RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 GPR162Q16538 588 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 CC2D1BQ5T0F9 858 aaKnown RBP16.05■□□□□ 0.16
CLIP2-204ENST00000474962 ZNF530Q6P9A1 599 aaPredicted RBP16.05■□□□□ 0.16
CLIP2-204ENST00000474962 FLAD1Q8NFF5 587 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 NLGN2Q8NFZ4 835 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 DCAF5Q96JK2 942 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 AK7Q96M32 723 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 TUBGCP6Q96RT7 1819 aa16.05■□□□□ 0.16
CLIP2-204ENST00000474962 MAP3K5Q99683 1374 aa16.04■□□□□ 0.16
CLIP2-204ENST00000474962 PHF14O94880 888 aa16.04■□□□□ 0.16
CLIP2-204ENST00000474962 AMOTQ4VCS5 1084 aa16.04■□□□□ 0.16
CLIP2-204ENST00000474962 QSER1Q2KHR3 1735 aa16.03■□□□□ 0.16
CLIP2-204ENST00000474962 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.03■□□□□ 0.16
CLIP2-204ENST00000474962 SLC4A9Q96Q91 983 aa16.03■□□□□ 0.16
CLIP2-204ENST00000474962 HSP90AB1P08238 724 aaKnown RBP16.02■□□□□ 0.16
CLIP2-204ENST00000474962 CABP4P57796 275 aa16.02■□□□□ 0.16
CLIP2-204ENST00000474962 PELP1Q8IZL8 1130 aaKnown RBP16.02■□□□□ 0.16
CLIP2-204ENST00000474962 NFATC2IPQ8NCF5 419 aa16.02■□□□□ 0.16
CLIP2-204ENST00000474962 RBM42Q9BTD8 480 aaKnown RBP16.02■□□□□ 0.16
CLIP2-204ENST00000474962 DDX10Q13206 875 aaKnown RBP16.01■□□□□ 0.15
CLIP2-204ENST00000474962 C5P01031 1676 aa16■□□□□ 0.15
CLIP2-204ENST00000474962 GNPATO15228 680 aa16■□□□□ 0.15
CLIP2-204ENST00000474962 HMOX1P09601 288 aa16■□□□□ 0.15
CLIP2-204ENST00000474962 C1orf141Q5JVX7 400 aa16■□□□□ 0.15
CLIP2-204ENST00000474962 TAF1LQ8IZX4 1826 aa15.99■□□□□ 0.15
CLIP2-204ENST00000474962 C4BP0C0L5 1744 aa15.99■□□□□ 0.15
CLIP2-204ENST00000474962 COL24A1Q17RW2 1714 aa15.99■□□□□ 0.15
CLIP2-204ENST00000474962 PLEKHG2Q9H7P9 1386 aa15.99■□□□□ 0.15
CLIP2-204ENST00000474962 KDM6AO15550 1401 aaPredicted RBP15.98■□□□□ 0.15
CLIP2-204ENST00000474962 PTCD1O75127 700 aaKnown RBP15.98■□□□□ 0.15
CLIP2-204ENST00000474962 SSFA2P28290 1259 aa15.98■□□□□ 0.15
CLIP2-204ENST00000474962 ZNF784Q8NCA9 323 aaPredicted RBP15.98■□□□□ 0.15
CLIP2-204ENST00000474962 LGR6Q9HBX8 967 aa15.98■□□□□ 0.15
CLIP2-204ENST00000474962 YBX3P16989 372 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLIP2-204ENST00000474962 KDRP35968 1356 aa15.97■□□□□ 0.15
CLIP2-204ENST00000474962 DIAPH1O60610 1272 aaKnown RBP15.96■□□□□ 0.15
CLIP2-204ENST00000474962 TRAPPC3LQ5T215 181 aa15.96■□□□□ 0.15
CLIP2-204ENST00000474962 CD2APQ9Y5K6 639 aa15.96■□□□□ 0.15
CLIP2-204ENST00000474962 AKAP4Q5JQC9 854 aa15.95■□□□□ 0.14
CLIP2-204ENST00000474962 RTCBQ9Y3I0 505 aaKnown RBP15.95■□□□□ 0.14
CLIP2-204ENST00000474962 MTHFSDQ2M296 383 aaKnown RBP15.94■□□□□ 0.14
CLIP2-204ENST00000474962 RC3H1Q5TC82 1133 aaKnown RBP15.94■□□□□ 0.14
CLIP2-204ENST00000474962 ARHGEF1Q92888 912 aaKnown RBP15.94■□□□□ 0.14
CLIP2-204ENST00000474962 UBR3Q6ZT12 1888 aa15.93■□□□□ 0.14
CLIP2-204ENST00000474962 RNMTO43148 476 aaKnown RBP15.92■□□□□ 0.14
CLIP2-204ENST00000474962 RPS6KA4O75676 772 aa15.92■□□□□ 0.14
CLIP2-204ENST00000474962 MMP10P09238 476 aa15.92■□□□□ 0.14
CLIP2-204ENST00000474962 WWC3Q9ULE0 1092 aa15.92■□□□□ 0.14
CLIP2-204ENST00000474962 U2SURPO15042 1029 aaKnown RBP15.91■□□□□ 0.14
CLIP2-204ENST00000474962 SLC39A6Q13433 755 aa15.91■□□□□ 0.14
CLIP2-204ENST00000474962 SLC52A2Q9HAB3 445 aa15.91■□□□□ 0.14
CLIP2-204ENST00000474962 NPC1L1Q9UHC9 1359 aa15.9■□□□□ 0.14
CLIP2-204ENST00000474962 GRIN3BO60391 1043 aa15.9■□□□□ 0.14
CLIP2-204ENST00000474962 RFC4P35249 363 aa15.9■□□□□ 0.14
CLIP2-204ENST00000474962 CRKLP46109 303 aaKnown RBP15.9■□□□□ 0.14
CLIP2-204ENST00000474962 CNTNAP4Q9C0A0 1308 aa15.9■□□□□ 0.14
CLIP2-204ENST00000474962 NLGN1Q8N2Q7 840 aa15.89■□□□□ 0.13
CLIP2-204ENST00000474962 GYS1P13807 737 aa15.88■□□□□ 0.13
CLIP2-204ENST00000474962 INTS5Q6P9B9 1019 aaKnown RBP15.88■□□□□ 0.13
CLIP2-204ENST00000474962 DNAJC10Q8IXB1 793 aa15.88■□□□□ 0.13
CLIP2-204ENST00000474962 CHD4Q14839 1912 aa15.88■□□□□ 0.13
CLIP2-204ENST00000474962 SRP68Q9UHB9 627 aaKnown RBP15.87■□□□□ 0.13
CLIP2-204ENST00000474962 PHACTR3Q96KR7 559 aa15.86■□□□□ 0.13
CLIP2-204ENST00000474962 MYH14Q7Z406 1995 aaKnown RBP15.86■□□□□ 0.13
CLIP2-204ENST00000474962 A0A0G2JLW4 131 aa15.85■□□□□ 0.13
CLIP2-204ENST00000474962 IL17REQ8NFR9 667 aa15.85■□□□□ 0.13
CLIP2-204ENST00000474962 CYP19A1P11511 503 aaPredicted RBP15.84■□□□□ 0.13
CLIP2-204ENST00000474962 FKBP8Q14318 412 aa15.84■□□□□ 0.13
CLIP2-204ENST00000474962 COL3A1P02461 1466 aaPredicted RBP15.84■□□□□ 0.13
CLIP2-204ENST00000474962 SCN11AQ9UI33 1791 aa15.83■□□□□ 0.12
CLIP2-204ENST00000474962 GNAT3A8MTJ3 354 aa15.83■□□□□ 0.12
CLIP2-204ENST00000474962 PPP2R1AP30153 589 aa15.83■□□□□ 0.12
CLIP2-204ENST00000474962 CCDC87Q9NVE4 849 aa15.83■□□□□ 0.12
CLIP2-204ENST00000474962 RNF216Q9NWF9 866 aaPredicted RBP15.83■□□□□ 0.12
CLIP2-204ENST00000474962 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.12
CLIP2-204ENST00000474962 RALBP1Q15311 655 aa15.82■□□□□ 0.12
CLIP2-204ENST00000474962 CFAP53Q96M91 514 aa15.82■□□□□ 0.12
CLIP2-204ENST00000474962 PARP3Q9Y6F1 533 aa15.82■□□□□ 0.12
CLIP2-204ENST00000474962 COL5A3P25940 1745 aaPredicted RBP15.81■□□□□ 0.12
CLIP2-204ENST00000474962 PRKAR2BP31323 418 aa15.81■□□□□ 0.12
CLIP2-204ENST00000474962 TGFB2P61812 414 aa15.81■□□□□ 0.12
CLIP2-204ENST00000474962 GAS2L2Q8NHY3 880 aa15.81■□□□□ 0.12
CLIP2-204ENST00000474962 RSPH6AQ9H0K4 717 aa15.81■□□□□ 0.12
CLIP2-204ENST00000474962 USP42Q9H9J4 1324 aaKnown RBP15.81■□□□□ 0.12
CLIP2-204ENST00000474962 ANP32CO43423 234 aa15.8■□□□□ 0.12
CLIP2-204ENST00000474962 U2AF1L5P0DN76 240 aaPredicted RBP15.8■□□□□ 0.12
CLIP2-204ENST00000474962 DPEP1P16444 411 aa15.8■□□□□ 0.12
CLIP2-204ENST00000474962 U2AF1Q01081 240 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLIP2-204ENST00000474962 DDR1Q08345 913 aa15.8■□□□□ 0.12
CLIP2-204ENST00000474962 USPL1Q5W0Q7 1092 aa15.8■□□□□ 0.12
CLIP2-204ENST00000474962 SOS1Q07889 1333 aaPredicted RBP15.79■□□□□ 0.12
CLIP2-204ENST00000474962 ZPR1O75312 459 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 KCNA3P22001 575 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 TM4SF1P30408 202 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 C1QTNF8P60827 252 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 TEFQ10587 303 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 VSIG10Q8N0Z9 540 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 ZNF496Q96IT1 587 aaPredicted RBP15.79■□□□□ 0.12
CLIP2-204ENST00000474962 NUDCQ9Y266 331 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 ZBTB1Q9Y2K1 713 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms