RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	TRAK1	Q9UPV9	953 aa		10.72	□□□□□ -0.69
HDAC9-223	ENST00000476135	ACE	P12821	1306 aa		10.72	□□□□□ -0.69
HDAC9-223	ENST00000476135	WDR17	Q8IZU2	1322 aa		10.72	□□□□□ -0.69
HDAC9-223	ENST00000476135	COL18A1	P39060	1754 aa		10.72	□□□□□ -0.69
HDAC9-223	ENST00000476135	BTAF1	O14981	1849 aa		10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	BRD4	O60885	1362 aa	Predicted RBP	10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	PNPLA7	Q6ZV29	1317 aa		10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	WDR90	Q96KV7	1748 aa		10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	LRRC4B	Q9NT99	713 aa		10.71	□□□□□ -0.69
HDAC9-223	ENST00000476135	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	PLEKHG3	A1L390	1219 aa		10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	RIMBP2	O15034	1052 aa		10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	KLRG1	Q96E93	195 aa		10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	CARD10	Q9BWT7	1032 aa		10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	TUBGCP6	Q96RT7	1819 aa		10.7	□□□□□ -0.7
HDAC9-223	ENST00000476135	USP6	P35125	1406 aa		10.69	□□□□□ -0.7
HDAC9-223	ENST00000476135	TOMM70	O94826	608 aa		10.69	□□□□□ -0.7
HDAC9-223	ENST00000476135	SLC27A3	Q5K4L6	730 aa		10.69	□□□□□ -0.7
HDAC9-223	ENST00000476135	SPNS2	Q8IVW8	549 aa		10.69	□□□□□ -0.7
HDAC9-223	ENST00000476135	TNS2	Q63HR2	1409 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	ZBTB7C	A1YPR0	619 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	ACSBG1	Q96GR2	724 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	KRTAP3-3	Q9BYR6	98 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	KRTAP3-2	Q9BYR7	98 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	SLIT3	O75094	1523 aa		10.68	□□□□□ -0.7
HDAC9-223	ENST00000476135	ZSWIM6	Q9HCJ5	1215 aa		10.67	□□□□□ -0.7
HDAC9-223	ENST00000476135	TFCP2L1	Q9NZI6	479 aa		10.67	□□□□□ -0.7
HDAC9-223	ENST00000476135	CD2AP	Q9Y5K6	639 aa		10.67	□□□□□ -0.7
HDAC9-223	ENST00000476135	CCDC7	Q96M83	1385 aa		10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	TRPM1	Q7Z4N2	1603 aa		10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	CDK19	Q9BWU1	502 aa		10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	RTN4	Q9NQC3	1192 aa	Known RBP	10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	AXIN2	Q9Y2T1	843 aa		10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	ABCC6	O95255	1503 aa		10.66	□□□□□ -0.7
HDAC9-223	ENST00000476135	RGPD5	Q99666	1765 aa		10.65	□□□□□ -0.7
HDAC9-223	ENST00000476135	ERBB3	P21860	1342 aa		10.65	□□□□□ -0.7
HDAC9-223	ENST00000476135	MMRN1	Q13201	1228 aa		10.65	□□□□□ -0.7
HDAC9-223	ENST00000476135	GPR153	Q6NV75	609 aa		10.65	□□□□□ -0.7
HDAC9-223	ENST00000476135	WWC3	Q9ULE0	1092 aa		10.64	□□□□□ -0.71
HDAC9-223	ENST00000476135	KAT6B	Q8WYB5	2073 aa		10.64	□□□□□ -0.71
HDAC9-223	ENST00000476135	CSB-PGBD3	P0DP91	1061 aa		10.63	□□□□□ -0.71
HDAC9-223	ENST00000476135	MPHOSPH9	Q99550	1183 aa		10.63	□□□□□ -0.71
HDAC9-223	ENST00000476135	CPSF1	Q10570	1443 aa	Known RBP	10.63	□□□□□ -0.71
HDAC9-223	ENST00000476135	PPIP5K1	Q6PFW1	1433 aa		10.63	□□□□□ -0.71
HDAC9-223	ENST00000476135	C2orf72	A6NCS6	295 aa		10.62	□□□□□ -0.71
HDAC9-223	ENST00000476135	PPP1R37	O75864	691 aa		10.62	□□□□□ -0.71
HDAC9-223	ENST00000476135	ARHGEF25	Q86VW2	580 aa		10.62	□□□□□ -0.71
HDAC9-223	ENST00000476135	RBM46	Q8TBY0	533 aa	Known RBP	10.62	□□□□□ -0.71
HDAC9-223	ENST00000476135	VARS2	Q5ST30	1063 aa	Known RBP	10.61	□□□□□ -0.71
HDAC9-223	ENST00000476135	COL23A1	Q86Y22	540 aa	Predicted RBP	10.61	□□□□□ -0.71
HDAC9-223	ENST00000476135	HS6ST3	Q8IZP7	471 aa		10.61	□□□□□ -0.71
HDAC9-223	ENST00000476135	CIC	Q96RK0	1608 aa	Predicted RBP	10.61	□□□□□ -0.71
HDAC9-223	ENST00000476135	LY75	O60449	1722 aa		10.61	□□□□□ -0.71
HDAC9-223	ENST00000476135	PIK3C2A	O00443	1686 aa		10.6	□□□□□ -0.71
HDAC9-223	ENST00000476135	HTRA3	P83110	453 aa		10.6	□□□□□ -0.71
HDAC9-223	ENST00000476135	FSTL1	Q12841	308 aa		10.6	□□□□□ -0.71
HDAC9-223	ENST00000476135	ARSI	Q5FYB1	569 aa		10.6	□□□□□ -0.71
HDAC9-223	ENST00000476135	MSL1	Q68DK7	614 aa		10.59	□□□□□ -0.71
HDAC9-223	ENST00000476135	KCNH5	Q8NCM2	988 aa		10.59	□□□□□ -0.71
HDAC9-223	ENST00000476135	IGSF1	Q8N6C5	1336 aa		10.58	□□□□□ -0.71
HDAC9-223	ENST00000476135	IL2RB	P14784	551 aa		10.58	□□□□□ -0.72
HDAC9-223	ENST00000476135	HSPA1A	P0DMV8	641 aa	Known RBP	10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	HSPA1B	P0DMV9	641 aa	Known RBP	10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	KCNQ4	P56696	695 aa		10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	NMRK2	Q9NPI5	230 aa		10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	PCNT	O95613	3336 aa		10.57	□□□□□ -0.72
HDAC9-223	ENST00000476135	FLAD1	Q8NFF5	587 aa		10.56	□□□□□ -0.72
HDAC9-223	ENST00000476135	STAC3	Q96MF2	364 aa		10.56	□□□□□ -0.72
HDAC9-223	ENST00000476135	QRICH2	Q9H0J4	1663 aa		10.55	□□□□□ -0.72
HDAC9-223	ENST00000476135	NFAT5	O94916	1531 aa		10.54	□□□□□ -0.72
HDAC9-223	ENST00000476135	HMGB2	P26583	209 aa	Known RBP	10.54	□□□□□ -0.72
HDAC9-223	ENST00000476135	TMC2	Q8TDI7	906 aa		10.54	□□□□□ -0.72
HDAC9-223	ENST00000476135	CCNL1	Q9UK58	526 aa	Predicted RBP	10.54	□□□□□ -0.72
HDAC9-223	ENST00000476135	KDM2A	Q9Y2K7	1162 aa		10.54	□□□□□ -0.72
HDAC9-223	ENST00000476135	ANKRD36B	Q8N2N9	1353 aa		10.53	□□□□□ -0.72
HDAC9-223	ENST00000476135	SRPK2	P78362	688 aa	Known RBP	10.53	□□□□□ -0.72
HDAC9-223	ENST00000476135	NLRP2	Q9NX02	1062 aa		10.53	□□□□□ -0.72
HDAC9-223	ENST00000476135	USP54	Q70EL1	1684 aa		10.53	□□□□□ -0.72
HDAC9-223	ENST00000476135	C10orf71	Q711Q0	1435 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	PRIM1	P49642	420 aa	Known RBP	10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	ZNF687	Q8N1G0	1237 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	DCAF11	Q8TEB1	546 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	CABP1	Q9NZU7	370 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	DOT1L	Q8TEK3	1739 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	NSD2	O96028	1365 aa		10.52	□□□□□ -0.73
HDAC9-223	ENST00000476135	C5	P01031	1676 aa		10.51	□□□□□ -0.73
HDAC9-223	ENST00000476135	DDX54	Q8TDD1	881 aa	Known RBP	10.51	□□□□□ -0.73
HDAC9-223	ENST00000476135	SYTL4	Q96C24	671 aa	Predicted RBP	10.51	□□□□□ -0.73
HDAC9-223	ENST00000476135	PLEKHG2	Q9H7P9	1386 aa		10.51	□□□□□ -0.73
HDAC9-223	ENST00000476135	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.5	□□□□□ -0.73
HDAC9-223	ENST00000476135	SMC1B	Q8NDV3	1235 aa		10.5	□□□□□ -0.73
HDAC9-223	ENST00000476135	TTC21B	Q7Z4L5	1316 aa		10.5	□□□□□ -0.73
HDAC9-223	ENST00000476135	TAF1L	Q8IZX4	1826 aa		10.49	□□□□□ -0.73
HDAC9-223	ENST00000476135	TTC21A	Q8NDW8	1320 aa		10.49	□□□□□ -0.73
HDAC9-223	ENST00000476135	KDM2B	Q8NHM5	1336 aa		10.49	□□□□□ -0.73
HDAC9-223	ENST00000476135	USP47	Q96K76	1375 aa		10.49	□□□□□ -0.73

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