RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 PLEKHG2Q9H7P9 1386 aa22.7■■□□□ 1.22
USP40-212ENST00000473191 HMOX1P09601 288 aa22.69■■□□□ 1.22
USP40-212ENST00000473191 ATP6V1AP38606 617 aa22.69■■□□□ 1.22
USP40-212ENST00000473191 DCAF5Q96JK2 942 aa22.69■■□□□ 1.22
USP40-212ENST00000473191 AK7Q96M32 723 aa22.69■■□□□ 1.22
USP40-212ENST00000473191 DCAF8L1A6NGE4 600 aa22.68■■□□□ 1.22
USP40-212ENST00000473191 AMOTQ4VCS5 1084 aa22.68■■□□□ 1.22
USP40-212ENST00000473191 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.67■■□□□ 1.22
USP40-212ENST00000473191 ERVV-2B6SEH9 535 aa22.67■■□□□ 1.22
USP40-212ENST00000473191 HSP90AB1P08238 724 aaKnown RBP22.65■■□□□ 1.22
USP40-212ENST00000473191 CABP4P57796 275 aa22.65■■□□□ 1.22
USP40-212ENST00000473191 RBM42Q9BTD8 480 aaKnown RBP22.65■■□□□ 1.22
USP40-212ENST00000473191 COL3A1P02461 1466 aaPredicted RBP22.65■■□□□ 1.22
USP40-212ENST00000473191 GNPATO15228 680 aa22.64■■□□□ 1.21
USP40-212ENST00000473191 C1orf141Q5JVX7 400 aa22.63■■□□□ 1.21
USP40-212ENST00000473191 NFATC2IPQ8NCF5 419 aa22.63■■□□□ 1.21
USP40-212ENST00000473191 LGR6Q9HBX8 967 aa22.63■■□□□ 1.21
USP40-212ENST00000473191 GOLGB1Q14789 3259 aaKnown RBP22.63■■□□□ 1.21
USP40-212ENST00000473191 FLAD1Q8NFF5 587 aa22.62■■□□□ 1.21
USP40-212ENST00000473191 SCN11AQ9UI33 1791 aa22.62■■□□□ 1.21
USP40-212ENST00000473191 COL5A3P25940 1745 aaPredicted RBP22.62■■□□□ 1.21
USP40-212ENST00000473191 DIAPH1O60610 1272 aaKnown RBP22.61■■□□□ 1.21
USP40-212ENST00000473191 SSFA2P28290 1259 aa22.61■■□□□ 1.21
USP40-212ENST00000473191 NPC1L1Q9UHC9 1359 aa22.61■■□□□ 1.21
USP40-212ENST00000473191 PTCD1O75127 700 aaKnown RBP22.6■■□□□ 1.21
USP40-212ENST00000473191 GPR162Q16538 588 aa22.6■■□□□ 1.21
USP40-212ENST00000473191 MTHFSDQ2M296 383 aaKnown RBP22.6■■□□□ 1.21
USP40-212ENST00000473191 PELP1Q8IZL8 1130 aaKnown RBP22.6■■□□□ 1.21
USP40-212ENST00000473191 ZNF831Q5JPB2 1677 aa22.59■■□□□ 1.21
USP40-212ENST00000473191 YBX3P16989 372 aaKnown RBP eCLIP22.58■■□□□ 1.21
USP40-212ENST00000473191 AKAP4Q5JQC9 854 aa22.58■■□□□ 1.21
USP40-212ENST00000473191 VIRMAQ69YN4 1812 aaKnown RBP22.58■■□□□ 1.21
USP40-212ENST00000473191 MYH14Q7Z406 1995 aaKnown RBP22.58■■□□□ 1.2
USP40-212ENST00000473191 TJP1Q07157 1748 aa22.57■■□□□ 1.2
USP40-212ENST00000473191 RNMTO43148 476 aaKnown RBP22.55■■□□□ 1.2
USP40-212ENST00000473191 HMGB2P26583 209 aaKnown RBP22.55■■□□□ 1.2
USP40-212ENST00000473191 U2SURPO15042 1029 aaKnown RBP22.54■■□□□ 1.2
USP40-212ENST00000473191 SLC39A6Q13433 755 aa22.54■■□□□ 1.2
USP40-212ENST00000473191 ARHGEF1Q92888 912 aaKnown RBP22.54■■□□□ 1.2
USP40-212ENST00000473191 SLC52A2Q9HAB3 445 aa22.54■■□□□ 1.2
USP40-212ENST00000473191 WWC3Q9ULE0 1092 aa22.54■■□□□ 1.2
USP40-212ENST00000473191 CHD4Q14839 1912 aa22.54■■□□□ 1.2
USP40-212ENST00000473191 ADAMTS7Q9UKP4 1686 aa22.53■■□□□ 1.2
USP40-212ENST00000473191 RTCBQ9Y3I0 505 aaKnown RBP22.53■■□□□ 1.2
USP40-212ENST00000473191 CNTNAP4Q9C0A0 1308 aa22.53■■□□□ 1.2
USP40-212ENST00000473191 MRC1P22897 1456 aa22.53■■□□□ 1.2
USP40-212ENST00000473191 C4AP0C0L4 1744 aa22.52■■□□□ 1.2
USP40-212ENST00000473191 TRAPPC3LQ5T215 181 aa22.52■■□□□ 1.2
USP40-212ENST00000473191 ZNF784Q8NCA9 323 aaPredicted RBP22.52■■□□□ 1.2
USP40-212ENST00000473191 RC3H1Q5TC82 1133 aaKnown RBP22.51■■□□□ 1.19
USP40-212ENST00000473191 CD2APQ9Y5K6 639 aa22.51■■□□□ 1.19
USP40-212ENST00000473191 RPS6KA4O75676 772 aa22.5■■□□□ 1.19
USP40-212ENST00000473191 CRKLP46109 303 aaKnown RBP22.5■■□□□ 1.19
USP40-212ENST00000473191 KCPQ6ZWJ8 1503 aa22.49■■□□□ 1.19
USP40-212ENST00000473191 MMP10P09238 476 aa22.49■■□□□ 1.19
USP40-212ENST00000473191 DNAJC10Q8IXB1 793 aa22.49■■□□□ 1.19
USP40-212ENST00000473191 CICQ96RK0 1608 aaPredicted RBP22.49■■□□□ 1.19
USP40-212ENST00000473191 PPP2R1AP30153 589 aa22.48■■□□□ 1.19
USP40-212ENST00000473191 GYS1P13807 737 aa22.47■■□□□ 1.19
USP40-212ENST00000473191 INTS5Q6P9B9 1019 aaKnown RBP22.47■■□□□ 1.19
USP40-212ENST00000473191 PHACTR3Q96KR7 559 aa22.47■■□□□ 1.19
USP40-212ENST00000473191 SRP68Q9UHB9 627 aaKnown RBP22.47■■□□□ 1.19
USP40-212ENST00000473191 IL17REQ8NFR9 667 aa22.46■■□□□ 1.19
USP40-212ENST00000473191 RSPH6AQ9H0K4 717 aa22.45■■□□□ 1.18
USP40-212ENST00000473191 KIAA1551Q9HCM1 1747 aa22.45■■□□□ 1.18
USP40-212ENST00000473191 ADRA2BP18089 450 aa22.44■■□□□ 1.18
USP40-212ENST00000473191 RFC4P35249 363 aa22.44■■□□□ 1.18
USP40-212ENST00000473191 PRKAR2BP31323 418 aa22.43■■□□□ 1.18
USP40-212ENST00000473191 UBR2Q8IWV8 1755 aa22.43■■□□□ 1.18
USP40-212ENST00000473191 CYP19A1P11511 503 aaPredicted RBP22.42■■□□□ 1.18
USP40-212ENST00000473191 KIF13BQ9NQT8 1826 aa22.41■■□□□ 1.18
USP40-212ENST00000473191 SIPA1L3O60292 1781 aaPredicted RBP22.41■■□□□ 1.18
USP40-212ENST00000473191 N4BP2Q86UW6 1770 aaPredicted RBP22.41■■□□□ 1.18
USP40-212ENST00000473191 FKBP8Q14318 412 aa22.41■■□□□ 1.18
USP40-212ENST00000473191 NLGN1Q8N2Q7 840 aa22.41■■□□□ 1.18
USP40-212ENST00000473191 CCDC87Q9NVE4 849 aa22.4■■□□□ 1.18
USP40-212ENST00000473191 ZBTB1Q9Y2K1 713 aa22.4■■□□□ 1.18
USP40-212ENST00000473191 PXDNLA1KZ92 1463 aa22.4■■□□□ 1.18
USP40-212ENST00000473191 USP42Q9H9J4 1324 aaKnown RBP22.39■■□□□ 1.18
USP40-212ENST00000473191 GNAT3A8MTJ3 354 aa22.39■■□□□ 1.17
USP40-212ENST00000473191 GRIN3BO60391 1043 aa22.39■■□□□ 1.17
USP40-212ENST00000473191 GAS2L2Q8NHY3 880 aa22.39■■□□□ 1.17
USP40-212ENST00000473191 CFAP53Q96M91 514 aa22.39■■□□□ 1.17
USP40-212ENST00000473191 C10orf71Q711Q0 1435 aa22.39■■□□□ 1.17
USP40-212ENST00000473191 SOS1Q07889 1333 aaPredicted RBP22.38■■□□□ 1.17
USP40-212ENST00000473191 DDR1Q08345 913 aa22.38■■□□□ 1.17
USP40-212ENST00000473191 A0A0G2JLW4 131 aa22.37■■□□□ 1.17
USP40-212ENST00000473191 KCNQ3O43525 872 aa22.37■■□□□ 1.17
USP40-212ENST00000473191 U2AF1L5P0DN76 240 aaPredicted RBP22.37■■□□□ 1.17
USP40-212ENST00000473191 U2AF1Q01081 240 aaKnown RBP eCLIP22.37■■□□□ 1.17
USP40-212ENST00000473191 USPL1Q5W0Q7 1092 aa22.36■■□□□ 1.17
USP40-212ENST00000473191 ZNF496Q96IT1 587 aaPredicted RBP22.36■■□□□ 1.17
USP40-212ENST00000473191 PARP3Q9Y6F1 533 aa22.35■■□□□ 1.17
USP40-212ENST00000473191 CEMIPQ8WUJ3 1361 aa22.35■■□□□ 1.17
USP40-212ENST00000473191 TEFQ10587 303 aa22.34■■□□□ 1.17
USP40-212ENST00000473191 ZNF790Q6PG37 636 aa22.34■■□□□ 1.17
USP40-212ENST00000473191 DPEP1P16444 411 aa22.33■■□□□ 1.17
USP40-212ENST00000473191 CANXP27824 592 aaKnown RBP22.33■■□□□ 1.17
USP40-212ENST00000473191 DCTN1Q14203 1278 aa22.33■■□□□ 1.17
USP40-212ENST00000473191 VSIG10Q8N0Z9 540 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms