RNA–Protein interactions for RNA: ENST00000475693.1

ATG4B-217, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 2,237 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-217ENST00000475693 SHANK3Q9BYB0 1731 aa23.33■■□□□ 1.33
ATG4B-217ENST00000475693 FRAT1Q92837 279 aaPredicted RBP23.33■■□□□ 1.33
ATG4B-217ENST00000475693 NECTIN2Q92692 538 aa23.32■■□□□ 1.32
ATG4B-217ENST00000475693 SLC52A2Q9HAB3 445 aa23.32■■□□□ 1.32
ATG4B-217ENST00000475693 A0A0G2JS52 829 aa23.32■■□□□ 1.32
ATG4B-217ENST00000475693 ANP32EQ9BTT0 268 aa23.31■■□□□ 1.32
ATG4B-217ENST00000475693 DDB1Q16531 1140 aa23.31■■□□□ 1.32
ATG4B-217ENST00000475693 THRAP3Q9Y2W1 955 aaKnown RBP23.3■■□□□ 1.32
ATG4B-217ENST00000475693 PRAMEF22A3QJZ6 481 aa23.29■■□□□ 1.32
ATG4B-217ENST00000475693 CABP4P57796 275 aa23.29■■□□□ 1.32
ATG4B-217ENST00000475693 SMC4Q9NTJ3 1288 aa23.29■■□□□ 1.32
ATG4B-217ENST00000475693 KAT6BQ8WYB5 2073 aa23.29■■□□□ 1.32
ATG4B-217ENST00000475693 FAM182BQ5T319 152 aa23.28■■□□□ 1.32
ATG4B-217ENST00000475693 MARCH10Q8NA82 808 aaPredicted RBP23.28■■□□□ 1.32
ATG4B-217ENST00000475693 SCN11AQ9UI33 1791 aa23.28■■□□□ 1.32
ATG4B-217ENST00000475693 NKX1-1Q15270 411 aaPredicted RBP23.28■■□□□ 1.32
ATG4B-217ENST00000475693 BARGINQ6ZT62 677 aa23.28■■□□□ 1.32
ATG4B-217ENST00000475693 FBXO41Q8TF61 875 aa23.28■■□□□ 1.32
ATG4B-217ENST00000475693 EIF4A1P60842 406 aaKnown RBP23.27■■□□□ 1.32
ATG4B-217ENST00000475693 QTRT2Q9H974 415 aaKnown RBP23.27■■□□□ 1.32
ATG4B-217ENST00000475693 EP400Q96L91 3159 aa23.27■■□□□ 1.32
ATG4B-217ENST00000475693 HSP90AB1P08238 724 aaKnown RBP23.27■■□□□ 1.31
ATG4B-217ENST00000475693 GJD4Q96KN9 370 aaPredicted RBP23.27■■□□□ 1.31
ATG4B-217ENST00000475693 ADAMTS7Q9UKP4 1686 aa23.25■■□□□ 1.31
ATG4B-217ENST00000475693 CLUAP1Q96AJ1 413 aa23.25■■□□□ 1.31
ATG4B-217ENST00000475693 SYTL4Q96C24 671 aaPredicted RBP23.24■■□□□ 1.31
ATG4B-217ENST00000475693 ACSBG1Q96GR2 724 aa23.24■■□□□ 1.31
ATG4B-217ENST00000475693 NOB1Q9ULX3 412 aaKnown RBP23.24■■□□□ 1.31
ATG4B-217ENST00000475693 WNK3Q9BYP7 1800 aa23.24■■□□□ 1.31
ATG4B-217ENST00000475693 ZNF790Q6PG37 636 aa23.24■■□□□ 1.31
ATG4B-217ENST00000475693 PLEKHG2Q9H7P9 1386 aa23.23■■□□□ 1.31
ATG4B-217ENST00000475693 CT47B1P0C2W7 299 aaPredicted RBP23.23■■□□□ 1.31
ATG4B-217ENST00000475693 EIF2S2P20042 333 aaKnown RBP23.23■■□□□ 1.31
ATG4B-217ENST00000475693 CANXP27824 592 aaKnown RBP23.23■■□□□ 1.31
ATG4B-217ENST00000475693 TNS2Q63HR2 1409 aa23.23■■□□□ 1.31
ATG4B-217ENST00000475693 PANK1Q8TE04 598 aa23.23■■□□□ 1.31
ATG4B-217ENST00000475693 CDCA7Q9BWT1 371 aaPredicted RBP23.23■■□□□ 1.31
ATG4B-217ENST00000475693 EXOC6Q8TAG9 804 aa23.22■■□□□ 1.31
ATG4B-217ENST00000475693 TRPC5Q9UL62 973 aaPredicted RBP23.22■■□□□ 1.31
ATG4B-217ENST00000475693 SIPA1L3O60292 1781 aaPredicted RBP23.22■■□□□ 1.31
ATG4B-217ENST00000475693 MRPL50Q8N5N7 158 aaKnown RBP23.21■■□□□ 1.31
ATG4B-217ENST00000475693 ZNF496Q96IT1 587 aaPredicted RBP23.21■■□□□ 1.31
ATG4B-217ENST00000475693 BABAM1Q9NWV8 329 aa23.21■■□□□ 1.31
ATG4B-217ENST00000475693 GLI3P10071 1580 aa23.21■■□□□ 1.31
ATG4B-217ENST00000475693 TOGARAM1Q9Y4F4 1720 aa23.21■■□□□ 1.31
ATG4B-217ENST00000475693 ERVV-2B6SEH9 535 aa23.21■■□□□ 1.31
ATG4B-217ENST00000475693 PIGBQ92521 554 aa23.21■■□□□ 1.31
ATG4B-217ENST00000475693 RLBP1P12271 317 aa23.2■■□□□ 1.3
ATG4B-217ENST00000475693 PRIM1P49642 420 aaKnown RBP23.2■■□□□ 1.3
ATG4B-217ENST00000475693 CRBNQ96SW2 442 aa23.2■■□□□ 1.3
ATG4B-217ENST00000475693 KDM3BQ7LBC6 1761 aa23.2■■□□□ 1.3
ATG4B-217ENST00000475693 ASAP1Q9ULH1 1129 aa23.19■■□□□ 1.3
ATG4B-217ENST00000475693 ATRNO75882 1429 aa23.19■■□□□ 1.3
ATG4B-217ENST00000475693 PTCD1O75127 700 aaKnown RBP23.18■■□□□ 1.3
ATG4B-217ENST00000475693 ANXA1P04083 346 aa23.18■■□□□ 1.3
ATG4B-217ENST00000475693 TMOD3Q9NYL9 352 aa23.18■■□□□ 1.3
ATG4B-217ENST00000475693 KCNQ2O43526 872 aa23.18■■□□□ 1.3
ATG4B-217ENST00000475693 ALDH1L2Q3SY69 923 aa23.18■■□□□ 1.3
ATG4B-217ENST00000475693 G2E3Q7L622 706 aa23.18■■□□□ 1.3
ATG4B-217ENST00000475693 GIGYF1O75420 1035 aaPredicted RBP23.17■■□□□ 1.3
ATG4B-217ENST00000475693 SLC4A2P04920 1241 aa23.17■■□□□ 1.3
ATG4B-217ENST00000475693 PTF1AQ7RTS3 328 aa23.17■■□□□ 1.3
ATG4B-217ENST00000475693 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.17■■□□□ 1.3
ATG4B-217ENST00000475693 MRC1P22897 1456 aa23.17■■□□□ 1.3
ATG4B-217ENST00000475693 SEPT12Q8IYM1 358 aa23.16■■□□□ 1.3
ATG4B-217ENST00000475693 TTC5Q8N0Z6 440 aa23.16■■□□□ 1.3
ATG4B-217ENST00000475693 TRIM27P14373 513 aa23.16■■□□□ 1.3
ATG4B-217ENST00000475693 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.16■■□□□ 1.3
ATG4B-217ENST00000475693 PIP4K2AP48426 406 aaPredicted RBP23.15■■□□□ 1.3
ATG4B-217ENST00000475693 HDGFL1Q5TGJ6 251 aa23.15■■□□□ 1.3
ATG4B-217ENST00000475693 COG6Q9Y2V7 657 aa23.15■■□□□ 1.3
ATG4B-217ENST00000475693 ERICH6BQ5W0A0 696 aa23.14■■□□□ 1.29
ATG4B-217ENST00000475693 ZKSCAN2Q63HK3 967 aa23.14■■□□□ 1.29
ATG4B-217ENST00000475693 USP16Q9Y5T5 823 aa23.14■■□□□ 1.29
ATG4B-217ENST00000475693 ATG3Q9NT62 314 aa23.13■■□□□ 1.29
ATG4B-217ENST00000475693 HEG1Q9ULI3 1381 aa23.12■■□□□ 1.29
ATG4B-217ENST00000475693 PROSER3Q2NL68 480 aa23.12■■□□□ 1.29
ATG4B-217ENST00000475693 ZNF428Q96B54 188 aa23.12■■□□□ 1.29
ATG4B-217ENST00000475693 CHPF2Q9P2E5 772 aa23.12■■□□□ 1.29
ATG4B-217ENST00000475693 RGS17Q9UGC6 210 aaPredicted RBP23.12■■□□□ 1.29
ATG4B-217ENST00000475693 PHAXQ9H814 394 aaKnown RBP23.12■■□□□ 1.29
ATG4B-217ENST00000475693 ITGB4P16144 1822 aa23.11■■□□□ 1.29
ATG4B-217ENST00000475693 ATF7IPQ6VMQ6 1270 aa23.11■■□□□ 1.29
ATG4B-217ENST00000475693 RBM19Q9Y4C8 960 aaKnown RBP23.11■■□□□ 1.29
ATG4B-217ENST00000475693 ONECUT3O60422 494 aaPredicted RBP23.1■■□□□ 1.29
ATG4B-217ENST00000475693 CCDC30Q5VVM6 783 aa23.1■■□□□ 1.29
ATG4B-217ENST00000475693 FMNL2Q96PY5 1086 aa23.1■■□□□ 1.29
ATG4B-217ENST00000475693 RBM42Q9BTD8 480 aaKnown RBP23.09■■□□□ 1.29
ATG4B-217ENST00000475693 BCL9O00512 1426 aa23.09■■□□□ 1.29
ATG4B-217ENST00000475693 B4GALNT3Q6L9W6 998 aa23.09■■□□□ 1.29
ATG4B-217ENST00000475693 DOT1LQ8TEK3 1739 aa23.09■■□□□ 1.29
ATG4B-217ENST00000475693 THSD7AQ9UPZ6 1657 aa23.08■■□□□ 1.29
ATG4B-217ENST00000475693 DZIP1LQ8IYY4 767 aaKnown RBP23.08■■□□□ 1.29
ATG4B-217ENST00000475693 STK31Q9BXU1 1019 aa23.08■■□□□ 1.29
ATG4B-217ENST00000475693 KIF16BQ96L93 1317 aa23.08■■□□□ 1.28
ATG4B-217ENST00000475693 F6X3S4 739 aa23.08■■□□□ 1.28
ATG4B-217ENST00000475693 FTSJ3Q8IY81 847 aaKnown RBP23.08■■□□□ 1.28
ATG4B-217ENST00000475693 BRPF1P55201 1214 aaPredicted RBP23.07■■□□□ 1.28
ATG4B-217ENST00000475693 TMEM57Q8N5G2 664 aa23.07■■□□□ 1.28
ATG4B-217ENST00000475693 SLC4A9Q96Q91 983 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms