RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LINC00116Q8NCU8 138 aa16.08■□□□□ 0.16
SYNE1-221ENST00000472563 FHDC1Q9C0D6 1143 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-221ENST00000472563 NUDCQ9Y266 331 aa16.07■□□□□ 0.16
SYNE1-221ENST00000472563 SLC4A9Q96Q91 983 aa16.06■□□□□ 0.16
SYNE1-221ENST00000472563 SYT17Q9BSW7 474 aa16.06■□□□□ 0.16
SYNE1-221ENST00000472563 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
SYNE1-221ENST00000472563 LGR6Q9HBX8 967 aa16.06■□□□□ 0.16
SYNE1-221ENST00000472563 MAP3K5Q99683 1374 aa16.05■□□□□ 0.16
SYNE1-221ENST00000472563 RNMTO43148 476 aaKnown RBP16.05■□□□□ 0.16
SYNE1-221ENST00000472563 SSFA2P28290 1259 aa16.05■□□□□ 0.16
SYNE1-221ENST00000472563 SLC52A2Q9HAB3 445 aa16.05■□□□□ 0.16
SYNE1-221ENST00000472563 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.04■□□□□ 0.16
SYNE1-221ENST00000472563 DCAF8L1A6NGE4 600 aa16.04■□□□□ 0.16
SYNE1-221ENST00000472563 AMIGO3Q86WK7 504 aa16.04■□□□□ 0.16
SYNE1-221ENST00000472563 GAS2L2Q8NHY3 880 aa16.04■□□□□ 0.16
SYNE1-221ENST00000472563 RC3H1Q5TC82 1133 aaKnown RBP16.03■□□□□ 0.16
SYNE1-221ENST00000472563 GNPATO15228 680 aa16.02■□□□□ 0.16
SYNE1-221ENST00000472563 PTCD1O75127 700 aaKnown RBP16.02■□□□□ 0.16
SYNE1-221ENST00000472563 PHF14O94880 888 aa16.02■□□□□ 0.16
SYNE1-221ENST00000472563 RSPH6AQ9H0K4 717 aa16.02■□□□□ 0.16
SYNE1-221ENST00000472563 CNTNAP4Q9C0A0 1308 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 FCHSD2O94868 740 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 U2AF1L5P0DN76 240 aaPredicted RBP16.01■□□□□ 0.15
SYNE1-221ENST00000472563 PRKAR2BP31323 418 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 U2AF1Q01081 240 aaKnown RBP eCLIP16.01■□□□□ 0.15
SYNE1-221ENST00000472563 MSL1Q68DK7 614 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 SMIM5Q71RC9 77 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 PHACTR3Q96KR7 559 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 ITGB4P16144 1822 aa16.01■□□□□ 0.15
SYNE1-221ENST00000472563 GNAT3A8MTJ3 354 aa16■□□□□ 0.15
SYNE1-221ENST00000472563 RTCBQ9Y3I0 505 aaKnown RBP16■□□□□ 0.15
SYNE1-221ENST00000472563 C4BP0C0L5 1744 aa15.99■□□□□ 0.15
SYNE1-221ENST00000472563 QSER1Q2KHR3 1735 aa15.99■□□□□ 0.15
SYNE1-221ENST00000472563 RPS6KA4O75676 772 aa15.99■□□□□ 0.15
SYNE1-221ENST00000472563 ADRA2BP18089 450 aa15.99■□□□□ 0.15
SYNE1-221ENST00000472563 IL17REQ8NFR9 667 aa15.99■□□□□ 0.15
SYNE1-221ENST00000472563 TRAPPC3LQ5T215 181 aa15.98■□□□□ 0.15
SYNE1-221ENST00000472563 C5P01031 1676 aa15.98■□□□□ 0.15
SYNE1-221ENST00000472563 MRC1P22897 1456 aa15.97■□□□□ 0.15
SYNE1-221ENST00000472563 DDX10Q13206 875 aaKnown RBP15.97■□□□□ 0.15
SYNE1-221ENST00000472563 SLC39A6Q13433 755 aa15.97■□□□□ 0.15
SYNE1-221ENST00000472563 RALBP1Q15311 655 aa15.97■□□□□ 0.15
SYNE1-221ENST00000472563 CRKLP46109 303 aaKnown RBP15.96■□□□□ 0.15
SYNE1-221ENST00000472563 TEFQ10587 303 aa15.96■□□□□ 0.15
SYNE1-221ENST00000472563 VSIG10Q8N0Z9 540 aa15.96■□□□□ 0.15
SYNE1-221ENST00000472563 KLHL34Q8N239 644 aa15.96■□□□□ 0.15
SYNE1-221ENST00000472563 ARHGEF1Q92888 912 aaKnown RBP15.96■□□□□ 0.15
SYNE1-221ENST00000472563 DNAJC10Q8IXB1 793 aa15.95■□□□□ 0.14
SYNE1-221ENST00000472563 CD2APQ9Y5K6 639 aa15.95■□□□□ 0.14
SYNE1-221ENST00000472563 ZEB1P37275 1124 aaPredicted RBP15.94■□□□□ 0.14
SYNE1-221ENST00000472563 INTS5Q6P9B9 1019 aaKnown RBP15.94■□□□□ 0.14
SYNE1-221ENST00000472563 NLGN1Q8N2Q7 840 aa15.94■□□□□ 0.14
SYNE1-221ENST00000472563 CEMIPQ8WUJ3 1361 aa15.94■□□□□ 0.14
SYNE1-221ENST00000472563 ZNF831Q5JPB2 1677 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 RFC4P35249 363 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 TTC5Q8N0Z6 440 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 NLGN2Q8NFZ4 835 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 CCDC87Q9NVE4 849 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 TUBGCP6Q96RT7 1819 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 COL24A1Q17RW2 1714 aa15.93■□□□□ 0.14
SYNE1-221ENST00000472563 TAF1LQ8IZX4 1826 aa15.92■□□□□ 0.14
SYNE1-221ENST00000472563 HTATSF1O43719 755 aaKnown RBP15.92■□□□□ 0.14
SYNE1-221ENST00000472563 CYP19A1P11511 503 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-221ENST00000472563 ZNF790Q6PG37 636 aa15.92■□□□□ 0.14
SYNE1-221ENST00000472563 RTF1Q92541 710 aaKnown RBP15.92■□□□□ 0.14
SYNE1-221ENST00000472563 ADAMTS7Q9UKP4 1686 aa15.92■□□□□ 0.14
SYNE1-221ENST00000472563 MMP10P09238 476 aa15.91■□□□□ 0.14
SYNE1-221ENST00000472563 GYS1P13807 737 aa15.91■□□□□ 0.14
SYNE1-221ENST00000472563 GPR162Q16538 588 aa15.91■□□□□ 0.14
SYNE1-221ENST00000472563 NEFMP07197 916 aa15.9■□□□□ 0.14
SYNE1-221ENST00000472563 YY1P25490 414 aa15.9■□□□□ 0.14
SYNE1-221ENST00000472563 ZNF496Q96IT1 587 aaPredicted RBP15.9■□□□□ 0.14
SYNE1-221ENST00000472563 KCPQ6ZWJ8 1503 aa15.89■□□□□ 0.13
SYNE1-221ENST00000472563 PLEKHF1Q96S99 279 aa15.89■□□□□ 0.13
SYNE1-221ENST00000472563 TEX13AQ9BXU3 409 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-221ENST00000472563 PNNQ9H307 717 aaKnown RBP15.89■□□□□ 0.13
SYNE1-221ENST00000472563 SCN11AQ9UI33 1791 aa15.89■□□□□ 0.13
SYNE1-221ENST00000472563 SOS1Q07889 1333 aaPredicted RBP15.89■□□□□ 0.13
SYNE1-221ENST00000472563 BTBD11A6QL63 1104 aa15.88■□□□□ 0.13
SYNE1-221ENST00000472563 STARD3NLO95772 234 aa15.88■□□□□ 0.13
SYNE1-221ENST00000472563 MCM10Q7L590 875 aa15.88■□□□□ 0.13
SYNE1-221ENST00000472563 FMNL2Q96PY5 1086 aa15.88■□□□□ 0.13
SYNE1-221ENST00000472563 UBR3Q6ZT12 1888 aa15.88■□□□□ 0.13
SYNE1-221ENST00000472563 MYBBP1AQ9BQG0 1328 aaKnown RBP15.88■□□□□ 0.13
SYNE1-221ENST00000472563 USP42Q9H9J4 1324 aaKnown RBP15.88■□□□□ 0.13
SYNE1-221ENST00000472563 HEG1Q9ULI3 1381 aa15.87■□□□□ 0.13
SYNE1-221ENST00000472563 SRP68Q9UHB9 627 aaKnown RBP15.87■□□□□ 0.13
SYNE1-221ENST00000472563 ZBTB1Q9Y2K1 713 aa15.87■□□□□ 0.13
SYNE1-221ENST00000472563 DCTN1Q14203 1278 aa15.86■□□□□ 0.13
SYNE1-221ENST00000472563 NFE2L2Q16236 605 aa15.86■□□□□ 0.13
SYNE1-221ENST00000472563 CICQ96RK0 1608 aaPredicted RBP15.86■□□□□ 0.13
SYNE1-221ENST00000472563 KCNQ3O43525 872 aa15.85■□□□□ 0.13
SYNE1-221ENST00000472563 GRIN3BO60391 1043 aa15.85■□□□□ 0.13
SYNE1-221ENST00000472563 ZPR1O75312 459 aa15.85■□□□□ 0.13
SYNE1-221ENST00000472563 FKBP8Q14318 412 aa15.85■□□□□ 0.13
SYNE1-221ENST00000472563 PELP1Q8IZL8 1130 aaKnown RBP15.85■□□□□ 0.13
SYNE1-221ENST00000472563 NARFQ9UHQ1 456 aa15.85■□□□□ 0.13
SYNE1-221ENST00000472563 YBX3P16989 372 aaKnown RBP eCLIP15.84■□□□□ 0.13
SYNE1-221ENST00000472563 CANXP27824 592 aaKnown RBP15.84■□□□□ 0.13
SYNE1-221ENST00000472563 EIF5P55010 431 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms