RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-208ENST00000470045 SLC16A10Q8TF71 515 aa19.02■□□□□ 0.64
COMMD3-208ENST00000470045 PPP1R1BQ9UD71 204 aaPredicted RBP19.02■□□□□ 0.64
COMMD3-208ENST00000470045 ATF5Q9Y2D1 282 aaPredicted RBP19.02■□□□□ 0.64
COMMD3-208ENST00000470045 CICQ96RK0 1608 aaPredicted RBP19.01■□□□□ 0.63
COMMD3-208ENST00000470045 COL5A3P25940 1745 aaPredicted RBP19.01■□□□□ 0.63
COMMD3-208ENST00000470045 TFCP2L1Q9NZI6 479 aa19.01■□□□□ 0.63
COMMD3-208ENST00000470045 ASAP1Q9ULH1 1129 aa19.01■□□□□ 0.63
COMMD3-208ENST00000470045 C1orf141Q5JVX7 400 aa19■□□□□ 0.63
COMMD3-208ENST00000470045 MRC1P22897 1456 aa19■□□□□ 0.63
COMMD3-208ENST00000470045 LOC102724428A0A0B4J2F2 783 aa18.99■□□□□ 0.63
COMMD3-208ENST00000470045 HMOX1P09601 288 aa18.99■□□□□ 0.63
COMMD3-208ENST00000470045 SIK1P57059 783 aa18.99■□□□□ 0.63
COMMD3-208ENST00000470045 ATG3Q9NT62 314 aa18.99■□□□□ 0.63
COMMD3-208ENST00000470045 CNGB1Q14028 1251 aaPredicted RBP18.98■□□□□ 0.63
COMMD3-208ENST00000470045 AKAP4Q5JQC9 854 aa18.97■□□□□ 0.63
COMMD3-208ENST00000470045 MAP3K5Q99683 1374 aa18.96■□□□□ 0.63
COMMD3-208ENST00000470045 PPP2R1AP30153 589 aa18.96■□□□□ 0.63
COMMD3-208ENST00000470045 COL23A1Q86Y22 540 aaPredicted RBP18.96■□□□□ 0.63
COMMD3-208ENST00000470045 TJP1Q07157 1748 aa18.95■□□□□ 0.62
COMMD3-208ENST00000470045 ITPK1Q13572 414 aa18.95■□□□□ 0.62
COMMD3-208ENST00000470045 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
COMMD3-208ENST00000470045 CABP4P57796 275 aa18.94■□□□□ 0.62
COMMD3-208ENST00000470045 FLAD1Q8NFF5 587 aa18.94■□□□□ 0.62
COMMD3-208ENST00000470045 MTHFSDQ2M296 383 aaKnown RBP18.93■□□□□ 0.62
COMMD3-208ENST00000470045 AMIGO3Q86WK7 504 aa18.93■□□□□ 0.62
COMMD3-208ENST00000470045 CFAP53Q96M91 514 aa18.93■□□□□ 0.62
COMMD3-208ENST00000470045 SLC4A9Q96Q91 983 aa18.93■□□□□ 0.62
COMMD3-208ENST00000470045 ARXQ96QS3 562 aa18.93■□□□□ 0.62
COMMD3-208ENST00000470045 SIPA1L3O60292 1781 aaPredicted RBP18.93■□□□□ 0.62
COMMD3-208ENST00000470045 UBR2Q8IWV8 1755 aa18.92■□□□□ 0.62
COMMD3-208ENST00000470045 U2SURPO15042 1029 aaKnown RBP18.92■□□□□ 0.62
COMMD3-208ENST00000470045 ATP6V1AP38606 617 aa18.92■□□□□ 0.62
COMMD3-208ENST00000470045 AK7Q96M32 723 aa18.92■□□□□ 0.62
COMMD3-208ENST00000470045 FHDC1Q9C0D6 1143 aaPredicted RBP18.92■□□□□ 0.62
COMMD3-208ENST00000470045 NFATC2IPQ8NCF5 419 aa18.91■□□□□ 0.62
COMMD3-208ENST00000470045 MYH14Q7Z406 1995 aaKnown RBP18.91■□□□□ 0.62
COMMD3-208ENST00000470045 RNMTO43148 476 aaKnown RBP18.9■□□□□ 0.62
COMMD3-208ENST00000470045 SSFA2P28290 1259 aa18.9■□□□□ 0.62
COMMD3-208ENST00000470045 SYT17Q9BSW7 474 aa18.9■□□□□ 0.62
COMMD3-208ENST00000470045 SLC52A2Q9HAB3 445 aa18.9■□□□□ 0.62
COMMD3-208ENST00000470045 LGR6Q9HBX8 967 aa18.9■□□□□ 0.62
COMMD3-208ENST00000470045 POLD1P28340 1107 aa18.89■□□□□ 0.61
COMMD3-208ENST00000470045 RSPH6AQ9H0K4 717 aa18.89■□□□□ 0.61
COMMD3-208ENST00000470045 KCPQ6ZWJ8 1503 aa18.89■□□□□ 0.61
COMMD3-208ENST00000470045 C4AP0C0L4 1744 aa18.88■□□□□ 0.61
COMMD3-208ENST00000470045 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.88■□□□□ 0.61
COMMD3-208ENST00000470045 RBM42Q9BTD8 480 aaKnown RBP18.88■□□□□ 0.61
COMMD3-208ENST00000470045 CNTNAP4Q9C0A0 1308 aa18.88■□□□□ 0.61
COMMD3-208ENST00000470045 GAS2L2Q8NHY3 880 aa18.87■□□□□ 0.61
COMMD3-208ENST00000470045 NUDCQ9Y266 331 aa18.87■□□□□ 0.61
COMMD3-208ENST00000470045 GNPATO15228 680 aa18.86■□□□□ 0.61
COMMD3-208ENST00000470045 RC3H1Q5TC82 1133 aaKnown RBP18.86■□□□□ 0.61
COMMD3-208ENST00000470045 PHF14O94880 888 aa18.85■□□□□ 0.61
COMMD3-208ENST00000470045 PRKAR2BP31323 418 aa18.85■□□□□ 0.61
COMMD3-208ENST00000470045 SMIM5Q71RC9 77 aa18.85■□□□□ 0.61
COMMD3-208ENST00000470045 PTCD1O75127 700 aaKnown RBP18.84■□□□□ 0.61
COMMD3-208ENST00000470045 MSL1Q68DK7 614 aa18.84■□□□□ 0.61
COMMD3-208ENST00000470045 CEMIPQ8WUJ3 1361 aa18.83■□□□□ 0.61
COMMD3-208ENST00000470045 GNAT3A8MTJ3 354 aa18.83■□□□□ 0.6
COMMD3-208ENST00000470045 PHACTR3Q96KR7 559 aa18.83■□□□□ 0.6
COMMD3-208ENST00000470045 FCHSD2O94868 740 aa18.82■□□□□ 0.6
COMMD3-208ENST00000470045 U2AF1L5P0DN76 240 aaPredicted RBP18.82■□□□□ 0.6
COMMD3-208ENST00000470045 U2AF1Q01081 240 aaKnown RBP eCLIP18.82■□□□□ 0.6
COMMD3-208ENST00000470045 IL17REQ8NFR9 667 aa18.82■□□□□ 0.6
COMMD3-208ENST00000470045 RTCBQ9Y3I0 505 aaKnown RBP18.82■□□□□ 0.6
COMMD3-208ENST00000470045 DLG5Q8TDM6 1919 aa18.81■□□□□ 0.6
COMMD3-208ENST00000470045 RPS6KA4O75676 772 aa18.81■□□□□ 0.6
COMMD3-208ENST00000470045 CRKLP46109 303 aaKnown RBP18.8■□□□□ 0.6
COMMD3-208ENST00000470045 SLC39A6Q13433 755 aa18.8■□□□□ 0.6
COMMD3-208ENST00000470045 KIF13BQ9NQT8 1826 aa18.79■□□□□ 0.6
COMMD3-208ENST00000470045 DDX10Q13206 875 aaKnown RBP18.79■□□□□ 0.6
COMMD3-208ENST00000470045 RALBP1Q15311 655 aa18.78■□□□□ 0.6
COMMD3-208ENST00000470045 TRAPPC3LQ5T215 181 aa18.78■□□□□ 0.6
COMMD3-208ENST00000470045 CHD4Q14839 1912 aa18.78■□□□□ 0.6
COMMD3-208ENST00000470045 TEFQ10587 303 aa18.77■□□□□ 0.6
COMMD3-208ENST00000470045 DNAJC10Q8IXB1 793 aa18.77■□□□□ 0.6
COMMD3-208ENST00000470045 VSIG10Q8N0Z9 540 aa18.77■□□□□ 0.6
COMMD3-208ENST00000470045 NLGN2Q8NFZ4 835 aa18.77■□□□□ 0.6
COMMD3-208ENST00000470045 ARHGEF1Q92888 912 aaKnown RBP18.77■□□□□ 0.6
COMMD3-208ENST00000470045 INTS5Q6P9B9 1019 aaKnown RBP18.76■□□□□ 0.59
COMMD3-208ENST00000470045 KLHL34Q8N239 644 aa18.76■□□□□ 0.59
COMMD3-208ENST00000470045 KIAA1551Q9HCM1 1747 aa18.75■□□□□ 0.59
COMMD3-208ENST00000470045 CYP19A1P11511 503 aaPredicted RBP18.75■□□□□ 0.59
COMMD3-208ENST00000470045 CD2APQ9Y5K6 639 aa18.75■□□□□ 0.59
COMMD3-208ENST00000470045 GYS1P13807 737 aa18.74■□□□□ 0.59
COMMD3-208ENST00000470045 ZNF790Q6PG37 636 aa18.74■□□□□ 0.59
COMMD3-208ENST00000470045 CCDC87Q9NVE4 849 aa18.74■□□□□ 0.59
COMMD3-208ENST00000470045 HEG1Q9ULI3 1381 aa18.73■□□□□ 0.59
COMMD3-208ENST00000470045 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
COMMD3-208ENST00000470045 TTC5Q8N0Z6 440 aa18.73■□□□□ 0.59
COMMD3-208ENST00000470045 NLGN1Q8N2Q7 840 aa18.73■□□□□ 0.59
COMMD3-208ENST00000470045 PLEKHF1Q96S99 279 aa18.73■□□□□ 0.59
COMMD3-208ENST00000470045 SOS1Q07889 1333 aaPredicted RBP18.73■□□□□ 0.59
COMMD3-208ENST00000470045 MYBBP1AQ9BQG0 1328 aaKnown RBP18.73■□□□□ 0.59
COMMD3-208ENST00000470045 USP42Q9H9J4 1324 aaKnown RBP18.73■□□□□ 0.59
COMMD3-208ENST00000470045 RFC4P35249 363 aa18.72■□□□□ 0.59
COMMD3-208ENST00000470045 ZEB1P37275 1124 aaPredicted RBP18.72■□□□□ 0.59
COMMD3-208ENST00000470045 ZNF496Q96IT1 587 aaPredicted RBP18.72■□□□□ 0.59
COMMD3-208ENST00000470045 KDM3BQ7LBC6 1761 aa18.71■□□□□ 0.59
COMMD3-208ENST00000470045 MMP10P09238 476 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms