RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 AMIGO3Q86WK7 504 aa7.25□□□□□ -1.25
SNRNP40-204ENST00000474025 USHBP1Q8N6Y0 703 aa7.25□□□□□ -1.25
SNRNP40-204ENST00000474025 SMG6Q86US8 1419 aaKnown RBP7.25□□□□□ -1.25
SNRNP40-204ENST00000474025 PCDH11XQ9BZA7 1347 aa7.25□□□□□ -1.25
SNRNP40-204ENST00000474025 PCDH11YQ9BZA8 1340 aa7.25□□□□□ -1.25
SNRNP40-204ENST00000474025 C4BP0C0L5 1744 aa7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 POTEIP0CG38 1075 aa7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 FLAD1Q8NFF5 587 aa7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 ZNF526Q8TF50 670 aaPredicted RBP7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 RAPGEF4Q8WZA2 1011 aa7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 IGSF1Q8N6C5 1336 aa7.24□□□□□ -1.25
SNRNP40-204ENST00000474025 INSRP06213 1382 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 CYP27B1O15528 508 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 TATP17735 454 aaPredicted RBP7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 HSP90AB2PQ58FF8 381 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 MPRIPQ6WCQ1 1025 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 NSD3Q9BZ95 1437 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 UBR3Q6ZT12 1888 aa7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 CICQ96RK0 1608 aaPredicted RBP7.23□□□□□ -1.25
SNRNP40-204ENST00000474025 FLT4P35916 1363 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 PKD1L3Q7Z443 1732 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 NCAPD2Q15021 1401 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 ST20-MTHFSA0A0A6YYL1 179 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 FYB1O15117 783 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 SMIM5Q71RC9 77 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 AK7Q96M32 723 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 GGNBP2Q9H3C7 697 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 WWC3Q9ULE0 1092 aa7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 MAP2P11137 1827 aaKnown RBP7.22□□□□□ -1.25
SNRNP40-204ENST00000474025 KIF24Q5T7B8 1368 aa7.21□□□□□ -1.25
SNRNP40-204ENST00000474025 KIF3CO14782 793 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 PHF14O94880 888 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 SSFA2P28290 1259 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 PIGBQ92521 554 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 SMARCC1Q92922 1105 aaPredicted RBP7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 DCBLD2Q96PD2 775 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 ITGB4P16144 1822 aa7.21□□□□□ -1.26
SNRNP40-204ENST00000474025 TONSLQ96HA7 1378 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 PXDNLA1KZ92 1463 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 LOC102724428A0A0B4J2F2 783 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 PRELPP51888 382 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 SIK1P57059 783 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 NKX1-1Q15270 411 aaPredicted RBP7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 LHX8Q68G74 356 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 LINC00116Q8NCU8 138 aa7.2□□□□□ -1.26
SNRNP40-204ENST00000474025 KIAA1551Q9HCM1 1747 aa7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 ITPK1Q13572 414 aa7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 AMER1Q5JTC6 1135 aaPredicted RBP7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 PCDH10Q9P2E7 1040 aa7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 EMILIN1Q9Y6C2 1016 aa7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 KIF20BQ96Q89 1820 aa7.19□□□□□ -1.26
SNRNP40-204ENST00000474025 C10orf71Q711Q0 1435 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 ANKRD26Q9UPS8 1709 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 KIF13BQ9NQT8 1826 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 GNPATO15228 680 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 GALR2O43603 387 aaPredicted RBP7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 MMP10P09238 476 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 DNAJC5GQ8N7S2 189 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 ASAP1Q9ULH1 1129 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 KDRP35968 1356 aa7.18□□□□□ -1.26
SNRNP40-204ENST00000474025 TOMM70O94826 608 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 TMF1P82094 1093 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 TNS4Q8IZW8 715 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 MIER1Q8N108 512 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 PHF12Q96QT6 1004 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 TMOD3Q9NYL9 352 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 SPG7Q9UQ90 795 aa7.17□□□□□ -1.26
SNRNP40-204ENST00000474025 PHKG2P15735 406 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 ATP6V1AP38606 617 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 TGFB2P61812 414 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 FKBP8Q14318 412 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 EYA1Q99502 592 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 CARD14Q9BXL6 1004 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 RTN4Q9NQC3 1192 aaKnown RBP7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 ATG3Q9NT62 314 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 BCS1LQ9Y276 419 aa7.16□□□□□ -1.26
SNRNP40-204ENST00000474025 N4BP2Q86UW6 1770 aaPredicted RBP7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 A0A0G2JLW4 131 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 IFNL2Q8IZJ0 200 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 SLC4A9Q96Q91 983 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 NMRK2Q9NPI5 230 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 RTCBQ9Y3I0 505 aaKnown RBP7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 WASHC2AQ641Q2 1341 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 PLEKHG2Q9H7P9 1386 aa7.15□□□□□ -1.26
SNRNP40-204ENST00000474025 ZNF831Q5JPB2 1677 aa7.15□□□□□ -1.27
SNRNP40-204ENST00000474025 C4AP0C0L4 1744 aa7.15□□□□□ -1.27
SNRNP40-204ENST00000474025 BRCA1P38398 1863 aaKnown RBP7.15□□□□□ -1.27
SNRNP40-204ENST00000474025 PPM1GO15355 546 aaPredicted RBP7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 GYS1P13807 737 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 DPEP1P16444 411 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 KCNA3P22001 575 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 COL5A3P25940 1745 aaPredicted RBP7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 CDCA8Q53HL2 280 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 RC3H1Q5TC82 1133 aaKnown RBP7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 ARHGAP27Q6ZUM4 889 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 C16orf71Q8IYS4 520 aaPredicted RBP7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 NLGN1Q8N2Q7 840 aa7.14□□□□□ -1.27
SNRNP40-204ENST00000474025 JMYQ8N9B5 988 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms