RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 GNAI3P08754 354 aa22.21■■□□□ 1.15
CCM2-209ENST00000477605 ARXQ96QS3 562 aa22.21■■□□□ 1.15
CCM2-209ENST00000477605 SMARCA5O60264 1052 aaPredicted RBP22.21■■□□□ 1.15
CCM2-209ENST00000477605 PDE1AP54750 535 aa22.2■■□□□ 1.14
CCM2-209ENST00000477605 CCDC30Q5VVM6 783 aa22.2■■□□□ 1.14
CCM2-209ENST00000477605 AMPHP49418 695 aa22.19■■□□□ 1.14
CCM2-209ENST00000477605 G2E3Q7L622 706 aa22.19■■□□□ 1.14
CCM2-209ENST00000477605 EYA1Q99502 592 aa22.19■■□□□ 1.14
CCM2-209ENST00000477605 AMOTL2Q9Y2J4 779 aa22.19■■□□□ 1.14
CCM2-209ENST00000477605 FOXO3O43524 673 aa22.18■■□□□ 1.14
CCM2-209ENST00000477605 KCNA6P17658 529 aa22.18■■□□□ 1.14
CCM2-209ENST00000477605 GAS2L3Q86XJ1 694 aa22.18■■□□□ 1.14
CCM2-209ENST00000477605 FMN2Q9NZ56 1722 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 NUTM2FA1L443 756 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 MCM2P49736 904 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 SLC4A10Q6U841 1118 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 NGDNQ8NEJ9 315 aaKnown RBP22.17■■□□□ 1.14
CCM2-209ENST00000477605 MIS18AQ9NYP9 233 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 SALL3Q9BXA9 1300 aa22.17■■□□□ 1.14
CCM2-209ENST00000477605 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.16■■□□□ 1.14
CCM2-209ENST00000477605 ATP8B2P98198 1209 aa22.16■■□□□ 1.14
CCM2-209ENST00000477605 DDX49Q9Y6V7 483 aaKnown RBP22.16■■□□□ 1.14
CCM2-209ENST00000477605 ANKARQ7Z5J8 1434 aa22.16■■□□□ 1.14
CCM2-209ENST00000477605 GNAT3A8MTJ3 354 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 LRRCC1Q9C099 1032 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 SRCIN1Q9C0H9 1055 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 LRRC37A3O60309 1634 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 F6X3S4 739 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 APBB1O00213 710 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 EPB41L2O43491 1005 aaKnown RBP22.15■■□□□ 1.14
CCM2-209ENST00000477605 TOM1O60784 492 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 FLIIQ13045 1269 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 DIP2AQ14689 1571 aa22.15■■□□□ 1.14
CCM2-209ENST00000477605 ZNF445P59923 1031 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 STAP2Q9UGK3 403 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 PXDNLA1KZ92 1463 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 AOX1Q06278 1338 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 ANAPC15P60006 121 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 IL17RAQ96F46 866 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 NWD1Q149M9 1564 aa22.13■■□□□ 1.13
CCM2-209ENST00000477605 XIRP1Q702N8 1843 aaKnown RBP22.13■■□□□ 1.13
CCM2-209ENST00000477605 SOX12O15370 315 aa22.12■■□□□ 1.13
CCM2-209ENST00000477605 MCCP23508 829 aa22.12■■□□□ 1.13
CCM2-209ENST00000477605 TRIM44Q96DX7 344 aaPredicted RBP22.12■■□□□ 1.13
CCM2-209ENST00000477605 ESPNB1AK53 854 aa22.11■■□□□ 1.13
CCM2-209ENST00000477605 CCDC173Q0VFZ6 552 aa22.11■■□□□ 1.13
CCM2-209ENST00000477605 LMBRD1Q9NUN5 540 aa22.11■■□□□ 1.13
CCM2-209ENST00000477605 MX1P20591 662 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 FKBP5Q13451 457 aaPredicted RBP22.1■■□□□ 1.13
CCM2-209ENST00000477605 MCTP1Q6DN14 999 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 PPP1R9BQ96SB3 815 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 ESYT1Q9BSJ8 1104 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 CHMP4AQ9BY43 222 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 MAP3K5Q99683 1374 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 CHD2O14647 1828 aaKnown RBP22.1■■□□□ 1.13
CCM2-209ENST00000477605 PIP4K2BP78356 416 aa22.1■■□□□ 1.13
CCM2-209ENST00000477605 TAF7Q15545 349 aaPredicted RBP22.1■■□□□ 1.13
CCM2-209ENST00000477605 ANP32BQ92688 251 aaKnown RBP22.1■■□□□ 1.13
CCM2-209ENST00000477605 TMEM94Q12767 1356 aa22.09■■□□□ 1.13
CCM2-209ENST00000477605 HOXC9P31274 260 aa22.09■■□□□ 1.13
CCM2-209ENST00000477605 PIK3C2AO00443 1686 aa22.09■■□□□ 1.13
CCM2-209ENST00000477605 NLRP6P59044 892 aa22.08■■□□□ 1.13
CCM2-209ENST00000477605 PROSER2Q86WR7 435 aaPredicted RBP22.08■■□□□ 1.12
CCM2-209ENST00000477605 EXOC6BQ9Y2D4 811 aa22.08■■□□□ 1.12
CCM2-209ENST00000477605 USP54Q70EL1 1684 aa22.08■■□□□ 1.12
CCM2-209ENST00000477605 NASPP49321 788 aaPredicted RBP22.07■■□□□ 1.12
CCM2-209ENST00000477605 RBM33Q96EV2 1170 aaKnown RBP22.07■■□□□ 1.12
CCM2-209ENST00000477605 RAB11FIP3O75154 756 aa22.06■■□□□ 1.12
CCM2-209ENST00000477605 CHMLP26374 656 aa22.06■■□□□ 1.12
CCM2-209ENST00000477605 INTS4Q96HW7 963 aaKnown RBP22.06■■□□□ 1.12
CCM2-209ENST00000477605 FAM208AQ9UK61 1670 aaKnown RBP22.06■■□□□ 1.12
CCM2-209ENST00000477605 XRN1Q8IZH2 1706 aaKnown RBP22.05■■□□□ 1.12
CCM2-209ENST00000477605 CUL4AQ13619 759 aa22.05■■□□□ 1.12
CCM2-209ENST00000477605 IL17REQ8NFR9 667 aa22.05■■□□□ 1.12
CCM2-209ENST00000477605 NEK4P51957 841 aa22.05■■□□□ 1.12
CCM2-209ENST00000477605 ZGPATQ8N5A5 531 aaKnown RBP22.05■■□□□ 1.12
CCM2-209ENST00000477605 PNMA6EA0A0J9YXQ4 647 aa22.04■■□□□ 1.12
CCM2-209ENST00000477605 PRKCSHP14314 528 aaPredicted RBP22.04■■□□□ 1.12
CCM2-209ENST00000477605 ZDHHC9Q9Y397 364 aa22.04■■□□□ 1.12
CCM2-209ENST00000477605 SSH3Q8TE77 659 aa22.03■■□□□ 1.12
CCM2-209ENST00000477605 TMX3Q96JJ7 454 aa22.03■■□□□ 1.12
CCM2-209ENST00000477605 N4BP2Q86UW6 1770 aaPredicted RBP22.03■■□□□ 1.12
CCM2-209ENST00000477605 UBTFL1P0CB47 393 aaPredicted RBP22.03■■□□□ 1.12
CCM2-209ENST00000477605 USP44Q9H0E7 712 aa22.03■■□□□ 1.12
CCM2-209ENST00000477605 CACNA1FO60840 1977 aa22.02■■□□□ 1.12
CCM2-209ENST00000477605 HOXB7P09629 217 aa22.02■■□□□ 1.12
CCM2-209ENST00000477605 PKP1Q13835 747 aa22.02■■□□□ 1.12
CCM2-209ENST00000477605 ZSCAN23Q3MJ62 389 aa22.02■■□□□ 1.12
CCM2-209ENST00000477605 LRRFIP2Q9Y608 721 aaKnown RBP22.02■■□□□ 1.12
CCM2-209ENST00000477605 HS1BP3Q53T59 392 aa22■■□□□ 1.11
CCM2-209ENST00000477605 CAVIN1Q6NZI2 390 aaKnown RBP22■■□□□ 1.11
CCM2-209ENST00000477605 MBD3O95983 291 aa22■■□□□ 1.11
CCM2-209ENST00000477605 POLA2Q14181 598 aa22■■□□□ 1.11
CCM2-209ENST00000477605 TRIM6-TRIM34B2RNG4 842 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 PRPF40AO75400 957 aaKnown RBP21.99■■□□□ 1.11
CCM2-209ENST00000477605 HSPA1LP34931 641 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 HDGFL1Q5TGJ6 251 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 TUBGCP6Q96RT7 1819 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 CEMIPQ8WUJ3 1361 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 BRD1O95696 1058 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms