RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 COL23A1Q86Y22 540 aaPredicted RBP29.3■■■□□ 2.28
COL9A3-211ENST00000477612 FLAD1Q8NFF5 587 aa29.3■■■□□ 2.28
COL9A3-211ENST00000477612 CFAP53Q96M91 514 aa29.28■■■□□ 2.28
COL9A3-211ENST00000477612 ATP6V1AP38606 617 aa29.27■■■□□ 2.28
COL9A3-211ENST00000477612 MTHFSDQ2M296 383 aaKnown RBP29.27■■■□□ 2.28
COL9A3-211ENST00000477612 COL5A3P25940 1745 aaPredicted RBP29.26■■■□□ 2.27
COL9A3-211ENST00000477612 ITPK1Q13572 414 aa29.26■■■□□ 2.27
COL9A3-211ENST00000477612 NFATC2IPQ8NCF5 419 aa29.26■■■□□ 2.27
COL9A3-211ENST00000477612 LINC00116Q8NCU8 138 aa29.26■■■□□ 2.27
COL9A3-211ENST00000477612 ARXQ96QS3 562 aa29.26■■■□□ 2.27
COL9A3-211ENST00000477612 U2SURPO15042 1029 aaKnown RBP29.25■■■□□ 2.27
COL9A3-211ENST00000477612 SLC4A9Q96Q91 983 aa29.25■■■□□ 2.27
COL9A3-211ENST00000477612 MRC1P22897 1456 aa29.24■■■□□ 2.27
COL9A3-211ENST00000477612 AK7Q96M32 723 aa29.24■■■□□ 2.27
COL9A3-211ENST00000477612 MAP3K5Q99683 1374 aa29.24■■■□□ 2.27
COL9A3-211ENST00000477612 SYT17Q9BSW7 474 aa29.23■■■□□ 2.27
COL9A3-211ENST00000477612 LGR6Q9HBX8 967 aa29.23■■■□□ 2.27
COL9A3-211ENST00000477612 CICQ96RK0 1608 aaPredicted RBP29.23■■■□□ 2.27
COL9A3-211ENST00000477612 RNMTO43148 476 aaKnown RBP29.22■■■□□ 2.27
COL9A3-211ENST00000477612 FHDC1Q9C0D6 1143 aaPredicted RBP29.22■■■□□ 2.27
COL9A3-211ENST00000477612 POLD1P28340 1107 aa29.21■■■□□ 2.27
COL9A3-211ENST00000477612 AMIGO3Q86WK7 504 aa29.21■■■□□ 2.27
COL9A3-211ENST00000477612 SLC52A2Q9HAB3 445 aa29.21■■■□□ 2.27
COL9A3-211ENST00000477612 SSFA2P28290 1259 aa29.2■■■□□ 2.26
COL9A3-211ENST00000477612 NUDCQ9Y266 331 aa29.2■■■□□ 2.26
COL9A3-211ENST00000477612 MYH14Q7Z406 1995 aaKnown RBP29.2■■■□□ 2.26
COL9A3-211ENST00000477612 RBM42Q9BTD8 480 aaKnown RBP29.19■■■□□ 2.26
COL9A3-211ENST00000477612 MSH5O43196 834 aa29.18■■■□□ 2.26
COL9A3-211ENST00000477612 RC3H1Q5TC82 1133 aaKnown RBP29.18■■■□□ 2.26
COL9A3-211ENST00000477612 RSPH6AQ9H0K4 717 aa29.18■■■□□ 2.26
COL9A3-211ENST00000477612 GAS2L2Q8NHY3 880 aa29.17■■■□□ 2.26
COL9A3-211ENST00000477612 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.16■■■□□ 2.26
COL9A3-211ENST00000477612 TJP1Q07157 1748 aa29.16■■■□□ 2.26
COL9A3-211ENST00000477612 CNTNAP4Q9C0A0 1308 aa29.15■■■□□ 2.26
COL9A3-211ENST00000477612 SIPA1L3O60292 1781 aaPredicted RBP29.14■■■□□ 2.26
COL9A3-211ENST00000477612 GNPATO15228 680 aa29.13■■■□□ 2.25
COL9A3-211ENST00000477612 FCHSD2O94868 740 aa29.13■■■□□ 2.25
COL9A3-211ENST00000477612 PRKAR2BP31323 418 aa29.13■■■□□ 2.25
COL9A3-211ENST00000477612 UBR2Q8IWV8 1755 aa29.12■■■□□ 2.25
COL9A3-211ENST00000477612 GNAT3A8MTJ3 354 aa29.12■■■□□ 2.25
COL9A3-211ENST00000477612 PTCD1O75127 700 aaKnown RBP29.12■■■□□ 2.25
COL9A3-211ENST00000477612 SMIM5Q71RC9 77 aa29.12■■■□□ 2.25
COL9A3-211ENST00000477612 PHACTR3Q96KR7 559 aa29.12■■■□□ 2.25
COL9A3-211ENST00000477612 PHF14O94880 888 aa29.11■■■□□ 2.25
COL9A3-211ENST00000477612 DCAF8L1A6NGE4 600 aa29.1■■■□□ 2.25
COL9A3-211ENST00000477612 U2AF1L5P0DN76 240 aaPredicted RBP29.1■■■□□ 2.25
COL9A3-211ENST00000477612 U2AF1Q01081 240 aaKnown RBP eCLIP29.1■■■□□ 2.25
COL9A3-211ENST00000477612 IL17REQ8NFR9 667 aa29.1■■■□□ 2.25
COL9A3-211ENST00000477612 RPS6KA4O75676 772 aa29.09■■■□□ 2.25
COL9A3-211ENST00000477612 MSL1Q68DK7 614 aa29.09■■■□□ 2.25
COL9A3-211ENST00000477612 RTCBQ9Y3I0 505 aaKnown RBP29.09■■■□□ 2.25
COL9A3-211ENST00000477612 ADRA2BP18089 450 aa29.08■■■□□ 2.25
COL9A3-211ENST00000477612 KCPQ6ZWJ8 1503 aa29.08■■■□□ 2.25
COL9A3-211ENST00000477612 DDX10Q13206 875 aaKnown RBP29.07■■■□□ 2.24
COL9A3-211ENST00000477612 RALBP1Q15311 655 aa29.07■■■□□ 2.24
COL9A3-211ENST00000477612 CEMIPQ8WUJ3 1361 aa29.07■■■□□ 2.24
COL9A3-211ENST00000477612 TRAPPC3LQ5T215 181 aa29.06■■■□□ 2.24
COL9A3-211ENST00000477612 C4AP0C0L4 1744 aa29.06■■■□□ 2.24
COL9A3-211ENST00000477612 SLC39A6Q13433 755 aa29.05■■■□□ 2.24
COL9A3-211ENST00000477612 CRKLP46109 303 aaKnown RBP29.04■■■□□ 2.24
COL9A3-211ENST00000477612 VSIG10Q8N0Z9 540 aa29.04■■■□□ 2.24
COL9A3-211ENST00000477612 ARHGEF1Q92888 912 aaKnown RBP29.03■■■□□ 2.24
COL9A3-211ENST00000477612 TEFQ10587 303 aa29.02■■■□□ 2.24
COL9A3-211ENST00000477612 ZEB1P37275 1124 aaPredicted RBP29.01■■■□□ 2.23
COL9A3-211ENST00000477612 DLG5Q8TDM6 1919 aa29■■■□□ 2.23
COL9A3-211ENST00000477612 INTS5Q6P9B9 1019 aaKnown RBP29■■■□□ 2.23
COL9A3-211ENST00000477612 DNAJC10Q8IXB1 793 aa29■■■□□ 2.23
COL9A3-211ENST00000477612 CD2APQ9Y5K6 639 aa29■■■□□ 2.23
COL9A3-211ENST00000477612 CHD4Q14839 1912 aa29■■■□□ 2.23
COL9A3-211ENST00000477612 UTRNP46939 3433 aa28.99■■■□□ 2.23
COL9A3-211ENST00000477612 HTATSF1O43719 755 aaKnown RBP28.98■■■□□ 2.23
COL9A3-211ENST00000477612 CYP19A1P11511 503 aaPredicted RBP28.98■■■□□ 2.23
COL9A3-211ENST00000477612 KLHL34Q8N239 644 aa28.98■■■□□ 2.23
COL9A3-211ENST00000477612 NLGN2Q8NFZ4 835 aa28.98■■■□□ 2.23
COL9A3-211ENST00000477612 ZNF790Q6PG37 636 aa28.97■■■□□ 2.23
COL9A3-211ENST00000477612 NLGN1Q8N2Q7 840 aa28.97■■■□□ 2.23
COL9A3-211ENST00000477612 RFC4P35249 363 aa28.96■■■□□ 2.23
COL9A3-211ENST00000477612 TTC5Q8N0Z6 440 aa28.96■■■□□ 2.23
COL9A3-211ENST00000477612 PLEKHF1Q96S99 279 aa28.96■■■□□ 2.23
COL9A3-211ENST00000477612 KIF13BQ9NQT8 1826 aa28.95■■■□□ 2.23
COL9A3-211ENST00000477612 GYS1P13807 737 aa28.95■■■□□ 2.22
COL9A3-211ENST00000477612 CCDC87Q9NVE4 849 aa28.95■■■□□ 2.22
COL9A3-211ENST00000477612 RTF1Q92541 710 aaKnown RBP28.93■■■□□ 2.22
COL9A3-211ENST00000477612 MYBBP1AQ9BQG0 1328 aaKnown RBP28.93■■■□□ 2.22
COL9A3-211ENST00000477612 HEG1Q9ULI3 1381 aa28.92■■■□□ 2.22
COL9A3-211ENST00000477612 ZNF496Q96IT1 587 aaPredicted RBP28.92■■■□□ 2.22
COL9A3-211ENST00000477612 PNNQ9H307 717 aaKnown RBP28.92■■■□□ 2.22
COL9A3-211ENST00000477612 SOS1Q07889 1333 aaPredicted RBP28.92■■■□□ 2.22
COL9A3-211ENST00000477612 USP42Q9H9J4 1324 aaKnown RBP28.91■■■□□ 2.22
COL9A3-211ENST00000477612 BTBD11A6QL63 1104 aa28.9■■■□□ 2.22
COL9A3-211ENST00000477612 NEFMP07197 916 aa28.9■■■□□ 2.22
COL9A3-211ENST00000477612 MMP10P09238 476 aa28.9■■■□□ 2.22
COL9A3-211ENST00000477612 TEX13AQ9BXU3 409 aaPredicted RBP28.9■■■□□ 2.22
COL9A3-211ENST00000477612 GOLGB1Q14789 3259 aaKnown RBP28.9■■■□□ 2.22
COL9A3-211ENST00000477612 YY1P25490 414 aa28.89■■■□□ 2.22
COL9A3-211ENST00000477612 MCM10Q7L590 875 aa28.89■■■□□ 2.22
COL9A3-211ENST00000477612 GPR162Q16538 588 aa28.88■■■□□ 2.21
COL9A3-211ENST00000477612 FMNL2Q96PY5 1086 aa28.88■■■□□ 2.21
COL9A3-211ENST00000477612 ZBTB1Q9Y2K1 713 aa28.88■■■□□ 2.21
COL9A3-211ENST00000477612 STARD3NLO95772 234 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms