1-216ENST00000479525 CABP4P57796 275 aa23.64■■□□□ 1.37
ECHDC1-216ENST00000479525 C1orf141Q5JVX7 400 aa23.63■■□□□ 1.37
ECHDC1-216ENST00000479525 DCAF5Q96JK2 942 aa23.63■■□□□ 1.37
ECHDC1-216ENST00000479525 TJP1Q07157 1748 aa23.61■■□□□ 1.37
ECHDC1-216ENST00000479525 ERVV-2B6SEH9 535 aa23.61■■□□□ 1.37
ECHDC1-216ENST00000479525 AMOTQ4VCS5 1084 aa23.61■■□□□ 1.37
ECHDC1-216ENST00000479525 C4AP0C0L4 1744 aa23.6■■□□□ 1.37
ECHDC1-216ENST00000479525 PTCD1O75127 700 aaKnown RBP23.6■■□□□ 1.37
ECHDC1-216ENST00000479525 HSP90AB1P08238 724 aaKnown RBP23.6■■□□□ 1.37
ECHDC1-216ENST00000479525 NFATC2IPQ8NCF5 419 aa23.6■■□□□ 1.37
ECHDC1-216ENST00000479525 FLAD1Q8NFF5 587 aa23.59■■□□□ 1.37
ECHDC1-216ENST00000479525 ZNF831Q5JPB2 1677 aa23.58■■□□□ 1.37
ECHDC1-216ENST00000479525 YBX3P16989 372 aaKnown RBP eCLIP23.58■■□□□ 1.37
ECHDC1-216ENST00000479525 LGR6Q9HBX8 967 aa23.58■■□□□ 1.37
ECHDC1-216ENST00000479525 COL3A1P02461 1466 aaPredicted RBP23.57■■□□□ 1.36
ECHDC1-216ENST00000479525 SSFA2P28290 1259 aa23.57■■□□□ 1.36
ECHDC1-216ENST00000479525 PLEKHG2Q9H7P9 1386 aa23.57■■□□□ 1.36
ECHDC1-216ENST00000479525 DIAPH1O60610 1272 aaKnown RBP23.55■■□□□ 1.36
ECHDC1-216ENST00000479525 ZNF784Q8NCA9 323 aaPredicted RBP23.55■■□□□ 1.36
ECHDC1-216ENST00000479525 N4BP2Q86UW6 1770 aaPredicted RBP23.55■■□□□ 1.36
ECHDC1-216ENST00000479525 U2SURPO15042 1029 aaKnown RBP23.53■■□□□ 1.36
ECHDC1-216ENST00000479525 MTHFSDQ2M296 383 aaKnown RBP23.53■■□□□ 1.36
ECHDC1-216ENST00000479525 SLC39A6Q13433 755 aa23.52■■□□□ 1.36
ECHDC1-216ENST00000479525 AKAP4Q5JQC9 854 aa23.52■■□□□ 1.36
ECHDC1-216ENST00000479525 RTCBQ9Y3I0 505 aaKnown RBP23.52■■□□□ 1.36
ECHDC1-216ENST00000479525 CICQ96RK0 1608 aaPredicted RBP23.51■■□□□ 1.35
ECHDC1-216ENST00000479525 RNMTO43148 476 aaKnown RBP23.5■■□□□ 1.35
ECHDC1-216ENST00000479525 ARHGEF1Q92888 912 aaKnown RBP23.5■■□□□ 1.35
ECHDC1-216ENST00000479525 ADAMTS7Q9UKP4 1686 aa23.49■■□□□ 1.35
ECHDC1-216ENST00000479525 MMP10P09238 476 aa23.49■■□□□ 1.35
ECHDC1-216ENST00000479525 TRAPPC3LQ5T215 181 aa23.49■■□□□ 1.35
ECHDC1-216ENST00000479525 KIAA1551Q9HCM1 1747 aa23.49■■□□□ 1.35
ECHDC1-216ENST00000479525 CRKLP46109 303 aaKnown RBP23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 SLC52A2Q9HAB3 445 aa23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 SRP68Q9UHB9 627 aaKnown RBP23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 CD2APQ9Y5K6 639 aa23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 MRC1P22897 1456 aa23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 CNTNAP4Q9C0A0 1308 aa23.48■■□□□ 1.35
ECHDC1-216ENST00000479525 HMGB2P26583 209 aaKnown RBP23.47■■□□□ 1.35
ECHDC1-216ENST00000479525 DNAJC10Q8IXB1 793 aa23.47■■□□□ 1.35
ECHDC1-216ENST00000479525 NPC1L1Q9UHC9 1359 aa23.46■■□□□ 1.35
ECHDC1-216ENST00000479525 KCPQ6ZWJ8 1503 aa23.46■■□□□ 1.35
ECHDC1-216ENST00000479525 KIF13BQ9NQT8 1826 aa23.46■■□□□ 1.35
ECHDC1-216ENST00000479525 RPS6KA4O75676 772 aa23.45■■□□□ 1.34
ECHDC1-216ENST00000479525 SIPA1L3O60292 1781 aaPredicted RBP23.45■■□□□ 1.34
ECHDC1-216ENST00000479525 UBR2Q8IWV8 1755 aa23.45■■□□□ 1.34
ECHDC1-216ENST00000479525 RFC4P35249 363 aa23.44■■□□□ 1.34
ECHDC1-216ENST00000479525 RC3H1Q5TC82 1133 aaKnown RBP23.44■■□□□ 1.34
ECHDC1-216ENST00000479525 GYS1P13807 737 aa23.43■■□□□ 1.34
ECHDC1-216ENST00000479525 INTS5Q6P9B9 1019 aaKnown RBP23.4■■□□□ 1.34
ECHDC1-216ENST00000479525 PXDNLA1KZ92 1463 aa23.39■■□□□ 1.33
ECHDC1-216ENST00000479525 GRIN3BO60391 1043 aa23.39■■□□□ 1.33
ECHDC1-216ENST00000479525 PPP2R1AP30153 589 aa23.39■■□□□ 1.33
ECHDC1-216ENST00000479525 FKBP8Q14318 412 aa23.39■■□□□ 1.33
ECHDC1-216ENST00000479525 PHACTR3Q96KR7 559 aa23.39■■□□□ 1.33
ECHDC1-216ENST00000479525 BRCA1P38398 1863 aaKnown RBP23.38■■□□□ 1.33
ECHDC1-216ENST00000479525 ADRA2BP18089 450 aa23.38■■□□□ 1.33
ECHDC1-216ENST00000479525 PRKAR2BP31323 418 aa23.38■■□□□ 1.33
ECHDC1-216ENST00000479525 AFDNP55196 1824 aaKnown RBP23.37■■□□□ 1.33
ECHDC1-216ENST00000479525 A0A0G2JLW4 131 aa23.37■■□□□ 1.33
ECHDC1-216ENST00000479525 IL17REQ8NFR9 667 aa23.37■■□□□ 1.33
ECHDC1-216ENST00000479525 CYP19A1P11511 503 aaPredicted RBP23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 NLGN1Q8N2Q7 840 aa23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 RSPH6AQ9H0K4 717 aa23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 CCDC87Q9NVE4 849 aa23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 ZBTB1Q9Y2K1 713 aa23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 C10orf71Q711Q0 1435 aa23.36■■□□□ 1.33
ECHDC1-216ENST00000479525 USP42Q9H9J4 1324 aaKnown RBP23.35■■□□□ 1.33
ECHDC1-216ENST00000479525 DDR1Q08345 913 aa23.35■■□□□ 1.33
ECHDC1-216ENST00000479525 CFAP53Q96M91 514 aa23.35■■□□□ 1.33
ECHDC1-216ENST00000479525 PARP3Q9Y6F1 533 aa23.35■■□□□ 1.33
ECHDC1-216ENST00000479525 GNAT3A8MTJ3 354 aa23.34■■□□□ 1.33
ECHDC1-216ENST00000479525 USPL1Q5W0Q7 1092 aa23.34■■□□□ 1.33
ECHDC1-216ENST00000479525 ZNF526Q8TF50 670 aaPredicted RBP23.34■■□□□ 1.33
ECHDC1-216ENST00000479525 SOS1Q07889 1333 aaPredicted RBP23.33■■□□□ 1.33
ECHDC1-216ENST00000479525 DLG5Q8TDM6 1919 aa23.33■■□□□ 1.33
ECHDC1-216ENST00000479525 U2AF1L5P0DN76 240 aaPredicted RBP23.33■■□□□ 1.33
ECHDC1-216ENST00000479525 U2AF1Q01081 240 aaKnown RBP eCLIP23.33■■□□□ 1.33
ECHDC1-216ENST00000479525 ATP10DQ9P241 1426 aa23.32■■□□□ 1.32
ECHDC1-216ENST00000479525 KCNQ3O43525 872 aa23.32■■□□□ 1.32
ECHDC1-216ENST00000479525 DPEP1P16444 411 aa23.32■■□□□ 1.32
ECHDC1-216ENST00000479525 CANXP27824 592 aaKnown RBP23.32■■□□□ 1.32
ECHDC1-216ENST00000479525 TEFQ10587 303 aa23.32■■□□□ 1.32
ECHDC1-216ENST00000479525 GAS2L2Q8NHY3 880 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms