RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 ZBTB7BO15156 539 aaPredicted RBP9.13□□□□□ -0.95
VPS50-214ENST00000477935 TLR1Q15399 786 aa9.13□□□□□ -0.95
VPS50-214ENST00000477935 ZSCAN10Q96SZ4 725 aaPredicted RBP9.13□□□□□ -0.95
VPS50-214ENST00000477935 DNAAF2Q9NVR5 837 aaKnown RBP9.13□□□□□ -0.95
VPS50-214ENST00000477935 SERTAD1Q9UHV2 236 aa9.13□□□□□ -0.95
VPS50-214ENST00000477935 TERTO14746 1132 aaKnown RBP9.12□□□□□ -0.95
VPS50-214ENST00000477935 RHOQP17081 205 aa9.12□□□□□ -0.95
VPS50-214ENST00000477935 KANK4Q5T7N3 995 aaPredicted RBP9.12□□□□□ -0.95
VPS50-214ENST00000477935 CCDC102BQ68D86 513 aa9.12□□□□□ -0.95
VPS50-214ENST00000477935 NPAS3Q8IXF0 933 aa9.12□□□□□ -0.95
VPS50-214ENST00000477935 LARGE2Q8N3Y3 721 aa9.12□□□□□ -0.95
VPS50-214ENST00000477935 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS50-214ENST00000477935 ZNF594Q96JF6 807 aaPredicted RBP9.12□□□□□ -0.95
VPS50-214ENST00000477935 SENP3-EIF4A1A0A087X0R7 540 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 SPATA31C2B4DYI2 1134 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 RASA1P20936 1047 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 RFX1P22670 979 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 VEGFBP49765 207 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 SMTNP53814 917 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 POU4F2Q12837 409 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 NFX1Q12986 1120 aaKnown RBP9.11□□□□□ -0.95
VPS50-214ENST00000477935 SIX5Q8N196 739 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 TPCN2Q8NHX9 752 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 CCDC97Q96F63 343 aaPredicted RBP9.11□□□□□ -0.95
VPS50-214ENST00000477935 SLC4A9Q96Q91 983 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 C1orf115Q9H7X2 142 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 VRTNQ9H8Y1 702 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 ZNF358Q9NW07 568 aa9.11□□□□□ -0.95
VPS50-214ENST00000477935 EIF4G1Q04637 1599 aaKnown RBP9.11□□□□□ -0.95
VPS50-214ENST00000477935 SLC35F4A4IF30 521 aa9.1□□□□□ -0.95
VPS50-214ENST00000477935 PPFIA3O75145 1194 aa9.1□□□□□ -0.95
VPS50-214ENST00000477935 GTF2E1P29083 439 aaPredicted RBP9.1□□□□□ -0.95
VPS50-214ENST00000477935 TMEM214Q6NUQ4 689 aaKnown RBP9.1□□□□□ -0.95
VPS50-214ENST00000477935 NBPF10Q6P3W6 841 aaKnown RBP9.1□□□□□ -0.95
VPS50-214ENST00000477935 TAS1R3Q7RTX0 852 aa9.1□□□□□ -0.95
VPS50-214ENST00000477935 NBPF15Q8N660 670 aa9.1□□□□□ -0.95
VPS50-214ENST00000477935 SERPINA10Q9UK55 444 aa9.1□□□□□ -0.95
VPS50-214ENST00000477935 A6NJY4 79 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 BACH1O14867 736 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 DKK1O94907 266 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 MTFR1Q15390 333 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 CRTC2Q53ET0 693 aaPredicted RBP9.09□□□□□ -0.95
VPS50-214ENST00000477935 PPARGC1BQ86YN6 1023 aaKnown RBP9.09□□□□□ -0.95
VPS50-214ENST00000477935 CCDC82Q8N4S0 544 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 CCDC155Q8N6L0 562 aa9.09□□□□□ -0.95
VPS50-214ENST00000477935 FAM196BA6NMK8 535 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L15C9J2P7 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L10C9JJH3 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L13C9JLJ4 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L12C9JPN9 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L11C9JVI0 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L21D6R901 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L18D6R9N7 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L22D6RA61 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L17D6RBQ6 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L19D6RCP7 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L20D6RJB6 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 H3BM21 787 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 USP17L24Q0WX57 530 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 PTK7Q13308 1070 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 WDR44Q5JSH3 913 aa9.08□□□□□ -0.96
VPS50-214ENST00000477935 LARP1Q6PKG0 1096 aaKnown RBP9.08□□□□□ -0.96
VPS50-214ENST00000477935 WFS1O76024 890 aa9.07□□□□□ -0.96
VPS50-214ENST00000477935 GNASQ5JWF2 1037 aa9.07□□□□□ -0.96
VPS50-214ENST00000477935 TREML4Q6UXN2 200 aa9.07□□□□□ -0.96
VPS50-214ENST00000477935 RHBDD1Q8TEB9 315 aa9.07□□□□□ -0.96
VPS50-214ENST00000477935 SLC16A10Q8TF71 515 aa9.07□□□□□ -0.96
VPS50-214ENST00000477935 SFI1A8K8P3 1242 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 ITGA6P23229 1130 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 PHKA2P46019 1235 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 EPHA4P54764 986 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 C4orf17Q53FE4 359 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 CDCA8Q53HL2 280 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 LCE2AQ5TA79 106 aaPredicted RBP9.06□□□□□ -0.96
VPS50-214ENST00000477935 IQSEC3Q9UPP2 1182 aaPredicted RBP9.06□□□□□ -0.96
VPS50-214ENST00000477935 DYRK1BQ9Y463 629 aa9.06□□□□□ -0.96
VPS50-214ENST00000477935 RBM19Q9Y4C8 960 aaKnown RBP9.06□□□□□ -0.96
VPS50-214ENST00000477935 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.05□□□□□ -0.96
VPS50-214ENST00000477935 CDK2AP1O14519 115 aa9.05□□□□□ -0.96
VPS50-214ENST00000477935 LCE2CQ5TA81 110 aa9.05□□□□□ -0.96
VPS50-214ENST00000477935 TIMMDC1Q9NPL8 285 aa9.05□□□□□ -0.96
VPS50-214ENST00000477935 M0R2N6 131 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 SEC13P55735 322 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 SRPK2P78362 688 aaKnown RBP9.04□□□□□ -0.96
VPS50-214ENST00000477935 DPYDQ12882 1025 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 TNS4Q8IZW8 715 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 ZNF295-AS1Q8N0V1 137 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 SCHIP1Q9P0W5 487 aaPredicted RBP9.04□□□□□ -0.96
VPS50-214ENST00000477935 USP3Q9Y6I4 520 aa9.04□□□□□ -0.96
VPS50-214ENST00000477935 ANKMY2Q8IV38 441 aa9.03□□□□□ -0.96
VPS50-214ENST00000477935 TSEN2Q8NCE0 465 aaKnown RBP9.03□□□□□ -0.96
VPS50-214ENST00000477935 IRF7Q92985 503 aa9.03□□□□□ -0.96
VPS50-214ENST00000477935 GAS2L1Q99501 681 aaPredicted RBP9.03□□□□□ -0.96
VPS50-214ENST00000477935 NIFKQ9BYG3 293 aaKnown RBP9.03□□□□□ -0.96
VPS50-214ENST00000477935 ERBB4Q15303 1308 aa9.03□□□□□ -0.96
VPS50-214ENST00000477935 SUPT5HO00267 1087 aaKnown RBP9.02□□□□□ -0.97
VPS50-214ENST00000477935 VSIG8P0DPA2 414 aa9.02□□□□□ -0.97
VPS50-214ENST00000477935 PLA2G4AP47712 749 aa9.02□□□□□ -0.97
VPS50-214ENST00000477935 FOXK2Q01167 660 aa9.02□□□□□ -0.97
VPS50-214ENST00000477935 ARXQ96QS3 562 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms