RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 AK7Q96M32 723 aa15.46■□□□□ 0.07
CPNE1-222ENST00000473373 UTRNP46939 3433 aa15.46■□□□□ 0.06
CPNE1-222ENST00000473373 C4BP0C0L5 1744 aa15.46■□□□□ 0.06
CPNE1-222ENST00000473373 POLD1P28340 1107 aa15.45■□□□□ 0.06
CPNE1-222ENST00000473373 RBM42Q9BTD8 480 aaKnown RBP15.45■□□□□ 0.06
CPNE1-222ENST00000473373 MAP3K5Q99683 1374 aa15.45■□□□□ 0.06
CPNE1-222ENST00000473373 PNPLA7Q6ZV29 1317 aa15.44■□□□□ 0.06
CPNE1-222ENST00000473373 ERVV-2B6SEH9 535 aa15.44■□□□□ 0.06
CPNE1-222ENST00000473373 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
CPNE1-222ENST00000473373 SLC16A10Q8TF71 515 aa15.44■□□□□ 0.06
CPNE1-222ENST00000473373 KDRP35968 1356 aa15.44■□□□□ 0.06
CPNE1-222ENST00000473373 LOC102724428A0A0B4J2F2 783 aa15.43■□□□□ 0.06
CPNE1-222ENST00000473373 SIK1P57059 783 aa15.43■□□□□ 0.06
CPNE1-222ENST00000473373 AKAP4Q5JQC9 854 aa15.43■□□□□ 0.06
CPNE1-222ENST00000473373 ASAP1Q9ULH1 1129 aa15.43■□□□□ 0.06
CPNE1-222ENST00000473373 CHD4Q14839 1912 aa15.43■□□□□ 0.06
CPNE1-222ENST00000473373 UBR3Q6ZT12 1888 aa15.42■□□□□ 0.06
CPNE1-222ENST00000473373 PHF14O94880 888 aa15.42■□□□□ 0.06
CPNE1-222ENST00000473373 NEFMP07197 916 aa15.42■□□□□ 0.06
CPNE1-222ENST00000473373 PPP2R1AP30153 589 aa15.42■□□□□ 0.06
CPNE1-222ENST00000473373 NLGN2Q8NFZ4 835 aa15.42■□□□□ 0.06
CPNE1-222ENST00000473373 GIGYF1O75420 1035 aaPredicted RBP15.41■□□□□ 0.06
CPNE1-222ENST00000473373 U2AF1L5P0DN76 240 aaPredicted RBP15.41■□□□□ 0.06
CPNE1-222ENST00000473373 ZEB1P37275 1124 aaPredicted RBP15.41■□□□□ 0.06
CPNE1-222ENST00000473373 U2AF1Q01081 240 aaKnown RBP eCLIP15.41■□□□□ 0.064e-24■■□□□ 12.7
CPNE1-222ENST00000473373 DDX10Q13206 875 aaKnown RBP15.41■□□□□ 0.06
CPNE1-222ENST00000473373 KDM6AO15550 1401 aaPredicted RBP15.41■□□□□ 0.06
CPNE1-222ENST00000473373 COL3A1P02461 1466 aaPredicted RBP15.4■□□□□ 0.06
CPNE1-222ENST00000473373 NFATC2IPQ8NCF5 419 aa15.4■□□□□ 0.06
CPNE1-222ENST00000473373 FLAD1Q8NFF5 587 aa15.4■□□□□ 0.06
CPNE1-222ENST00000473373 ATG3Q9NT62 314 aa15.4■□□□□ 0.06
CPNE1-222ENST00000473373 GAS2L2Q8NHY3 880 aa15.39■□□□□ 0.05
CPNE1-222ENST00000473373 GNPATO15228 680 aa15.38■□□□□ 0.05
CPNE1-222ENST00000473373 PTCD1O75127 700 aaKnown RBP15.38■□□□□ 0.05
CPNE1-222ENST00000473373 MTHFSDQ2M296 383 aaKnown RBP15.38■□□□□ 0.05
CPNE1-222ENST00000473373 MSL1Q68DK7 614 aa15.38■□□□□ 0.05
CPNE1-222ENST00000473373 COL5A3P25940 1745 aaPredicted RBP15.37■□□□□ 0.05
CPNE1-222ENST00000473373 YBX3P16989 372 aaKnown RBP eCLIP15.37■□□□□ 0.05
CPNE1-222ENST00000473373 PRKAR2BP31323 418 aa15.37■□□□□ 0.05
CPNE1-222ENST00000473373 COL23A1Q86Y22 540 aaPredicted RBP15.37■□□□□ 0.05
CPNE1-222ENST00000473373 ZNF831Q5JPB2 1677 aa15.36■□□□□ 0.05
CPNE1-222ENST00000473373 RNMTO43148 476 aaKnown RBP15.36■□□□□ 0.05
CPNE1-222ENST00000473373 TEFQ10587 303 aa15.36■□□□□ 0.05
CPNE1-222ENST00000473373 LINC00116Q8NCU8 138 aa15.36■□□□□ 0.05
CPNE1-222ENST00000473373 DLG5Q8TDM6 1919 aa15.35■□□□□ 0.05
CPNE1-222ENST00000473373 GNAT3A8MTJ3 354 aa15.35■□□□□ 0.05
CPNE1-222ENST00000473373 TTC5Q8N0Z6 440 aa15.35■□□□□ 0.05
CPNE1-222ENST00000473373 RTF1Q92541 710 aaKnown RBP15.35■□□□□ 0.05
CPNE1-222ENST00000473373 SLC52A2Q9HAB3 445 aa15.35■□□□□ 0.05
CPNE1-222ENST00000473373 LGR6Q9HBX8 967 aa15.35■□□□□ 0.05
CPNE1-222ENST00000473373 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.34■□□□□ 0.05
CPNE1-222ENST00000473373 ITPK1Q13572 414 aa15.34■□□□□ 0.05
CPNE1-222ENST00000473373 RTCBQ9Y3I0 505 aaKnown RBP15.34■□□□□ 0.05
CPNE1-222ENST00000473373 GRIN3BO60391 1043 aa15.33■□□□□ 0.04
CPNE1-222ENST00000473373 SSFA2P28290 1259 aa15.33■□□□□ 0.04
CPNE1-222ENST00000473373 TJP1Q07157 1748 aa15.33■□□□□ 0.04
CPNE1-222ENST00000473373 COL24A1Q17RW2 1714 aa15.33■□□□□ 0.04
CPNE1-222ENST00000473373 MYH14Q7Z406 1995 aaKnown RBP15.33■□□□□ 0.04
CPNE1-222ENST00000473373 RALBP1Q15311 655 aa15.32■□□□□ 0.04
CPNE1-222ENST00000473373 SMIM5Q71RC9 77 aa15.32■□□□□ 0.04
CPNE1-222ENST00000473373 RSPH6AQ9H0K4 717 aa15.32■□□□□ 0.04
CPNE1-222ENST00000473373 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
CPNE1-222ENST00000473373 FCHSD2O94868 740 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 SLC39A6Q13433 755 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 TRAPPC3LQ5T215 181 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 PNNQ9H307 717 aaKnown RBP15.31■□□□□ 0.04
CPNE1-222ENST00000473373 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 MRC1P22897 1456 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 ADAMTS7Q9UKP4 1686 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 C4AP0C0L4 1744 aa15.31■□□□□ 0.04
CPNE1-222ENST00000473373 RFC4P35249 363 aa15.3■□□□□ 0.04
CPNE1-222ENST00000473373 UBR2Q8IWV8 1755 aa15.29■□□□□ 0.04
CPNE1-222ENST00000473373 PHACTR3Q96KR7 559 aa15.29■□□□□ 0.04
CPNE1-222ENST00000473373 CNTNAP4Q9C0A0 1308 aa15.28■□□□□ 0.04
CPNE1-222ENST00000473373 CRKLP46109 303 aaKnown RBP15.28■□□□□ 0.04
CPNE1-222ENST00000473373 IFFO2Q5TF58 517 aa15.28■□□□□ 0.04
CPNE1-222ENST00000473373 ATP10DQ9P241 1426 aa15.27■□□□□ 0.04
CPNE1-222ENST00000473373 GOLGB1Q14789 3259 aaKnown RBP15.27■□□□□ 0.04
CPNE1-222ENST00000473373 MYBBP1AQ9BQG0 1328 aaKnown RBP15.27■□□□□ 0.04
CPNE1-222ENST00000473373 RC3H1Q5TC82 1133 aaKnown RBP15.27■□□□□ 0.04
CPNE1-222ENST00000473373 NPM2Q86SE8 214 aaKnown RBP15.27■□□□□ 0.04
CPNE1-222ENST00000473373 SLC4A9Q96Q91 983 aa15.27■□□□□ 0.04
CPNE1-222ENST00000473373 WWC3Q9ULE0 1092 aa15.27■□□□□ 0.04
CPNE1-222ENST00000473373 CICQ96RK0 1608 aaPredicted RBP15.26■□□□□ 0.03
CPNE1-222ENST00000473373 BTBD11A6QL63 1104 aa15.26■□□□□ 0.03
CPNE1-222ENST00000473373 RPS6KA4O75676 772 aa15.26■□□□□ 0.03
CPNE1-222ENST00000473373 AMIGO3Q86WK7 504 aa15.26■□□□□ 0.03
CPNE1-222ENST00000473373 DNAJC10Q8IXB1 793 aa15.26■□□□□ 0.03
CPNE1-222ENST00000473373 ZNF526Q8TF50 670 aaPredicted RBP15.26■□□□□ 0.03
CPNE1-222ENST00000473373 CD2APQ9Y5K6 639 aa15.26■□□□□ 0.03
CPNE1-222ENST00000473373 WDR43Q15061 677 aaKnown RBP eCLIP15.25■□□□□ 0.03
CPNE1-222ENST00000473373 MCM10Q7L590 875 aa15.25■□□□□ 0.03
CPNE1-222ENST00000473373 IL17REQ8NFR9 667 aa15.25■□□□□ 0.03
CPNE1-222ENST00000473373 GPBP1L1Q9HC44 474 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-222ENST00000473373 CCDC87Q9NVE4 849 aa15.25■□□□□ 0.03
CPNE1-222ENST00000473373 ZNF330Q9Y3S2 320 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-222ENST00000473373 KCPQ6ZWJ8 1503 aa15.24■□□□□ 0.03
CPNE1-222ENST00000473373 ZPR1O75312 459 aa15.24■□□□□ 0.03
CPNE1-222ENST00000473373 STARD3NLO95772 234 aa15.24■□□□□ 0.03
CPNE1-222ENST00000473373 ARHGEF1Q92888 912 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms