RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 VIRMAQ69YN4 1812 aaKnown RBP25.64■■□□□ 1.7
CCDC88B-206ENST00000473405 PLEKHO1Q53GL0 409 aaPredicted RBP25.63■■□□□ 1.69
CCDC88B-206ENST00000473405 ZNF530Q6P9A1 599 aaPredicted RBP25.63■■□□□ 1.69
CCDC88B-206ENST00000473405 NLGN2Q8NFZ4 835 aa25.63■■□□□ 1.69
CCDC88B-206ENST00000473405 DCAF5Q96JK2 942 aa25.63■■□□□ 1.69
CCDC88B-206ENST00000473405 ERVV-2B6SEH9 535 aa25.62■■□□□ 1.69
CCDC88B-206ENST00000473405 AMOTQ4VCS5 1084 aa25.62■■□□□ 1.69
CCDC88B-206ENST00000473405 HSP90AB1P08238 724 aaKnown RBP25.61■■□□□ 1.69
CCDC88B-206ENST00000473405 SULT6B1Q6IMI4 303 aa25.61■■□□□ 1.69
CCDC88B-206ENST00000473405 SMIM5Q71RC9 77 aa25.61■■□□□ 1.69
CCDC88B-206ENST00000473405 CICQ96RK0 1608 aaPredicted RBP25.59■■□□□ 1.69
CCDC88B-206ENST00000473405 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.59■■□□□ 1.69
CCDC88B-206ENST00000473405 PHF14O94880 888 aa25.59■■□□□ 1.69
CCDC88B-206ENST00000473405 ATP6V1AP38606 617 aa25.59■■□□□ 1.69
CCDC88B-206ENST00000473405 SSFA2P28290 1259 aa25.58■■□□□ 1.69
CCDC88B-206ENST00000473405 MTHFSP49914 203 aa25.58■■□□□ 1.69
CCDC88B-206ENST00000473405 SLC4A9Q96Q91 983 aa25.58■■□□□ 1.69
CCDC88B-206ENST00000473405 TJP1Q07157 1748 aa25.57■■□□□ 1.68
CCDC88B-206ENST00000473405 COL3A1P02461 1466 aaPredicted RBP25.56■■□□□ 1.68
CCDC88B-206ENST00000473405 CC2D1BQ5T0F9 858 aaKnown RBP25.56■■□□□ 1.68
CCDC88B-206ENST00000473405 C4AP0C0L4 1744 aa25.56■■□□□ 1.68
CCDC88B-206ENST00000473405 MYH14Q7Z406 1995 aaKnown RBP25.56■■□□□ 1.68
CCDC88B-206ENST00000473405 NPC1L1Q9UHC9 1359 aa25.56■■□□□ 1.68
CCDC88B-206ENST00000473405 ADAMTS7Q9UKP4 1686 aa25.55■■□□□ 1.68
CCDC88B-206ENST00000473405 GNPATO15228 680 aa25.55■■□□□ 1.68
CCDC88B-206ENST00000473405 GPR162Q16538 588 aa25.55■■□□□ 1.68
CCDC88B-206ENST00000473405 C1orf141Q5JVX7 400 aa25.54■■□□□ 1.68
CCDC88B-206ENST00000473405 MRC1P22897 1456 aa25.53■■□□□ 1.68
CCDC88B-206ENST00000473405 CABP4P57796 275 aa25.52■■□□□ 1.68
CCDC88B-206ENST00000473405 RBM42Q9BTD8 480 aaKnown RBP25.51■■□□□ 1.67
CCDC88B-206ENST00000473405 PELP1Q8IZL8 1130 aaKnown RBP25.5■■□□□ 1.67
CCDC88B-206ENST00000473405 ZNF784Q8NCA9 323 aaPredicted RBP25.5■■□□□ 1.67
CCDC88B-206ENST00000473405 CD2APQ9Y5K6 639 aa25.5■■□□□ 1.67
CCDC88B-206ENST00000473405 KIF13BQ9NQT8 1826 aa25.49■■□□□ 1.67
CCDC88B-206ENST00000473405 HMOX1P09601 288 aa25.49■■□□□ 1.67
CCDC88B-206ENST00000473405 YBX3P16989 372 aaKnown RBP eCLIP25.49■■□□□ 1.67
CCDC88B-206ENST00000473405 NFATC2IPQ8NCF5 419 aa25.49■■□□□ 1.67
CCDC88B-206ENST00000473405 CNTNAP4Q9C0A0 1308 aa25.48■■□□□ 1.67
CCDC88B-206ENST00000473405 KIAA1551Q9HCM1 1747 aa25.47■■□□□ 1.67
CCDC88B-206ENST00000473405 DIAPH1O60610 1272 aaKnown RBP25.47■■□□□ 1.67
CCDC88B-206ENST00000473405 AKAP4Q5JQC9 854 aa25.47■■□□□ 1.67
CCDC88B-206ENST00000473405 RC3H1Q5TC82 1133 aaKnown RBP25.46■■□□□ 1.67
CCDC88B-206ENST00000473405 PTCD1O75127 700 aaKnown RBP25.45■■□□□ 1.66
CCDC88B-206ENST00000473405 RTCBQ9Y3I0 505 aaKnown RBP25.45■■□□□ 1.66
CCDC88B-206ENST00000473405 UBR2Q8IWV8 1755 aa25.44■■□□□ 1.66
CCDC88B-206ENST00000473405 LGR6Q9HBX8 967 aa25.43■■□□□ 1.66
CCDC88B-206ENST00000473405 KCPQ6ZWJ8 1503 aa25.42■■□□□ 1.66
CCDC88B-206ENST00000473405 ADRA2BP18089 450 aa25.42■■□□□ 1.66
CCDC88B-206ENST00000473405 CNGB1Q14028 1251 aaPredicted RBP25.42■■□□□ 1.66
CCDC88B-206ENST00000473405 SLC52A2Q9HAB3 445 aa25.42■■□□□ 1.66
CCDC88B-206ENST00000473405 SIPA1L3O60292 1781 aaPredicted RBP25.41■■□□□ 1.66
CCDC88B-206ENST00000473405 RPS6KA4O75676 772 aa25.41■■□□□ 1.66
CCDC88B-206ENST00000473405 MTHFSDQ2M296 383 aaKnown RBP25.41■■□□□ 1.66
CCDC88B-206ENST00000473405 TRAPPC3LQ5T215 181 aa25.41■■□□□ 1.66
CCDC88B-206ENST00000473405 MMP10P09238 476 aa25.4■■□□□ 1.66
CCDC88B-206ENST00000473405 ARHGEF1Q92888 912 aaKnown RBP25.4■■□□□ 1.66
CCDC88B-206ENST00000473405 N4BP2Q86UW6 1770 aaPredicted RBP25.39■■□□□ 1.66
CCDC88B-206ENST00000473405 RNMTO43148 476 aaKnown RBP25.39■■□□□ 1.66
CCDC88B-206ENST00000473405 CRKLP46109 303 aaKnown RBP25.39■■□□□ 1.66
CCDC88B-206ENST00000473405 GRIN3BO60391 1043 aa25.38■■□□□ 1.65
CCDC88B-206ENST00000473405 GYS1P13807 737 aa25.37■■□□□ 1.65
CCDC88B-206ENST00000473405 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
CCDC88B-206ENST00000473405 PXDNLA1KZ92 1463 aa25.36■■□□□ 1.65
CCDC88B-206ENST00000473405 BRCA1P38398 1863 aaKnown RBP25.36■■□□□ 1.65
CCDC88B-206ENST00000473405 NLGN1Q8N2Q7 840 aa25.35■■□□□ 1.65
CCDC88B-206ENST00000473405 U2SURPO15042 1029 aaKnown RBP25.34■■□□□ 1.65
CCDC88B-206ENST00000473405 RFC4P35249 363 aa25.34■■□□□ 1.65
CCDC88B-206ENST00000473405 SLC39A6Q13433 755 aa25.34■■□□□ 1.65
CCDC88B-206ENST00000473405 INTS5Q6P9B9 1019 aaKnown RBP25.33■■□□□ 1.65
CCDC88B-206ENST00000473405 DNAJC10Q8IXB1 793 aa25.32■■□□□ 1.64
CCDC88B-206ENST00000473405 USP42Q9H9J4 1324 aaKnown RBP25.32■■□□□ 1.64
CCDC88B-206ENST00000473405 WWC3Q9ULE0 1092 aa25.31■■□□□ 1.64
CCDC88B-206ENST00000473405 CEP350Q5VT06 3117 aa25.31■■□□□ 1.64
CCDC88B-206ENST00000473405 SRP68Q9UHB9 627 aaKnown RBP25.3■■□□□ 1.64
CCDC88B-206ENST00000473405 CCDC87Q9NVE4 849 aa25.29■■□□□ 1.64
CCDC88B-206ENST00000473405 CYP19A1P11511 503 aaPredicted RBP25.28■■□□□ 1.64
CCDC88B-206ENST00000473405 SOS1Q07889 1333 aaPredicted RBP25.28■■□□□ 1.64
CCDC88B-206ENST00000473405 ADCY9O60503 1353 aa25.28■■□□□ 1.64
CCDC88B-206ENST00000473405 PPP2R1AP30153 589 aa25.27■■□□□ 1.64
CCDC88B-206ENST00000473405 GAS2L2Q8NHY3 880 aa25.27■■□□□ 1.64
CCDC88B-206ENST00000473405 RSPH6AQ9H0K4 717 aa25.27■■□□□ 1.64
CCDC88B-206ENST00000473405 FKBP8Q14318 412 aa25.26■■□□□ 1.63
CCDC88B-206ENST00000473405 IL17REQ8NFR9 667 aa25.26■■□□□ 1.63
CCDC88B-206ENST00000473405 CFAP53Q96M91 514 aa25.26■■□□□ 1.63
CCDC88B-206ENST00000473405 GNAT3A8MTJ3 354 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 VSIG10Q8N0Z9 540 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 PHACTR3Q96KR7 559 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 PARP3Q9Y6F1 533 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 CEMIPQ8WUJ3 1361 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 ATP10DQ9P241 1426 aa25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 AFDNP55196 1824 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-206ENST00000473405 ARFGEF1Q9Y6D6 1849 aa25.24■■□□□ 1.63
CCDC88B-206ENST00000473405 COL15A1P39059 1388 aa25.24■■□□□ 1.63
CCDC88B-206ENST00000473405 PRKAR2BP31323 418 aa25.24■■□□□ 1.63
CCDC88B-206ENST00000473405 TGFB2P61812 414 aa25.24■■□□□ 1.63
CCDC88B-206ENST00000473405 DDR1Q08345 913 aa25.24■■□□□ 1.63
CCDC88B-206ENST00000473405 NRXN2Q9P2S2 1712 aa25.23■■□□□ 1.63
CCDC88B-206ENST00000473405 ZBTB1Q9Y2K1 713 aa25.23■■□□□ 1.63
CCDC88B-206ENST00000473405 A0A0G2JLW4 131 aa25.22■■□□□ 1.63
CCDC88B-206ENST00000473405 SCN7AQ01118 1682 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms