RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 FAM98CQ17RN3 349 aaKnown RBP24.79■■□□□ 1.56
SMARCD3-209ENST00000472988 KRT24Q2M2I5 525 aa24.79■■□□□ 1.56
SMARCD3-209ENST00000472988 SLC52A2Q9HAB3 445 aa24.79■■□□□ 1.56
SMARCD3-209ENST00000472988 RARSP54136 660 aaKnown RBP24.78■■□□□ 1.56
SMARCD3-209ENST00000472988 DDB1Q16531 1140 aa24.78■■□□□ 1.56
SMARCD3-209ENST00000472988 UBR2Q8IWV8 1755 aa24.77■■□□□ 1.56
SMARCD3-209ENST00000472988 RRP1P56182 461 aaKnown RBP24.77■■□□□ 1.56
SMARCD3-209ENST00000472988 BTBD11A6QL63 1104 aa24.76■■□□□ 1.55
SMARCD3-209ENST00000472988 BCAR3O75815 825 aa24.76■■□□□ 1.55
SMARCD3-209ENST00000472988 TWISTNBQ3B726 338 aaPredicted RBP24.76■■□□□ 1.55
SMARCD3-209ENST00000472988 TRPC5Q9UL62 973 aaPredicted RBP24.76■■□□□ 1.55
SMARCD3-209ENST00000472988 ELL2O00472 640 aaPredicted RBP24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 VAMP4O75379 141 aa24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 GJD4Q96KN9 370 aaPredicted RBP24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 C5P01031 1676 aa24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 NFATC2IPQ8NCF5 419 aa24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 GTF3C3Q9Y5Q9 886 aa24.75■■□□□ 1.55
SMARCD3-209ENST00000472988 KCNQ3O43525 872 aa24.74■■□□□ 1.55
SMARCD3-209ENST00000472988 KAT6BQ8WYB5 2073 aa24.74■■□□□ 1.55
SMARCD3-209ENST00000472988 BCL2L13Q9BXK5 485 aa24.73■■□□□ 1.55
SMARCD3-209ENST00000472988 ERVV-2B6SEH9 535 aa24.72■■□□□ 1.55
SMARCD3-209ENST00000472988 CABP4P57796 275 aa24.72■■□□□ 1.55
SMARCD3-209ENST00000472988 IRX6P78412 446 aaPredicted RBP24.72■■□□□ 1.55
SMARCD3-209ENST00000472988 NEFLP07196 543 aa24.71■■□□□ 1.55
SMARCD3-209ENST00000472988 MARCH10Q8NA82 808 aaPredicted RBP24.71■■□□□ 1.55
SMARCD3-209ENST00000472988 SSH1Q8WYL5 1049 aa24.71■■□□□ 1.55
SMARCD3-209ENST00000472988 CACNA1FO60840 1977 aa24.7■■□□□ 1.55
SMARCD3-209ENST00000472988 PLIN1O60240 522 aa24.7■■□□□ 1.54
SMARCD3-209ENST00000472988 EIF4A1P60842 406 aaKnown RBP24.7■■□□□ 1.54
SMARCD3-209ENST00000472988 ZNF428Q96B54 188 aa24.7■■□□□ 1.54
SMARCD3-209ENST00000472988 BRWD3Q6RI45 1802 aa24.7■■□□□ 1.54
SMARCD3-209ENST00000472988 LAMB4A4D0S4 1761 aa24.69■■□□□ 1.54
SMARCD3-209ENST00000472988 SLC39A6Q13433 755 aa24.69■■□□□ 1.54
SMARCD3-209ENST00000472988 ALDH1L2Q3SY69 923 aa24.69■■□□□ 1.54
SMARCD3-209ENST00000472988 QTRT2Q9H974 415 aaKnown RBP24.69■■□□□ 1.54
SMARCD3-209ENST00000472988 SMC4Q9NTJ3 1288 aa24.69■■□□□ 1.54
SMARCD3-209ENST00000472988 A0A0G2JS52 829 aa24.67■■□□□ 1.54
SMARCD3-209ENST00000472988 MYT1Q01538 1121 aa24.67■■□□□ 1.54
SMARCD3-209ENST00000472988 ZNF790Q6PG37 636 aa24.67■■□□□ 1.54
SMARCD3-209ENST00000472988 HEG1Q9ULI3 1381 aa24.67■■□□□ 1.54
SMARCD3-209ENST00000472988 KCPQ6ZWJ8 1503 aa24.67■■□□□ 1.54
SMARCD3-209ENST00000472988 FKBP8Q14318 412 aa24.66■■□□□ 1.54
SMARCD3-209ENST00000472988 SOS1Q07889 1333 aaPredicted RBP24.65■■□□□ 1.54
SMARCD3-209ENST00000472988 ONECUT3O60422 494 aaPredicted RBP24.65■■□□□ 1.54
SMARCD3-209ENST00000472988 SBF2Q86WG5 1849 aa24.64■■□□□ 1.54
SMARCD3-209ENST00000472988 BCL9O00512 1426 aa24.64■■□□□ 1.54
SMARCD3-209ENST00000472988 TCERG1O14776 1098 aaKnown RBP24.64■■□□□ 1.53
SMARCD3-209ENST00000472988 TMOD3Q9NYL9 352 aa24.64■■□□□ 1.53
SMARCD3-209ENST00000472988 ZNF772Q68DY9 489 aaPredicted RBP24.63■■□□□ 1.53
SMARCD3-209ENST00000472988 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.63■■□□□ 1.53
SMARCD3-209ENST00000472988 MRPL50Q8N5N7 158 aaKnown RBP24.62■■□□□ 1.53
SMARCD3-209ENST00000472988 FRAT1Q92837 279 aaPredicted RBP24.62■■□□□ 1.53
SMARCD3-209ENST00000472988 NHSQ6T4R5 1651 aa24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 HOXB7P09629 217 aa24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 BRPF1P55201 1214 aaPredicted RBP24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 C20orf194Q5TEA3 1177 aa24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 TTC5Q8N0Z6 440 aa24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 PIGBQ92521 554 aa24.61■■□□□ 1.53
SMARCD3-209ENST00000472988 GIGYF1O75420 1035 aaPredicted RBP24.6■■□□□ 1.53
SMARCD3-209ENST00000472988 ZNF496Q96IT1 587 aaPredicted RBP24.6■■□□□ 1.53
SMARCD3-209ENST00000472988 KIF16BQ96L93 1317 aa24.6■■□□□ 1.53
SMARCD3-209ENST00000472988 SEPT12Q8IYM1 358 aa24.59■■□□□ 1.53
SMARCD3-209ENST00000472988 PRAMEF22A3QJZ6 481 aa24.59■■□□□ 1.53
SMARCD3-209ENST00000472988 CANXP27824 592 aaKnown RBP24.59■■□□□ 1.53
SMARCD3-209ENST00000472988 PRIM1P49642 420 aaKnown RBP24.58■■□□□ 1.53
SMARCD3-209ENST00000472988 HDGFL1Q5TGJ6 251 aa24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 NECTIN2Q92692 538 aa24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 SYTL4Q96C24 671 aaPredicted RBP24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 ACSBG1Q96GR2 724 aa24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 NOB1Q9ULX3 412 aaKnown RBP24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 TNNQ9UQP3 1299 aa24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 BTAF1O14981 1849 aa24.57■■□□□ 1.52
SMARCD3-209ENST00000472988 ZKSCAN2Q63HK3 967 aa24.56■■□□□ 1.52
SMARCD3-209ENST00000472988 FMNL2Q96PY5 1086 aa24.56■■□□□ 1.52
SMARCD3-209ENST00000472988 CCDC30Q5VVM6 783 aa24.56■■□□□ 1.52
SMARCD3-209ENST00000472988 ASAP1Q9ULH1 1129 aa24.56■■□□□ 1.52
SMARCD3-209ENST00000472988 RBM6P78332 1123 aaKnown RBP24.55■■□□□ 1.52
SMARCD3-209ENST00000472988 ATG3Q9NT62 314 aa24.55■■□□□ 1.52
SMARCD3-209ENST00000472988 TJP1Q07157 1748 aa24.55■■□□□ 1.52
SMARCD3-209ENST00000472988 EIF2S2P20042 333 aaKnown RBP24.54■■□□□ 1.52
SMARCD3-209ENST00000472988 RGS17Q9UGC6 210 aaPredicted RBP24.54■■□□□ 1.52
SMARCD3-209ENST00000472988 TRIM27P14373 513 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 SLC4A2P04920 1241 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 PDE3AQ14432 1141 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 FAM182BQ5T319 152 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 ATF7IPQ6VMQ6 1270 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 STK31Q9BXU1 1019 aa24.53■■□□□ 1.52
SMARCD3-209ENST00000472988 SNRPA1P09661 255 aaKnown RBP24.52■■□□□ 1.52
SMARCD3-209ENST00000472988 PANK1Q8TE04 598 aa24.52■■□□□ 1.52
SMARCD3-209ENST00000472988 CRBNQ96SW2 442 aa24.52■■□□□ 1.52
SMARCD3-209ENST00000472988 N4BP2Q86UW6 1770 aaPredicted RBP24.52■■□□□ 1.52
SMARCD3-209ENST00000472988 CICQ96RK0 1608 aaPredicted RBP24.52■■□□□ 1.52
SMARCD3-209ENST00000472988 RGS12O14924 1447 aa24.51■■□□□ 1.51
SMARCD3-209ENST00000472988 PTCD1O75127 700 aaKnown RBP24.51■■□□□ 1.51
SMARCD3-209ENST00000472988 RLBP1P12271 317 aa24.51■■□□□ 1.51
SMARCD3-209ENST00000472988 IPO8O15397 1037 aaKnown RBP24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 KCNQ2O43526 872 aa24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 G2E3Q7L622 706 aa24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 CLUAP1Q96AJ1 413 aa24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 CHPF2Q9P2E5 772 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms