RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 ITPK1Q13572 414 aa18.16■□□□□ 0.5
VCL-205ENST00000478896 HSP90AB1P08238 724 aaKnown RBP18.15■□□□□ 0.5
VCL-205ENST00000478896 ATG3Q9NT62 314 aa18.15■□□□□ 0.5
VCL-205ENST00000478896 PLEKHO1Q53GL0 409 aaPredicted RBP18.14■□□□□ 0.49
VCL-205ENST00000478896 MORC1Q86VD1 984 aa18.14■□□□□ 0.49
VCL-205ENST00000478896 CCER1Q8TC90 406 aaPredicted RBP18.14■□□□□ 0.49
VCL-205ENST00000478896 RBM42Q9BTD8 480 aaKnown RBP18.14■□□□□ 0.49
VCL-205ENST00000478896 WWC3Q9ULE0 1092 aa18.14■□□□□ 0.49
VCL-205ENST00000478896 ZNF530Q6P9A1 599 aaPredicted RBP18.13■□□□□ 0.49
VCL-205ENST00000478896 DCAF5Q96JK2 942 aa18.13■□□□□ 0.49
VCL-205ENST00000478896 KDRP35968 1356 aa18.13■□□□□ 0.49
VCL-205ENST00000478896 ERVV-2B6SEH9 535 aa18.12■□□□□ 0.49
VCL-205ENST00000478896 GOLGB1Q14789 3259 aaKnown RBP18.12■□□□□ 0.49
VCL-205ENST00000478896 ZNF831Q5JPB2 1677 aa18.12■□□□□ 0.49
VCL-205ENST00000478896 COL5A3P25940 1745 aaPredicted RBP18.12■□□□□ 0.49
VCL-205ENST00000478896 AMOTQ4VCS5 1084 aa18.11■□□□□ 0.49
VCL-205ENST00000478896 C1orf141Q5JVX7 400 aa18.11■□□□□ 0.49
VCL-205ENST00000478896 RTCBQ9Y3I0 505 aaKnown RBP18.11■□□□□ 0.49
VCL-205ENST00000478896 KNSTRNQ9Y448 316 aa18.11■□□□□ 0.49
VCL-205ENST00000478896 ATP10DQ9P241 1426 aa18.11■□□□□ 0.49
VCL-205ENST00000478896 KDM6AO15550 1401 aaPredicted RBP18.1■□□□□ 0.49
VCL-205ENST00000478896 CABP4P57796 275 aa18.1■□□□□ 0.49
VCL-205ENST00000478896 TRAPPC3LQ5T215 181 aa18.09■□□□□ 0.49
VCL-205ENST00000478896 CICQ96RK0 1608 aaPredicted RBP18.09■□□□□ 0.49
VCL-205ENST00000478896 MMP10P09238 476 aa18.08■□□□□ 0.48
VCL-205ENST00000478896 MTHFSP49914 203 aa18.08■□□□□ 0.48
VCL-205ENST00000478896 AEBP1Q8IUX7 1158 aa18.08■□□□□ 0.48
VCL-205ENST00000478896 C4AP0C0L4 1744 aa18.07■□□□□ 0.48
VCL-205ENST00000478896 SULT6B1Q6IMI4 303 aa18.07■□□□□ 0.48
VCL-205ENST00000478896 GPBP1L1Q9HC44 474 aaPredicted RBP18.07■□□□□ 0.48
VCL-205ENST00000478896 KIF13BQ9NQT8 1826 aa18.07■□□□□ 0.48
VCL-205ENST00000478896 CNTNAP4Q9C0A0 1308 aa18.06■□□□□ 0.48
VCL-205ENST00000478896 SLC4A9Q96Q91 983 aa18.06■□□□□ 0.48
VCL-205ENST00000478896 N4BP2Q86UW6 1770 aaPredicted RBP18.06■□□□□ 0.48
VCL-205ENST00000478896 SCN11AQ9UI33 1791 aa18.05■□□□□ 0.48
VCL-205ENST00000478896 ADRA2BP18089 450 aa18.05■□□□□ 0.48
VCL-205ENST00000478896 RFC4P35249 363 aa18.05■□□□□ 0.48
VCL-205ENST00000478896 ZNF526Q8TF50 670 aaPredicted RBP18.05■□□□□ 0.48
VCL-205ENST00000478896 ADCY9O60503 1353 aa18.04■□□□□ 0.48
VCL-205ENST00000478896 PTCD1O75127 700 aaKnown RBP18.04■□□□□ 0.48
VCL-205ENST00000478896 RC3H1Q5TC82 1133 aaKnown RBP18.04■□□□□ 0.48
VCL-205ENST00000478896 NLGN1Q8N2Q7 840 aa18.04■□□□□ 0.48
VCL-205ENST00000478896 ARHGEF1Q92888 912 aaKnown RBP18.04■□□□□ 0.48
VCL-205ENST00000478896 MYH14Q7Z406 1995 aaKnown RBP18.04■□□□□ 0.48
VCL-205ENST00000478896 PXDNLA1KZ92 1463 aa18.03■□□□□ 0.48
VCL-205ENST00000478896 RPS6KA4O75676 772 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 IL13P35225 146 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 TJP1Q07157 1748 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 C10orf71Q711Q0 1435 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 NFATC2IPQ8NCF5 419 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 KIAA1551Q9HCM1 1747 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 CCDC87Q9NVE4 849 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 PARP3Q9Y6F1 533 aa18.02■□□□□ 0.48
VCL-205ENST00000478896 VIRMAQ69YN4 1812 aaKnown RBP18.02■□□□□ 0.47
VCL-205ENST00000478896 GYS1P13807 737 aa18■□□□□ 0.47
VCL-205ENST00000478896 CRKLP46109 303 aaKnown RBP18■□□□□ 0.47
VCL-205ENST00000478896 TGFB2P61812 414 aa18■□□□□ 0.47
VCL-205ENST00000478896 BCS1LQ9Y276 419 aa18■□□□□ 0.47
VCL-205ENST00000478896 KIF7Q2M1P5 1343 aa17.99■□□□□ 0.47
VCL-205ENST00000478896 AKAP4Q5JQC9 854 aa17.99■□□□□ 0.47
VCL-205ENST00000478896 AMER1Q5JTC6 1135 aaPredicted RBP17.99■□□□□ 0.47
VCL-205ENST00000478896 A0A0G2JLW4 131 aa17.98■□□□□ 0.47
VCL-205ENST00000478896 BRCA1P38398 1863 aaKnown RBP17.97■□□□□ 0.47
VCL-205ENST00000478896 HMOX1P09601 288 aa17.97■□□□□ 0.47
VCL-205ENST00000478896 SRP68Q9UHB9 627 aaKnown RBP17.96■□□□□ 0.47
VCL-205ENST00000478896 USP42Q9H9J4 1324 aaKnown RBP17.96■□□□□ 0.46
VCL-205ENST00000478896 MRC1P22897 1456 aa17.95■□□□□ 0.46
VCL-205ENST00000478896 FCHSD2O94868 740 aa17.95■□□□□ 0.46
VCL-205ENST00000478896 DPEP1P16444 411 aa17.95■□□□□ 0.46
VCL-205ENST00000478896 CC2D1BQ5T0F9 858 aaKnown RBP17.95■□□□□ 0.46
VCL-205ENST00000478896 SLC52A2Q9HAB3 445 aa17.95■□□□□ 0.46
VCL-205ENST00000478896 ARFGEF1Q9Y6D6 1849 aa17.93■□□□□ 0.46
VCL-205ENST00000478896 RNMTO43148 476 aaKnown RBP17.93■□□□□ 0.46
VCL-205ENST00000478896 DIAPH1O60610 1272 aaKnown RBP17.93■□□□□ 0.46
VCL-205ENST00000478896 FKBP8Q14318 412 aa17.93■□□□□ 0.46
VCL-205ENST00000478896 ARHGAP27Q6ZUM4 889 aa17.93■□□□□ 0.46
VCL-205ENST00000478896 DNAJC10Q8IXB1 793 aa17.93■□□□□ 0.46
VCL-205ENST00000478896 LGR6Q9HBX8 967 aa17.93■□□□□ 0.46
VCL-205ENST00000478896 ZPR1O75312 459 aa17.92■□□□□ 0.46
VCL-205ENST00000478896 SLC39A6Q13433 755 aa17.92■□□□□ 0.46
VCL-205ENST00000478896 CNGB1Q14028 1251 aaPredicted RBP17.92■□□□□ 0.46
VCL-205ENST00000478896 ADAMTS7Q9UKP4 1686 aa17.91■□□□□ 0.46
VCL-205ENST00000478896 INTS5Q6P9B9 1019 aaKnown RBP17.91■□□□□ 0.46
VCL-205ENST00000478896 KCPQ6ZWJ8 1503 aa17.9■□□□□ 0.46
VCL-205ENST00000478896 HSPA6P17066 643 aa17.9■□□□□ 0.46
VCL-205ENST00000478896 DDR1Q08345 913 aa17.9■□□□□ 0.46
VCL-205ENST00000478896 MTHFSDQ2M296 383 aaKnown RBP17.9■□□□□ 0.46
VCL-205ENST00000478896 USPL1Q5W0Q7 1092 aa17.9■□□□□ 0.46
VCL-205ENST00000478896 PIM2Q9P1W9 311 aa17.9■□□□□ 0.46
VCL-205ENST00000478896 KIF3CO14782 793 aa17.89■□□□□ 0.45
VCL-205ENST00000478896 SOS1Q07889 1333 aaPredicted RBP17.89■□□□□ 0.45
VCL-205ENST00000478896 COL15A1P39059 1388 aa17.89■□□□□ 0.45
VCL-205ENST00000478896 PER1O15534 1290 aaPredicted RBP17.88■□□□□ 0.45
VCL-205ENST00000478896 UBR2Q8IWV8 1755 aa17.88■□□□□ 0.45
VCL-205ENST00000478896 POLRMTO00411 1230 aaKnown RBP17.87■□□□□ 0.45
VCL-205ENST00000478896 U2SURPO15042 1029 aaKnown RBP17.87■□□□□ 0.45
VCL-205ENST00000478896 CYP19A1P11511 503 aaPredicted RBP17.87■□□□□ 0.45
VCL-205ENST00000478896 DALRD3Q5D0E6 543 aaKnown RBP17.87■□□□□ 0.45
VCL-205ENST00000478896 TTC5Q8N0Z6 440 aa17.87■□□□□ 0.45
VCL-205ENST00000478896 ZBTB1Q9Y2K1 713 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms