RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 CNGB1Q14028 1251 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-223ENST00000476519 RC3H1Q5TC82 1133 aaKnown RBP16.24■□□□□ 0.19
SYNE1-223ENST00000476519 KDM6AO15550 1401 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-223ENST00000476519 CFAP53Q96M91 514 aa16.23■□□□□ 0.19
SYNE1-223ENST00000476519 RBM42Q9BTD8 480 aaKnown RBP16.23■□□□□ 0.19
SYNE1-223ENST00000476519 TOGARAM1Q9Y4F4 1720 aa16.22■□□□□ 0.19
SYNE1-223ENST00000476519 GNPATO15228 680 aa16.22■□□□□ 0.19
SYNE1-223ENST00000476519 MTHFSDQ2M296 383 aaKnown RBP16.22■□□□□ 0.19
SYNE1-223ENST00000476519 AMIGO3Q86WK7 504 aa16.22■□□□□ 0.19
SYNE1-223ENST00000476519 SLC4A9Q96Q91 983 aa16.22■□□□□ 0.19
SYNE1-223ENST00000476519 U2SURPO15042 1029 aaKnown RBP16.21■□□□□ 0.19
SYNE1-223ENST00000476519 YY1P25490 414 aa16.21■□□□□ 0.19
SYNE1-223ENST00000476519 TRAPPC3LQ5T215 181 aa16.21■□□□□ 0.19
SYNE1-223ENST00000476519 SLC52A2Q9HAB3 445 aa16.21■□□□□ 0.19
SYNE1-223ENST00000476519 LGR6Q9HBX8 967 aa16.21■□□□□ 0.19
SYNE1-223ENST00000476519 RTCBQ9Y3I0 505 aaKnown RBP16.21■□□□□ 0.19
SYNE1-223ENST00000476519 QSER1Q2KHR3 1735 aa16.21■□□□□ 0.19
SYNE1-223ENST00000476519 ITGB4P16144 1822 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 RNMTO43148 476 aaKnown RBP16.2■□□□□ 0.18
SYNE1-223ENST00000476519 PHF14O94880 888 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 ADRA2BP18089 450 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 MSL1Q68DK7 614 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 NUDCQ9Y266 331 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 CD2APQ9Y5K6 639 aa16.2■□□□□ 0.18
SYNE1-223ENST00000476519 PTCD1O75127 700 aaKnown RBP16.19■□□□□ 0.18
SYNE1-223ENST00000476519 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
SYNE1-223ENST00000476519 KLHL34Q8N239 644 aa16.19■□□□□ 0.18
SYNE1-223ENST00000476519 CNTNAP4Q9C0A0 1308 aa16.19■□□□□ 0.18
SYNE1-223ENST00000476519 RPS6KA4O75676 772 aa16.18■□□□□ 0.18
SYNE1-223ENST00000476519 GAS2L2Q8NHY3 880 aa16.18■□□□□ 0.18
SYNE1-223ENST00000476519 GPR162Q16538 588 aa16.17■□□□□ 0.18
SYNE1-223ENST00000476519 SMIM5Q71RC9 77 aa16.17■□□□□ 0.18
SYNE1-223ENST00000476519 NLGN1Q8N2Q7 840 aa16.17■□□□□ 0.18
SYNE1-223ENST00000476519 C5P01031 1676 aa16.17■□□□□ 0.18
SYNE1-223ENST00000476519 C4BP0C0L5 1744 aa16.16■□□□□ 0.18
SYNE1-223ENST00000476519 COL3A1P02461 1466 aaPredicted RBP16.16■□□□□ 0.18
SYNE1-223ENST00000476519 GNAT3A8MTJ3 354 aa16.15■□□□□ 0.18
SYNE1-223ENST00000476519 NLGN2Q8NFZ4 835 aa16.15■□□□□ 0.18
SYNE1-223ENST00000476519 ARHGEF1Q92888 912 aaKnown RBP16.15■□□□□ 0.18
SYNE1-223ENST00000476519 GOLGB1Q14789 3259 aaKnown RBP16.15■□□□□ 0.18
SYNE1-223ENST00000476519 FCHSD2O94868 740 aa16.14■□□□□ 0.17
SYNE1-223ENST00000476519 RFC4P35249 363 aa16.14■□□□□ 0.17
SYNE1-223ENST00000476519 COL24A1Q17RW2 1714 aa16.14■□□□□ 0.17
SYNE1-223ENST00000476519 GRIN3BO60391 1043 aa16.13■□□□□ 0.17
SYNE1-223ENST00000476519 U2AF1L5P0DN76 240 aaPredicted RBP16.13■□□□□ 0.17
SYNE1-223ENST00000476519 CRKLP46109 303 aaKnown RBP16.13■□□□□ 0.17
SYNE1-223ENST00000476519 U2AF1Q01081 240 aaKnown RBP eCLIP16.13■□□□□ 0.17
SYNE1-223ENST00000476519 VSIG10Q8N0Z9 540 aa16.13■□□□□ 0.17
SYNE1-223ENST00000476519 IL17REQ8NFR9 667 aa16.13■□□□□ 0.17
SYNE1-223ENST00000476519 RSPH6AQ9H0K4 717 aa16.13■□□□□ 0.17
SYNE1-223ENST00000476519 TAF1LQ8IZX4 1826 aa16.12■□□□□ 0.17
SYNE1-223ENST00000476519 PRKAR2BP31323 418 aa16.12■□□□□ 0.17
SYNE1-223ENST00000476519 SLC39A6Q13433 755 aa16.12■□□□□ 0.17
SYNE1-223ENST00000476519 PHACTR3Q96KR7 559 aa16.12■□□□□ 0.17
SYNE1-223ENST00000476519 TUBGCP6Q96RT7 1819 aa16.11■□□□□ 0.17
SYNE1-223ENST00000476519 MMP10P09238 476 aa16.11■□□□□ 0.17
SYNE1-223ENST00000476519 TEFQ10587 303 aa16.11■□□□□ 0.17
SYNE1-223ENST00000476519 INTS5Q6P9B9 1019 aaKnown RBP16.11■□□□□ 0.17
SYNE1-223ENST00000476519 DNAJC10Q8IXB1 793 aa16.11■□□□□ 0.17
SYNE1-223ENST00000476519 CYP19A1P11511 503 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-223ENST00000476519 GYS1P13807 737 aa16.1■□□□□ 0.17
SYNE1-223ENST00000476519 PELP1Q8IZL8 1130 aaKnown RBP16.1■□□□□ 0.17
SYNE1-223ENST00000476519 TTC5Q8N0Z6 440 aa16.1■□□□□ 0.17
SYNE1-223ENST00000476519 ZNF831Q5JPB2 1677 aa16.1■□□□□ 0.17
SYNE1-223ENST00000476519 TEX13AQ9BXU3 409 aaPredicted RBP16.09■□□□□ 0.17
SYNE1-223ENST00000476519 CCDC87Q9NVE4 849 aa16.09■□□□□ 0.17
SYNE1-223ENST00000476519 HTATSF1O43719 755 aaKnown RBP16.08■□□□□ 0.16
SYNE1-223ENST00000476519 STARD3NLO95772 234 aa16.08■□□□□ 0.16
SYNE1-223ENST00000476519 ZNF790Q6PG37 636 aa16.08■□□□□ 0.16
SYNE1-223ENST00000476519 MRC1P22897 1456 aa16.08■□□□□ 0.16
SYNE1-223ENST00000476519 UBR3Q6ZT12 1888 aa16.08■□□□□ 0.16
SYNE1-223ENST00000476519 RALBP1Q15311 655 aa16.07■□□□□ 0.16
SYNE1-223ENST00000476519 CEMIPQ8WUJ3 1361 aa16.06■□□□□ 0.16
SYNE1-223ENST00000476519 YBX3P16989 372 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNE1-223ENST00000476519 TGFB2P61812 414 aa16.06■□□□□ 0.16
SYNE1-223ENST00000476519 RTF1Q92541 710 aaKnown RBP16.06■□□□□ 0.16
SYNE1-223ENST00000476519 PARP3Q9Y6F1 533 aa16.06■□□□□ 0.16
SYNE1-223ENST00000476519 SOS1Q07889 1333 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-223ENST00000476519 USP42Q9H9J4 1324 aaKnown RBP16.05■□□□□ 0.16
SYNE1-223ENST00000476519 ZPR1O75312 459 aa16.05■□□□□ 0.16
SYNE1-223ENST00000476519 NEFMP07197 916 aa16.05■□□□□ 0.16
SYNE1-223ENST00000476519 ZNF496Q96IT1 587 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-223ENST00000476519 PNNQ9H307 717 aaKnown RBP16.05■□□□□ 0.16
SYNE1-223ENST00000476519 SCN11AQ9UI33 1791 aa16.05■□□□□ 0.16
SYNE1-223ENST00000476519 BTBD11A6QL63 1104 aa16.04■□□□□ 0.16
SYNE1-223ENST00000476519 FKBP8Q14318 412 aa16.04■□□□□ 0.16
SYNE1-223ENST00000476519 ZNF784Q8NCA9 323 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-223ENST00000476519 FMNL2Q96PY5 1086 aa16.04■□□□□ 0.16
SYNE1-223ENST00000476519 SRP68Q9UHB9 627 aaKnown RBP16.04■□□□□ 0.16
SYNE1-223ENST00000476519 DDX10Q13206 875 aaKnown RBP16.03■□□□□ 0.16
SYNE1-223ENST00000476519 NARFQ9UHQ1 456 aa16.03■□□□□ 0.16
SYNE1-223ENST00000476519 ADAMTS7Q9UKP4 1686 aa16.02■□□□□ 0.16
SYNE1-223ENST00000476519 A0A087WZG4 1122 aa16.02■□□□□ 0.16
SYNE1-223ENST00000476519 TM4SF1P30408 202 aa16.02■□□□□ 0.16
SYNE1-223ENST00000476519 ZBTB1Q9Y2K1 713 aa16.02■□□□□ 0.16
SYNE1-223ENST00000476519 HEG1Q9ULI3 1381 aa16.01■□□□□ 0.15
SYNE1-223ENST00000476519 KCPQ6ZWJ8 1503 aa16.01■□□□□ 0.15
SYNE1-223ENST00000476519 EIF5P55010 431 aaKnown RBP16.01■□□□□ 0.15
SYNE1-223ENST00000476519 USPL1Q5W0Q7 1092 aa16.01■□□□□ 0.15
SYNE1-223ENST00000476519 CANXP27824 592 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms