RNA–Protein interactions for RNA: ENST00000477888.1

SPTLC1-205, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 5

Gene SPTLC1, Length 359 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-205ENST00000477888 FAM161AQ3B820 660 aa10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 DALRD3Q5D0E6 543 aaKnown RBP10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 TRAPPC3LQ5T215 181 aa10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 HDGFL2Q7Z4V5 671 aaPredicted RBP10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 RTN4Q9NQC3 1192 aaKnown RBP10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 CCDC87Q9NVE4 849 aa10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 EDC4Q6P2E9 1401 aaKnown RBP10.5□□□□□ -0.73
SPTLC1-205ENST00000477888 GLTPD2A6NH11 291 aa10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 TATP17735 454 aaPredicted RBP10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 NKX1-1Q15270 411 aaPredicted RBP10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 TMC1Q8TDI8 760 aa10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 FAM208AQ9UK61 1670 aaKnown RBP10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 KIAA1551Q9HCM1 1747 aa10.49□□□□□ -0.73
SPTLC1-205ENST00000477888 LTN1O94822 1766 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 POTECB2RU33 542 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 GYS1P13807 737 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 ATP6V1AP38606 617 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 CNKSR2Q8WXI2 1034 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 ARHGEF1Q92888 912 aaKnown RBP10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 ASAP1Q9ULH1 1129 aa10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 ZC3H4Q9UPT8 1303 aaKnown RBP10.48□□□□□ -0.73
SPTLC1-205ENST00000477888 COG3Q96JB2 828 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 CREBZFQ9NS37 354 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 TERF2IPQ9NYB0 399 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 MKRN1Q9UHC7 482 aaKnown RBP10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 RTCBQ9Y3I0 505 aaKnown RBP10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 PARP3Q9Y6F1 533 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 A0A1W2PP64 1363 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 UBR3Q6ZT12 1888 aa10.47□□□□□ -0.73
SPTLC1-205ENST00000477888 CTCFP49711 727 aaPredicted RBP10.46□□□□□ -0.73
SPTLC1-205ENST00000477888 L3MBTL2Q969R5 705 aa10.46□□□□□ -0.73
SPTLC1-205ENST00000477888 ABHD8Q96I13 439 aa10.46□□□□□ -0.73
SPTLC1-205ENST00000477888 MON2Q7Z3U7 1717 aa10.46□□□□□ -0.74
SPTLC1-205ENST00000477888 TAF1LQ8IZX4 1826 aa10.46□□□□□ -0.74
SPTLC1-205ENST00000477888 KIF13BQ9NQT8 1826 aa10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 KDM6AO15550 1401 aaPredicted RBP10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 CHRNA5P30532 468 aa10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 RGS19P49795 217 aa10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 RRS1Q15050 365 aaKnown RBP10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 ATG3Q9NT62 314 aa10.45□□□□□ -0.74
SPTLC1-205ENST00000477888 N4BP2Q86UW6 1770 aaPredicted RBP10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 RTL1A6NKG5 1358 aa10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 LMNB1P20700 586 aa10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 MLLT1Q03111 559 aaPredicted RBP10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 HSP90AB2PQ58FF8 381 aa10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 RC3H1Q5TC82 1133 aaKnown RBP10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 SLC4A9Q96Q91 983 aa10.44□□□□□ -0.74
SPTLC1-205ENST00000477888 ROCK2O75116 1388 aaKnown RBP10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 RPS6KA4O75676 772 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 RFC4P35249 363 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 LBX1P52954 281 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 RASSF7Q02833 373 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 PUS7Q96PZ0 661 aaKnown RBP10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 WBP1LQ9NX94 342 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 TMOD3Q9NYL9 352 aa10.43□□□□□ -0.74
SPTLC1-205ENST00000477888 CNTNAP1P78357 1384 aa10.42□□□□□ -0.74
SPTLC1-205ENST00000477888 DDR1Q08345 913 aa10.42□□□□□ -0.74
SPTLC1-205ENST00000477888 FOXD4L1Q9NU39 408 aa10.42□□□□□ -0.74
SPTLC1-205ENST00000477888 MAP2P11137 1827 aaKnown RBP10.42□□□□□ -0.74
SPTLC1-205ENST00000477888 TNRC6CQ9HCJ0 1690 aaKnown RBP10.41□□□□□ -0.74
SPTLC1-205ENST00000477888 VEGFBP49765 207 aa10.41□□□□□ -0.74
SPTLC1-205ENST00000477888 FKBP8Q14318 412 aa10.41□□□□□ -0.74
SPTLC1-205ENST00000477888 CHADLQ6NUI6 762 aa10.41□□□□□ -0.74
SPTLC1-205ENST00000477888 AIDAQ96BJ3 306 aa10.41□□□□□ -0.74
SPTLC1-205ENST00000477888 INSRP06213 1382 aa10.4□□□□□ -0.74
SPTLC1-205ENST00000477888 KDRP35968 1356 aa10.4□□□□□ -0.74
SPTLC1-205ENST00000477888 CNTNAP4Q9C0A0 1308 aa10.4□□□□□ -0.74
SPTLC1-205ENST00000477888 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.4□□□□□ -0.74
SPTLC1-205ENST00000477888 SPG7Q9UQ90 795 aa10.4□□□□□ -0.74
SPTLC1-205ENST00000477888 SMG6Q86US8 1419 aaKnown RBP10.4□□□□□ -0.75
SPTLC1-205ENST00000477888 PASKQ96RG2 1323 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 C4AP0C0L4 1744 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 PKD1L3Q7Z443 1732 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 BRCA1P38398 1863 aaKnown RBP10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 POLRMTO00411 1230 aaKnown RBP10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 FYB1O15117 783 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 POTEIP0CG38 1075 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 POTEJP0CG39 1038 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 HSPA8P11142 646 aaKnown RBP10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 TM4SF1P30408 202 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 DPY19L2Q6NUT2 758 aa10.39□□□□□ -0.75
SPTLC1-205ENST00000477888 NFKBIEO00221 500 aa10.38□□□□□ -0.75
SPTLC1-205ENST00000477888 PHKG2P15735 406 aa10.38□□□□□ -0.75
SPTLC1-205ENST00000477888 SRP68Q9UHB9 627 aaKnown RBP10.38□□□□□ -0.75
SPTLC1-205ENST00000477888 RGPD2P0DJD1 1756 aa10.38□□□□□ -0.75
SPTLC1-205ENST00000477888 ARFGEF1Q9Y6D6 1849 aa10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 USP42Q9H9J4 1324 aaKnown RBP10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 CCDC85CA6NKD9 419 aa10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 IFNL2Q8IZJ0 200 aa10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 RBM42Q9BTD8 480 aaKnown RBP10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 GGNBP2Q9H3C7 697 aa10.37□□□□□ -0.75
SPTLC1-205ENST00000477888 NCAPD2Q15021 1401 aa10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 ITGBL1O95965 494 aaPredicted RBP10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 TTLL6Q8N841 843 aa10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 FLT4P35916 1363 aa10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 KIF24Q5T7B8 1368 aa10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 TONSLQ96HA7 1378 aa10.36□□□□□ -0.75
SPTLC1-205ENST00000477888 TMEM88BA6NKF7 163 aa10.35□□□□□ -0.75
SPTLC1-205ENST00000477888 SBF1O95248 1867 aa10.34□□□□□ -0.75
SPTLC1-205ENST00000477888 ERVV-2B6SEH9 535 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms