RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 YY1P25490 414 aa22.2■■□□□ 1.14
COL9A3-208ENST00000469802 ZNF530Q6P9A1 599 aaPredicted RBP22.2■■□□□ 1.14
COL9A3-208ENST00000469802 FLAD1Q8NFF5 587 aa22.2■■□□□ 1.14
COL9A3-208ENST00000469802 ATG3Q9NT62 314 aa22.2■■□□□ 1.14
COL9A3-208ENST00000469802 MTHFSP49914 203 aa22.19■■□□□ 1.14
COL9A3-208ENST00000469802 SULT6B1Q6IMI4 303 aa22.19■■□□□ 1.14
COL9A3-208ENST00000469802 LINC00116Q8NCU8 138 aa22.19■■□□□ 1.14
COL9A3-208ENST00000469802 TJP1Q07157 1748 aa22.18■■□□□ 1.14
COL9A3-208ENST00000469802 ITPK1Q13572 414 aa22.18■■□□□ 1.14
COL9A3-208ENST00000469802 AK7Q96M32 723 aa22.18■■□□□ 1.14
COL9A3-208ENST00000469802 C4AP0C0L4 1744 aa22.17■■□□□ 1.14
COL9A3-208ENST00000469802 MRC1P22897 1456 aa22.17■■□□□ 1.14
COL9A3-208ENST00000469802 MSH5O43196 834 aa22.17■■□□□ 1.14
COL9A3-208ENST00000469802 MYH14Q7Z406 1995 aaKnown RBP22.17■■□□□ 1.14
COL9A3-208ENST00000469802 CC2D1BQ5T0F9 858 aaKnown RBP22.16■■□□□ 1.14
COL9A3-208ENST00000469802 SSFA2P28290 1259 aa22.15■■□□□ 1.14
COL9A3-208ENST00000469802 MSL1Q68DK7 614 aa22.15■■□□□ 1.14
COL9A3-208ENST00000469802 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.14■■□□□ 1.13
COL9A3-208ENST00000469802 ATP6V1AP38606 617 aa22.14■■□□□ 1.13
COL9A3-208ENST00000469802 SLC4A9Q96Q91 983 aa22.14■■□□□ 1.13
COL9A3-208ENST00000469802 C1orf141Q5JVX7 400 aa22.13■■□□□ 1.13
COL9A3-208ENST00000469802 KLHL34Q8N239 644 aa22.12■■□□□ 1.13
COL9A3-208ENST00000469802 NLGN2Q8NFZ4 835 aa22.12■■□□□ 1.13
COL9A3-208ENST00000469802 KIF13BQ9NQT8 1826 aa22.12■■□□□ 1.13
COL9A3-208ENST00000469802 GOLGB1Q14789 3259 aaKnown RBP22.11■■□□□ 1.13
COL9A3-208ENST00000469802 PHF14O94880 888 aa22.11■■□□□ 1.13
COL9A3-208ENST00000469802 SMIM5Q71RC9 77 aa22.11■■□□□ 1.13
COL9A3-208ENST00000469802 UBR2Q8IWV8 1755 aa22.11■■□□□ 1.13
COL9A3-208ENST00000469802 GNPATO15228 680 aa22.1■■□□□ 1.13
COL9A3-208ENST00000469802 CABP4P57796 275 aa22.1■■□□□ 1.13
COL9A3-208ENST00000469802 SIPA1L3O60292 1781 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-208ENST00000469802 DIAPH1O60610 1272 aaKnown RBP22.09■■□□□ 1.13
COL9A3-208ENST00000469802 CNTNAP4Q9C0A0 1308 aa22.08■■□□□ 1.13
COL9A3-208ENST00000469802 AKAP4Q5JQC9 854 aa22.08■■□□□ 1.13
COL9A3-208ENST00000469802 KIAA1551Q9HCM1 1747 aa22.08■■□□□ 1.12
COL9A3-208ENST00000469802 HMOX1P09601 288 aa22.07■■□□□ 1.12
COL9A3-208ENST00000469802 NFATC2IPQ8NCF5 419 aa22.07■■□□□ 1.12
COL9A3-208ENST00000469802 RC3H1Q5TC82 1133 aaKnown RBP22.06■■□□□ 1.12
COL9A3-208ENST00000469802 RBM42Q9BTD8 480 aaKnown RBP22.06■■□□□ 1.12
COL9A3-208ENST00000469802 CD2APQ9Y5K6 639 aa22.06■■□□□ 1.12
COL9A3-208ENST00000469802 KCPQ6ZWJ8 1503 aa22.06■■□□□ 1.12
COL9A3-208ENST00000469802 GPR162Q16538 588 aa22.05■■□□□ 1.12
COL9A3-208ENST00000469802 MTHFSDQ2M296 383 aaKnown RBP22.03■■□□□ 1.12
COL9A3-208ENST00000469802 SLC52A2Q9HAB3 445 aa22.03■■□□□ 1.12
COL9A3-208ENST00000469802 RTCBQ9Y3I0 505 aaKnown RBP22.03■■□□□ 1.12
COL9A3-208ENST00000469802 ADRA2BP18089 450 aa22.02■■□□□ 1.12
COL9A3-208ENST00000469802 RNMTO43148 476 aaKnown RBP22.01■■□□□ 1.11
COL9A3-208ENST00000469802 PTCD1O75127 700 aaKnown RBP22.01■■□□□ 1.11
COL9A3-208ENST00000469802 YBX3P16989 372 aaKnown RBP eCLIP22.01■■□□□ 1.11
COL9A3-208ENST00000469802 LGR6Q9HBX8 967 aa22.01■■□□□ 1.11
COL9A3-208ENST00000469802 BRCA1P38398 1863 aaKnown RBP22■■□□□ 1.11
COL9A3-208ENST00000469802 RPS6KA4O75676 772 aa22■■□□□ 1.11
COL9A3-208ENST00000469802 ZNF784Q8NCA9 323 aaPredicted RBP22■■□□□ 1.11
COL9A3-208ENST00000469802 TRAPPC3LQ5T215 181 aa21.99■■□□□ 1.11
COL9A3-208ENST00000469802 N4BP2Q86UW6 1770 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-208ENST00000469802 CRKLP46109 303 aaKnown RBP21.98■■□□□ 1.11
COL9A3-208ENST00000469802 CNGB1Q14028 1251 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-208ENST00000469802 PELP1Q8IZL8 1130 aaKnown RBP21.98■■□□□ 1.11
COL9A3-208ENST00000469802 ARHGEF1Q92888 912 aaKnown RBP21.98■■□□□ 1.11
COL9A3-208ENST00000469802 C10orf71Q711Q0 1435 aa21.97■■□□□ 1.11
COL9A3-208ENST00000469802 U2SURPO15042 1029 aaKnown RBP21.96■■□□□ 1.11
COL9A3-208ENST00000469802 MMP10P09238 476 aa21.96■■□□□ 1.11
COL9A3-208ENST00000469802 GRIN3BO60391 1043 aa21.95■■□□□ 1.1
COL9A3-208ENST00000469802 GYS1P13807 737 aa21.95■■□□□ 1.1
COL9A3-208ENST00000469802 NLGN1Q8N2Q7 840 aa21.95■■□□□ 1.1
COL9A3-208ENST00000469802 PXDNLA1KZ92 1463 aa21.95■■□□□ 1.1
COL9A3-208ENST00000469802 PPP2R1AP30153 589 aa21.93■■□□□ 1.1
COL9A3-208ENST00000469802 RFC4P35249 363 aa21.93■■□□□ 1.1
COL9A3-208ENST00000469802 SLC39A6Q13433 755 aa21.93■■□□□ 1.1
COL9A3-208ENST00000469802 INTS5Q6P9B9 1019 aaKnown RBP21.93■■□□□ 1.1
COL9A3-208ENST00000469802 GAS2L2Q8NHY3 880 aa21.93■■□□□ 1.1
COL9A3-208ENST00000469802 CFAP53Q96M91 514 aa21.93■■□□□ 1.1
COL9A3-208ENST00000469802 CEMIPQ8WUJ3 1361 aa21.92■■□□□ 1.1
COL9A3-208ENST00000469802 USP42Q9H9J4 1324 aaKnown RBP21.92■■□□□ 1.1
COL9A3-208ENST00000469802 DNAJC10Q8IXB1 793 aa21.92■■□□□ 1.1
COL9A3-208ENST00000469802 RSPH6AQ9H0K4 717 aa21.92■■□□□ 1.1
COL9A3-208ENST00000469802 AFDNP55196 1824 aaKnown RBP21.9■■□□□ 1.1
COL9A3-208ENST00000469802 ARFGEF1Q9Y6D6 1849 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 SOS1Q07889 1333 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-208ENST00000469802 NRXN2Q9P2S2 1712 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 GNAT3A8MTJ3 354 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 CYP19A1P11511 503 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-208ENST00000469802 VSIG10Q8N0Z9 540 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 CCDC87Q9NVE4 849 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 DLG5Q8TDM6 1919 aa21.9■■□□□ 1.1
COL9A3-208ENST00000469802 SCN7AQ01118 1682 aa21.89■■□□□ 1.1
COL9A3-208ENST00000469802 IL17REQ8NFR9 667 aa21.89■■□□□ 1.09
COL9A3-208ENST00000469802 PRKAR2BP31323 418 aa21.88■■□□□ 1.09
COL9A3-208ENST00000469802 PHACTR3Q96KR7 559 aa21.88■■□□□ 1.09
COL9A3-208ENST00000469802 SRP68Q9UHB9 627 aaKnown RBP21.88■■□□□ 1.09
COL9A3-208ENST00000469802 ADCY9O60503 1353 aa21.87■■□□□ 1.09
COL9A3-208ENST00000469802 COL15A1P39059 1388 aa21.87■■□□□ 1.09
COL9A3-208ENST00000469802 NUDCQ9Y266 331 aa21.86■■□□□ 1.09
COL9A3-208ENST00000469802 DLEC1Q9Y238 1755 aa21.85■■□□□ 1.09
COL9A3-208ENST00000469802 TGFB2P61812 414 aa21.85■■□□□ 1.09
COL9A3-208ENST00000469802 FKBP8Q14318 412 aa21.85■■□□□ 1.09
COL9A3-208ENST00000469802 ZBTB1Q9Y2K1 713 aa21.85■■□□□ 1.09
COL9A3-208ENST00000469802 DDR1Q08345 913 aa21.84■■□□□ 1.09
COL9A3-208ENST00000469802 TEFQ10587 303 aa21.84■■□□□ 1.09
COL9A3-208ENST00000469802 PARP3Q9Y6F1 533 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms