RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MSH5O43196 834 aa25.23■■□□□ 1.63
COL7A1-209ENST00000474432 HMGB2P26583 209 aaKnown RBP25.23■■□□□ 1.63
COL7A1-209ENST00000474432 MSL1Q68DK7 614 aa25.22■■□□□ 1.63
COL7A1-209ENST00000474432 FLAD1Q8NFF5 587 aa25.22■■□□□ 1.63
COL7A1-209ENST00000474432 SCN11AQ9UI33 1791 aa25.22■■□□□ 1.63
COL7A1-209ENST00000474432 ATP6V1AP38606 617 aa25.21■■□□□ 1.63
COL7A1-209ENST00000474432 AK7Q96M32 723 aa25.21■■□□□ 1.63
COL7A1-209ENST00000474432 DCAF8L1A6NGE4 600 aa25.2■■□□□ 1.62
COL7A1-209ENST00000474432 HMOX1P09601 288 aa25.19■■□□□ 1.62
COL7A1-209ENST00000474432 YY1P25490 414 aa25.19■■□□□ 1.62
COL7A1-209ENST00000474432 COL5A3P25940 1745 aaPredicted RBP25.19■■□□□ 1.62
COL7A1-209ENST00000474432 UTRNP46939 3433 aa25.19■■□□□ 1.62
COL7A1-209ENST00000474432 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.18■■□□□ 1.62
COL7A1-209ENST00000474432 DIAPH1O60610 1272 aaKnown RBP25.18■■□□□ 1.62
COL7A1-209ENST00000474432 C1orf141Q5JVX7 400 aa25.18■■□□□ 1.62
COL7A1-209ENST00000474432 CABP4P57796 275 aa25.17■■□□□ 1.62
COL7A1-209ENST00000474432 NLGN2Q8NFZ4 835 aa25.17■■□□□ 1.62
COL7A1-209ENST00000474432 VIRMAQ69YN4 1812 aaKnown RBP25.16■■□□□ 1.62
COL7A1-209ENST00000474432 PHF14O94880 888 aa25.16■■□□□ 1.62
COL7A1-209ENST00000474432 SSFA2P28290 1259 aa25.16■■□□□ 1.62
COL7A1-209ENST00000474432 CNGB1Q14028 1251 aaPredicted RBP25.16■■□□□ 1.62
COL7A1-209ENST00000474432 NFATC2IPQ8NCF5 419 aa25.16■■□□□ 1.62
COL7A1-209ENST00000474432 ADAMTS7Q9UKP4 1686 aa25.16■■□□□ 1.62
COL7A1-209ENST00000474432 MYH14Q7Z406 1995 aaKnown RBP25.15■■□□□ 1.62
COL7A1-209ENST00000474432 KLHL34Q8N239 644 aa25.15■■□□□ 1.62
COL7A1-209ENST00000474432 AKAP4Q5JQC9 854 aa25.14■■□□□ 1.62
COL7A1-209ENST00000474432 LGR6Q9HBX8 967 aa25.14■■□□□ 1.62
COL7A1-209ENST00000474432 GNPATO15228 680 aa25.13■■□□□ 1.61
COL7A1-209ENST00000474432 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
COL7A1-209ENST00000474432 MTHFSDQ2M296 383 aaKnown RBP25.12■■□□□ 1.61
COL7A1-209ENST00000474432 MRC1P22897 1456 aa25.12■■□□□ 1.61
COL7A1-209ENST00000474432 CHD4Q14839 1912 aa25.12■■□□□ 1.61
COL7A1-209ENST00000474432 TJP1Q07157 1748 aa25.12■■□□□ 1.61
COL7A1-209ENST00000474432 CICQ96RK0 1608 aaPredicted RBP25.12■■□□□ 1.61
COL7A1-209ENST00000474432 RC3H1Q5TC82 1133 aaKnown RBP25.1■■□□□ 1.61
COL7A1-209ENST00000474432 RNMTO43148 476 aaKnown RBP25.09■■□□□ 1.61
COL7A1-209ENST00000474432 CNTNAP4Q9C0A0 1308 aa25.09■■□□□ 1.61
COL7A1-209ENST00000474432 PTCD1O75127 700 aaKnown RBP25.08■■□□□ 1.61
COL7A1-209ENST00000474432 SLC52A2Q9HAB3 445 aa25.08■■□□□ 1.61
COL7A1-209ENST00000474432 CD2APQ9Y5K6 639 aa25.06■■□□□ 1.6
COL7A1-209ENST00000474432 RPS6KA4O75676 772 aa25.05■■□□□ 1.6
COL7A1-209ENST00000474432 GPR162Q16538 588 aa25.05■■□□□ 1.6
COL7A1-209ENST00000474432 RTCBQ9Y3I0 505 aaKnown RBP25.05■■□□□ 1.6
COL7A1-209ENST00000474432 C4AP0C0L4 1744 aa25.05■■□□□ 1.6
COL7A1-209ENST00000474432 GOLGB1Q14789 3259 aaKnown RBP25.05■■□□□ 1.6
COL7A1-209ENST00000474432 U2SURPO15042 1029 aaKnown RBP25.04■■□□□ 1.6
COL7A1-209ENST00000474432 YBX3P16989 372 aaKnown RBP eCLIP25.04■■□□□ 1.6
COL7A1-209ENST00000474432 ARHGEF1Q92888 912 aaKnown RBP25.04■■□□□ 1.6
COL7A1-209ENST00000474432 KCPQ6ZWJ8 1503 aa25.03■■□□□ 1.6
COL7A1-209ENST00000474432 PPP2R1AP30153 589 aa25.03■■□□□ 1.6
COL7A1-209ENST00000474432 TRAPPC3LQ5T215 181 aa25.03■■□□□ 1.6
COL7A1-209ENST00000474432 SLC39A6Q13433 755 aa25.02■■□□□ 1.6
COL7A1-209ENST00000474432 ADRA2BP18089 450 aa25.01■■□□□ 1.59
COL7A1-209ENST00000474432 CRKLP46109 303 aaKnown RBP25.01■■□□□ 1.59
COL7A1-209ENST00000474432 UBR2Q8IWV8 1755 aa25■■□□□ 1.59
COL7A1-209ENST00000474432 INTS5Q6P9B9 1019 aaKnown RBP25■■□□□ 1.59
COL7A1-209ENST00000474432 SIPA1L3O60292 1781 aaPredicted RBP25■■□□□ 1.59
COL7A1-209ENST00000474432 GYS1P13807 737 aa24.99■■□□□ 1.59
COL7A1-209ENST00000474432 DNAJC10Q8IXB1 793 aa24.99■■□□□ 1.59
COL7A1-209ENST00000474432 PELP1Q8IZL8 1130 aaKnown RBP24.99■■□□□ 1.59
COL7A1-209ENST00000474432 IL17REQ8NFR9 667 aa24.99■■□□□ 1.59
COL7A1-209ENST00000474432 PHACTR3Q96KR7 559 aa24.99■■□□□ 1.59
COL7A1-209ENST00000474432 RSPH6AQ9H0K4 717 aa24.99■■□□□ 1.59
COL7A1-209ENST00000474432 KIF13BQ9NQT8 1826 aa24.98■■□□□ 1.59
COL7A1-209ENST00000474432 MMP10P09238 476 aa24.98■■□□□ 1.59
COL7A1-209ENST00000474432 KIAA1551Q9HCM1 1747 aa24.98■■□□□ 1.59
COL7A1-209ENST00000474432 ZNF784Q8NCA9 323 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-209ENST00000474432 NLGN1Q8N2Q7 840 aa24.96■■□□□ 1.59
COL7A1-209ENST00000474432 CFAP53Q96M91 514 aa24.96■■□□□ 1.59
COL7A1-209ENST00000474432 PRKAR2BP31323 418 aa24.95■■□□□ 1.58
COL7A1-209ENST00000474432 GAS2L2Q8NHY3 880 aa24.95■■□□□ 1.58
COL7A1-209ENST00000474432 GNAT3A8MTJ3 354 aa24.94■■□□□ 1.58
COL7A1-209ENST00000474432 CYP19A1P11511 503 aaPredicted RBP24.94■■□□□ 1.58
COL7A1-209ENST00000474432 RFC4P35249 363 aa24.94■■□□□ 1.58
COL7A1-209ENST00000474432 SRP68Q9UHB9 627 aaKnown RBP24.93■■□□□ 1.58
COL7A1-209ENST00000474432 CEMIPQ8WUJ3 1361 aa24.93■■□□□ 1.58
COL7A1-209ENST00000474432 CCDC87Q9NVE4 849 aa24.92■■□□□ 1.58
COL7A1-209ENST00000474432 USP42Q9H9J4 1324 aaKnown RBP24.91■■□□□ 1.58
COL7A1-209ENST00000474432 GRIN3BO60391 1043 aa24.91■■□□□ 1.58
COL7A1-209ENST00000474432 SOS1Q07889 1333 aaPredicted RBP24.9■■□□□ 1.58
COL7A1-209ENST00000474432 C10orf71Q711Q0 1435 aa24.9■■□□□ 1.58
COL7A1-209ENST00000474432 VSIG10Q8N0Z9 540 aa24.9■■□□□ 1.58
COL7A1-209ENST00000474432 NUDCQ9Y266 331 aa24.9■■□□□ 1.58
COL7A1-209ENST00000474432 PXDNLA1KZ92 1463 aa24.89■■□□□ 1.58
COL7A1-209ENST00000474432 U2AF1L5P0DN76 240 aaPredicted RBP24.89■■□□□ 1.58
COL7A1-209ENST00000474432 U2AF1Q01081 240 aaKnown RBP eCLIP24.89■■□□□ 1.58
COL7A1-209ENST00000474432 FKBP8Q14318 412 aa24.89■■□□□ 1.58
COL7A1-209ENST00000474432 N4BP2Q86UW6 1770 aaPredicted RBP24.89■■□□□ 1.57
COL7A1-209ENST00000474432 ZBTB1Q9Y2K1 713 aa24.88■■□□□ 1.57
COL7A1-209ENST00000474432 FCHSD2O94868 740 aa24.87■■□□□ 1.57
COL7A1-209ENST00000474432 ZNF496Q96IT1 587 aaPredicted RBP24.87■■□□□ 1.57
COL7A1-209ENST00000474432 WWC3Q9ULE0 1092 aa24.87■■□□□ 1.57
COL7A1-209ENST00000474432 DDR1Q08345 913 aa24.86■■□□□ 1.57
COL7A1-209ENST00000474432 TEFQ10587 303 aa24.86■■□□□ 1.57
COL7A1-209ENST00000474432 ZNF790Q6PG37 636 aa24.86■■□□□ 1.57
COL7A1-209ENST00000474432 HEG1Q9ULI3 1381 aa24.84■■□□□ 1.57
COL7A1-209ENST00000474432 BRCA1P38398 1863 aaKnown RBP24.84■■□□□ 1.57
COL7A1-209ENST00000474432 KCNQ3O43525 872 aa24.84■■□□□ 1.57
COL7A1-209ENST00000474432 TM4SF1P30408 202 aa24.84■■□□□ 1.57
COL7A1-209ENST00000474432 TGFB2P61812 414 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms