RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.59■□□□□ 0.41
SHROOM3-204ENST00000473602 SPG7Q9UQ90 795 aa17.58■□□□□ 0.4
SHROOM3-204ENST00000473602 CC2D1BQ5T0F9 858 aaKnown RBP17.57■□□□□ 0.4
SHROOM3-204ENST00000473602 ITGB4P16144 1822 aa17.56■□□□□ 0.4
SHROOM3-204ENST00000473602 LOC102724428A0A0B4J2F2 783 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 SSFA2P28290 1259 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 SIK1P57059 783 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 LINC00116Q8NCU8 138 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 TOGARAM1Q9Y4F4 1720 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 C5P01031 1676 aa17.55■□□□□ 0.4
SHROOM3-204ENST00000473602 KIF3CO14782 793 aa17.54■□□□□ 0.4
SHROOM3-204ENST00000473602 MTHFSP49914 203 aa17.54■□□□□ 0.4
SHROOM3-204ENST00000473602 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
SHROOM3-204ENST00000473602 KDRP35968 1356 aa17.53■□□□□ 0.4
SHROOM3-204ENST00000473602 IL13P35225 146 aa17.52■□□□□ 0.4
SHROOM3-204ENST00000473602 ASAP1Q9ULH1 1129 aa17.52■□□□□ 0.4
SHROOM3-204ENST00000473602 C4BP0C0L5 1744 aa17.52■□□□□ 0.39
SHROOM3-204ENST00000473602 GNPATO15228 680 aa17.51■□□□□ 0.39
SHROOM3-204ENST00000473602 ITPK1Q13572 414 aa17.51■□□□□ 0.39
SHROOM3-204ENST00000473602 TMOD3Q9NYL9 352 aa17.51■□□□□ 0.39
SHROOM3-204ENST00000473602 MMP10P09238 476 aa17.5■□□□□ 0.39
SHROOM3-204ENST00000473602 ATP6V1AP38606 617 aa17.5■□□□□ 0.39
SHROOM3-204ENST00000473602 IFNL2Q8IZJ0 200 aa17.5■□□□□ 0.39
SHROOM3-204ENST00000473602 PHKG2P15735 406 aa17.49■□□□□ 0.39
SHROOM3-204ENST00000473602 AMOTQ4VCS5 1084 aa17.49■□□□□ 0.39
SHROOM3-204ENST00000473602 PLEKHO1Q53GL0 409 aaPredicted RBP17.49■□□□□ 0.39
SHROOM3-204ENST00000473602 COL3A1P02461 1466 aaPredicted RBP17.49■□□□□ 0.39
SHROOM3-204ENST00000473602 TAF1LQ8IZX4 1826 aa17.49■□□□□ 0.39
SHROOM3-204ENST00000473602 SULT6B1Q6IMI4 303 aa17.48■□□□□ 0.39
SHROOM3-204ENST00000473602 A0A0G2JLW4 131 aa17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 DIAPH1O60610 1272 aaKnown RBP17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 HSP90AB1P08238 724 aaKnown RBP17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 APLP1P51693 650 aa17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 ATG3Q9NT62 314 aa17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 BCS1LQ9Y276 419 aa17.47■□□□□ 0.39
SHROOM3-204ENST00000473602 TGFB2P61812 414 aa17.46■□□□□ 0.39
SHROOM3-204ENST00000473602 TRAPPC3LQ5T215 181 aa17.46■□□□□ 0.39
SHROOM3-204ENST00000473602 AEBP1Q8IUX7 1158 aa17.46■□□□□ 0.39
SHROOM3-204ENST00000473602 TOMM70O94826 608 aa17.45■□□□□ 0.38
SHROOM3-204ENST00000473602 ZEB1P37275 1124 aaPredicted RBP17.45■□□□□ 0.38
SHROOM3-204ENST00000473602 CNGB1Q14028 1251 aaPredicted RBP17.45■□□□□ 0.38
SHROOM3-204ENST00000473602 ARHGAP27Q6ZUM4 889 aa17.45■□□□□ 0.38
SHROOM3-204ENST00000473602 RTCBQ9Y3I0 505 aaKnown RBP17.45■□□□□ 0.38
SHROOM3-204ENST00000473602 UBR3Q6ZT12 1888 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 NLGN1Q8N2Q7 840 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 DNAJC5GQ8N7S2 189 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 DCAF5Q96JK2 942 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 PXDNLA1KZ92 1463 aa17.44■□□□□ 0.38
SHROOM3-204ENST00000473602 SCN11AQ9UI33 1791 aa17.43■□□□□ 0.38
SHROOM3-204ENST00000473602 ZNF530Q6P9A1 599 aaPredicted RBP17.43■□□□□ 0.38
SHROOM3-204ENST00000473602 VIRMAQ69YN4 1812 aaKnown RBP17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 DPEP1P16444 411 aa17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 C1orf141Q5JVX7 400 aa17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 ARHGEF1Q92888 912 aaKnown RBP17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 SLC4A9Q96Q91 983 aa17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 NMRK2Q9NPI5 230 aa17.42■□□□□ 0.38
SHROOM3-204ENST00000473602 ERVV-2B6SEH9 535 aa17.41■□□□□ 0.38
SHROOM3-204ENST00000473602 FCHSD2O94868 740 aa17.41■□□□□ 0.38
SHROOM3-204ENST00000473602 PPP2R1AP30153 589 aa17.41■□□□□ 0.38
SHROOM3-204ENST00000473602 RBM42Q9BTD8 480 aaKnown RBP17.41■□□□□ 0.38
SHROOM3-204ENST00000473602 KDM6AO15550 1401 aaPredicted RBP17.4■□□□□ 0.38
SHROOM3-204ENST00000473602 HMOX1P09601 288 aa17.4■□□□□ 0.38
SHROOM3-204ENST00000473602 CCDC87Q9NVE4 849 aa17.4■□□□□ 0.38
SHROOM3-204ENST00000473602 ZNF831Q5JPB2 1677 aa17.39■□□□□ 0.37
SHROOM3-204ENST00000473602 GYS1P13807 737 aa17.39■□□□□ 0.37
SHROOM3-204ENST00000473602 RFC4P35249 363 aa17.39■□□□□ 0.37
SHROOM3-204ENST00000473602 RC3H1Q5TC82 1133 aaKnown RBP17.39■□□□□ 0.37
SHROOM3-204ENST00000473602 CICQ96RK0 1608 aaPredicted RBP17.39■□□□□ 0.37
SHROOM3-204ENST00000473602 C9orf131Q5VYM1 1079 aa17.38■□□□□ 0.37
SHROOM3-204ENST00000473602 PARP3Q9Y6F1 533 aa17.38■□□□□ 0.37
SHROOM3-204ENST00000473602 ADAMTS7Q9UKP4 1686 aa17.38■□□□□ 0.37
SHROOM3-204ENST00000473602 C10orf71Q711Q0 1435 aa17.38■□□□□ 0.37
SHROOM3-204ENST00000473602 U2SURPO15042 1029 aaKnown RBP17.37■□□□□ 0.37
SHROOM3-204ENST00000473602 RPS6KA4O75676 772 aa17.37■□□□□ 0.37
SHROOM3-204ENST00000473602 KCNA3P22001 575 aa17.37■□□□□ 0.37
SHROOM3-204ENST00000473602 AKAP4Q5JQC9 854 aa17.37■□□□□ 0.37
SHROOM3-204ENST00000473602 NUDCQ9Y266 331 aa17.37■□□□□ 0.37
SHROOM3-204ENST00000473602 RBM46Q8TBY0 533 aaKnown RBP17.36■□□□□ 0.37
SHROOM3-204ENST00000473602 CABP4P57796 275 aa17.35■□□□□ 0.37
SHROOM3-204ENST00000473602 HTRA3P83110 453 aa17.35■□□□□ 0.37
SHROOM3-204ENST00000473602 C16orf71Q8IYS4 520 aaPredicted RBP17.35■□□□□ 0.37
SHROOM3-204ENST00000473602 CNTNAP4Q9C0A0 1308 aa17.35■□□□□ 0.37
SHROOM3-204ENST00000473602 MRC1P22897 1456 aa17.35■□□□□ 0.37
SHROOM3-204ENST00000473602 PIM2Q9P1W9 311 aa17.34■□□□□ 0.37
SHROOM3-204ENST00000473602 MTHFSDQ2M296 383 aaKnown RBP17.33■□□□□ 0.36
SHROOM3-204ENST00000473602 PTCD1O75127 700 aaKnown RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 DDX10Q13206 875 aaKnown RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 RALBP1Q15311 655 aa17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 DALRD3Q5D0E6 543 aaKnown RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 GAS2L2Q8NHY3 880 aa17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 SRP68Q9UHB9 627 aaKnown RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 N4BP2Q86UW6 1770 aaPredicted RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 COL5A3P25940 1745 aaPredicted RBP17.32■□□□□ 0.36
SHROOM3-204ENST00000473602 FKBP8Q14318 412 aa17.31■□□□□ 0.36
SHROOM3-204ENST00000473602 KLRG1Q96E93 195 aa17.31■□□□□ 0.36
SHROOM3-204ENST00000473602 KIF13BQ9NQT8 1826 aa17.31■□□□□ 0.36
SHROOM3-204ENST00000473602 KIAA1551Q9HCM1 1747 aa17.3■□□□□ 0.36
SHROOM3-204ENST00000473602 DDR1Q08345 913 aa17.3■□□□□ 0.36
SHROOM3-204ENST00000473602 FSTL1Q12841 308 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms