RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 FLAD1Q8NFF5 587 aa28.76■■■□□ 2.19
SHANK1-206ENST00000468654 AK7Q96M32 723 aa28.76■■■□□ 2.19
SHANK1-206ENST00000468654 PLEKHO1Q53GL0 409 aaPredicted RBP28.75■■■□□ 2.19
SHANK1-206ENST00000468654 ASAP1Q9ULH1 1129 aa28.75■■■□□ 2.19
SHANK1-206ENST00000468654 YBX3P16989 372 aaKnown RBP eCLIP28.74■■■□□ 2.19
SHANK1-206ENST00000468654 AEBP1Q8IUX7 1158 aa28.74■■■□□ 2.19
SHANK1-206ENST00000468654 LINC00116Q8NCU8 138 aa28.74■■■□□ 2.19
SHANK1-206ENST00000468654 TJP1Q07157 1748 aa28.74■■■□□ 2.19
SHANK1-206ENST00000468654 KDM6AO15550 1401 aaPredicted RBP28.73■■■□□ 2.19
SHANK1-206ENST00000468654 HSP90AB1P08238 724 aaKnown RBP28.73■■■□□ 2.19
SHANK1-206ENST00000468654 AMOTQ4VCS5 1084 aa28.73■■■□□ 2.19
SHANK1-206ENST00000468654 SMIM5Q71RC9 77 aa28.73■■■□□ 2.19
SHANK1-206ENST00000468654 PER1O15534 1290 aaPredicted RBP28.72■■■□□ 2.19
SHANK1-206ENST00000468654 IL13P35225 146 aa28.72■■■□□ 2.19
SHANK1-206ENST00000468654 ZNF530Q6P9A1 599 aaPredicted RBP28.72■■■□□ 2.19
SHANK1-206ENST00000468654 DCAF5Q96JK2 942 aa28.72■■■□□ 2.19
SHANK1-206ENST00000468654 N4BP2Q86UW6 1770 aaPredicted RBP28.72■■■□□ 2.19
SHANK1-206ENST00000468654 BRCA1P38398 1863 aaKnown RBP28.72■■■□□ 2.19
SHANK1-206ENST00000468654 ERVV-2B6SEH9 535 aa28.71■■■□□ 2.19
SHANK1-206ENST00000468654 PHF14O94880 888 aa28.71■■■□□ 2.19
SHANK1-206ENST00000468654 ATG3Q9NT62 314 aa28.71■■■□□ 2.19
SHANK1-206ENST00000468654 ITPK1Q13572 414 aa28.7■■■□□ 2.18
SHANK1-206ENST00000468654 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.69■■■□□ 2.18
SHANK1-206ENST00000468654 SULT6B1Q6IMI4 303 aa28.69■■■□□ 2.18
SHANK1-206ENST00000468654 SSFA2P28290 1259 aa28.68■■■□□ 2.18
SHANK1-206ENST00000468654 ATP6V1AP38606 617 aa28.66■■■□□ 2.18
SHANK1-206ENST00000468654 MTHFSP49914 203 aa28.65■■■□□ 2.18
SHANK1-206ENST00000468654 CD2APQ9Y5K6 639 aa28.65■■■□□ 2.18
SHANK1-206ENST00000468654 NPC1L1Q9UHC9 1359 aa28.64■■■□□ 2.18
SHANK1-206ENST00000468654 C1orf141Q5JVX7 400 aa28.64■■■□□ 2.18
SHANK1-206ENST00000468654 GNPATO15228 680 aa28.63■■■□□ 2.17
SHANK1-206ENST00000468654 ADAMTS7Q9UKP4 1686 aa28.63■■■□□ 2.17
SHANK1-206ENST00000468654 CC2D1BQ5T0F9 858 aaKnown RBP28.62■■■□□ 2.17
SHANK1-206ENST00000468654 SLC4A9Q96Q91 983 aa28.62■■■□□ 2.17
SHANK1-206ENST00000468654 CABP4P57796 275 aa28.61■■■□□ 2.17
SHANK1-206ENST00000468654 GRIN3BO60391 1043 aa28.6■■■□□ 2.17
SHANK1-206ENST00000468654 ADCY9O60503 1353 aa28.58■■■□□ 2.17
SHANK1-206ENST00000468654 ARFGEF1Q9Y6D6 1849 aa28.57■■■□□ 2.16
SHANK1-206ENST00000468654 C1QTNF8P60827 252 aa28.57■■■□□ 2.16
SHANK1-206ENST00000468654 RBM42Q9BTD8 480 aaKnown RBP28.57■■■□□ 2.16
SHANK1-206ENST00000468654 COL3A1P02461 1466 aaPredicted RBP28.57■■■□□ 2.16
SHANK1-206ENST00000468654 MRC1P22897 1456 aa28.57■■■□□ 2.16
SHANK1-206ENST00000468654 UBR2Q8IWV8 1755 aa28.57■■■□□ 2.16
SHANK1-206ENST00000468654 ATP10DQ9P241 1426 aa28.56■■■□□ 2.16
SHANK1-206ENST00000468654 PXDNLA1KZ92 1463 aa28.55■■■□□ 2.16
SHANK1-206ENST00000468654 CNTNAP4Q9C0A0 1308 aa28.55■■■□□ 2.16
SHANK1-206ENST00000468654 AKAP4Q5JQC9 854 aa28.55■■■□□ 2.16
SHANK1-206ENST00000468654 DIAPH1O60610 1272 aaKnown RBP28.54■■■□□ 2.16
SHANK1-206ENST00000468654 HMOX1P09601 288 aa28.54■■■□□ 2.16
SHANK1-206ENST00000468654 C10orf71Q711Q0 1435 aa28.53■■■□□ 2.16
SHANK1-206ENST00000468654 GIGYF1O75420 1035 aaPredicted RBP28.53■■■□□ 2.16
SHANK1-206ENST00000468654 RC3H1Q5TC82 1133 aaKnown RBP28.53■■■□□ 2.16
SHANK1-206ENST00000468654 NFATC2IPQ8NCF5 419 aa28.53■■■□□ 2.16
SHANK1-206ENST00000468654 RTCBQ9Y3I0 505 aaKnown RBP28.52■■■□□ 2.16
SHANK1-206ENST00000468654 WWC3Q9ULE0 1092 aa28.51■■■□□ 2.15
SHANK1-206ENST00000468654 SIPA1L3O60292 1781 aaPredicted RBP28.51■■■□□ 2.15
SHANK1-206ENST00000468654 CEP350Q5VT06 3117 aa28.51■■■□□ 2.15
SHANK1-206ENST00000468654 SENP3-EIF4A1A0A087X0R7 540 aa28.5■■■□□ 2.15
SHANK1-206ENST00000468654 MMP10P09238 476 aa28.5■■■□□ 2.15
SHANK1-206ENST00000468654 AFDNP55196 1824 aaKnown RBP28.5■■■□□ 2.15
SHANK1-206ENST00000468654 PTCD1O75127 700 aaKnown RBP28.49■■■□□ 2.15
SHANK1-206ENST00000468654 ADRA2BP18089 450 aa28.49■■■□□ 2.15
SHANK1-206ENST00000468654 SLC52A2Q9HAB3 445 aa28.48■■■□□ 2.15
SHANK1-206ENST00000468654 RPS6KA4O75676 772 aa28.47■■■□□ 2.15
SHANK1-206ENST00000468654 TRAPPC3LQ5T215 181 aa28.47■■■□□ 2.15
SHANK1-206ENST00000468654 KCPQ6ZWJ8 1503 aa28.47■■■□□ 2.15
SHANK1-206ENST00000468654 RNMTO43148 476 aaKnown RBP28.46■■■□□ 2.15
SHANK1-206ENST00000468654 MTHFSDQ2M296 383 aaKnown RBP28.46■■■□□ 2.15
SHANK1-206ENST00000468654 LGR6Q9HBX8 967 aa28.46■■■□□ 2.15
SHANK1-206ENST00000468654 CNGB1Q14028 1251 aaPredicted RBP28.45■■■□□ 2.14
SHANK1-206ENST00000468654 ARHGEF1Q92888 912 aaKnown RBP28.45■■■□□ 2.14
SHANK1-206ENST00000468654 CRKLP46109 303 aaKnown RBP28.44■■■□□ 2.14
SHANK1-206ENST00000468654 DLEC1Q9Y238 1755 aa28.44■■■□□ 2.14
SHANK1-206ENST00000468654 GYS1P13807 737 aa28.42■■■□□ 2.14
SHANK1-206ENST00000468654 NRXN2Q9P2S2 1712 aa28.41■■■□□ 2.14
SHANK1-206ENST00000468654 NLGN1Q8N2Q7 840 aa28.41■■■□□ 2.14
SHANK1-206ENST00000468654 RFC4P35249 363 aa28.4■■■□□ 2.14
SHANK1-206ENST00000468654 U2SURPO15042 1029 aaKnown RBP28.39■■■□□ 2.14
SHANK1-206ENST00000468654 SBF1O95248 1867 aa28.39■■■□□ 2.14
SHANK1-206ENST00000468654 SCN7AQ01118 1682 aa28.37■■■□□ 2.13
SHANK1-206ENST00000468654 SLC39A6Q13433 755 aa28.36■■■□□ 2.13
SHANK1-206ENST00000468654 INTS5Q6P9B9 1019 aaKnown RBP28.35■■■□□ 2.13
SHANK1-206ENST00000468654 DNAJC10Q8IXB1 793 aa28.35■■■□□ 2.13
SHANK1-206ENST00000468654 USP42Q9H9J4 1324 aaKnown RBP28.35■■■□□ 2.13
SHANK1-206ENST00000468654 GAS2L2Q8NHY3 880 aa28.34■■■□□ 2.13
SHANK1-206ENST00000468654 CFAP53Q96M91 514 aa28.34■■■□□ 2.13
SHANK1-206ENST00000468654 GPBP1L1Q9HC44 474 aaPredicted RBP28.34■■■□□ 2.13
SHANK1-206ENST00000468654 SRP68Q9UHB9 627 aaKnown RBP28.34■■■□□ 2.13
SHANK1-206ENST00000468654 ZNF526Q8TF50 670 aaPredicted RBP28.33■■■□□ 2.13
SHANK1-206ENST00000468654 CCDC87Q9NVE4 849 aa28.33■■■□□ 2.13
SHANK1-206ENST00000468654 TGFB2P61812 414 aa28.32■■■□□ 2.12
SHANK1-206ENST00000468654 A0A0G2JLW4 131 aa28.31■■■□□ 2.12
SHANK1-206ENST00000468654 CYP19A1P11511 503 aaPredicted RBP28.31■■■□□ 2.12
SHANK1-206ENST00000468654 SOS1Q07889 1333 aaPredicted RBP28.31■■■□□ 2.12
SHANK1-206ENST00000468654 CCDC88AQ3V6T2 1871 aa28.3■■■□□ 2.12
SHANK1-206ENST00000468654 VSIG10Q8N0Z9 540 aa28.3■■■□□ 2.12
SHANK1-206ENST00000468654 RSPH6AQ9H0K4 717 aa28.3■■■□□ 2.12
SHANK1-206ENST00000468654 PARP3Q9Y6F1 533 aa28.3■■■□□ 2.12
SHANK1-206ENST00000468654 ANKRD31Q8N7Z5 1873 aa28.29■■■□□ 2.12
SHANK1-206ENST00000468654 GNAT3A8MTJ3 354 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms