RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 ATG3Q9NT62 314 aa20.23■□□□□ 0.83
CXCR4-203ENST00000466288 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.23■□□□□ 0.83
CXCR4-203ENST00000466288 C10orf71Q711Q0 1435 aa20.22■□□□□ 0.83
CXCR4-203ENST00000466288 KIAA1551Q9HCM1 1747 aa20.22■□□□□ 0.83
CXCR4-203ENST00000466288 TMF1P82094 1093 aa20.21■□□□□ 0.83
CXCR4-203ENST00000466288 NLGN1Q8N2Q7 840 aa20.21■□□□□ 0.83
CXCR4-203ENST00000466288 KIF13BQ9NQT8 1826 aa20.21■□□□□ 0.83
CXCR4-203ENST00000466288 PHKG2P15735 406 aa20.2■□□□□ 0.82
CXCR4-203ENST00000466288 DPEP1P16444 411 aa20.2■□□□□ 0.82
CXCR4-203ENST00000466288 TRAPPC3LQ5T215 181 aa20.2■□□□□ 0.82
CXCR4-203ENST00000466288 RBM46Q8TBY0 533 aaKnown RBP20.2■□□□□ 0.82
CXCR4-203ENST00000466288 IFNL2Q8IZJ0 200 aa20.19■□□□□ 0.82
CXCR4-203ENST00000466288 SLC4A9Q96Q91 983 aa20.19■□□□□ 0.82
CXCR4-203ENST00000466288 EYA1Q99502 592 aa20.19■□□□□ 0.82
CXCR4-203ENST00000466288 CARD14Q9BXL6 1004 aa20.19■□□□□ 0.82
CXCR4-203ENST00000466288 RTCBQ9Y3I0 505 aaKnown RBP20.19■□□□□ 0.82
CXCR4-203ENST00000466288 FCHSD2O94868 740 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 KDRP35968 1356 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 KCNA3P22001 575 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 HTRA3P83110 453 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 ARHGEF1Q92888 912 aaKnown RBP20.18■□□□□ 0.82
CXCR4-203ENST00000466288 KLRG1Q96E93 195 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 CCDC87Q9NVE4 849 aa20.18■□□□□ 0.82
CXCR4-203ENST00000466288 WASHC2AQ641Q2 1341 aa20.17■□□□□ 0.82
CXCR4-203ENST00000466288 N4BP2Q86UW6 1770 aaPredicted RBP20.17■□□□□ 0.82
CXCR4-203ENST00000466288 PPM1GO15355 546 aaPredicted RBP20.17■□□□□ 0.82
CXCR4-203ENST00000466288 GYS1P13807 737 aa20.17■□□□□ 0.82
CXCR4-203ENST00000466288 COL13A1Q5TAT6 717 aaPredicted RBP20.17■□□□□ 0.82
CXCR4-203ENST00000466288 C9orf131Q5VYM1 1079 aa20.17■□□□□ 0.82
CXCR4-203ENST00000466288 JMYQ8N9B5 988 aa20.17■□□□□ 0.82
CXCR4-203ENST00000466288 ADRA2BP18089 450 aa20.16■□□□□ 0.82
CXCR4-203ENST00000466288 RC3H1Q5TC82 1133 aaKnown RBP20.15■□□□□ 0.82
CXCR4-203ENST00000466288 KIF20BQ96Q89 1820 aa20.15■□□□□ 0.82
CXCR4-203ENST00000466288 FSTL1Q12841 308 aa20.14■□□□□ 0.81
CXCR4-203ENST00000466288 PLEKHG2Q9H7P9 1386 aa20.13■□□□□ 0.81
CXCR4-203ENST00000466288 C16orf71Q8IYS4 520 aaPredicted RBP20.13■□□□□ 0.81
CXCR4-203ENST00000466288 WDR90Q96KV7 1748 aa20.13■□□□□ 0.81
CXCR4-203ENST00000466288 PARP3Q9Y6F1 533 aa20.13■□□□□ 0.81
CXCR4-203ENST00000466288 CNTNAP4Q9C0A0 1308 aa20.13■□□□□ 0.81
CXCR4-203ENST00000466288 RPS6KA4O75676 772 aa20.12■□□□□ 0.81
CXCR4-203ENST00000466288 RFC4P35249 363 aa20.12■□□□□ 0.81
CXCR4-203ENST00000466288 C4AP0C0L4 1744 aa20.12■□□□□ 0.81
CXCR4-203ENST00000466288 CDCA8Q53HL2 280 aa20.11■□□□□ 0.81
CXCR4-203ENST00000466288 DCAF5Q96JK2 942 aa20.11■□□□□ 0.81
CXCR4-203ENST00000466288 RBM42Q9BTD8 480 aaKnown RBP20.11■□□□□ 0.81
CXCR4-203ENST00000466288 ERVV-2B6SEH9 535 aa20.11■□□□□ 0.81
CXCR4-203ENST00000466288 PIM2Q9P1W9 311 aa20.11■□□□□ 0.81
CXCR4-203ENST00000466288 ANKRD26Q9UPS8 1709 aa20.1■□□□□ 0.81
CXCR4-203ENST00000466288 KCPQ6ZWJ8 1503 aa20.1■□□□□ 0.81
CXCR4-203ENST00000466288 POLKQ9UBT6 870 aa20.1■□□□□ 0.81
CXCR4-203ENST00000466288 BRCA1P38398 1863 aaKnown RBP20.09■□□□□ 0.81
CXCR4-203ENST00000466288 ZNF831Q5JPB2 1677 aa20.09■□□□□ 0.81
CXCR4-203ENST00000466288 KDM2BQ8NHM5 1336 aa20.09■□□□□ 0.81
CXCR4-203ENST00000466288 EIF4A2Q14240 407 aaKnown RBP20.08■□□□□ 0.81
CXCR4-203ENST00000466288 DALRD3Q5D0E6 543 aaKnown RBP20.08■□□□□ 0.81
CXCR4-203ENST00000466288 RRAGCQ9HB90 399 aa20.08■□□□□ 0.81
CXCR4-203ENST00000466288 RNF181Q9P0P0 153 aa20.07■□□□□ 0.8
CXCR4-203ENST00000466288 DDR1Q08345 913 aa20.05■□□□□ 0.8
CXCR4-203ENST00000466288 FKBP8Q14318 412 aa20.05■□□□□ 0.8
CXCR4-203ENST00000466288 COL5A3P25940 1745 aaPredicted RBP20.05■□□□□ 0.8
CXCR4-203ENST00000466288 CAPN15O75808 1086 aa20.05■□□□□ 0.8
CXCR4-203ENST00000466288 HSP90AB1P08238 724 aaKnown RBP20.05■□□□□ 0.8
CXCR4-203ENST00000466288 SRP68Q9UHB9 627 aaKnown RBP20.05■□□□□ 0.8
CXCR4-203ENST00000466288 ARFGEF1Q9Y6D6 1849 aa20.04■□□□□ 0.8
CXCR4-203ENST00000466288 CHRNA5P30532 468 aa20.04■□□□□ 0.8
CXCR4-203ENST00000466288 TNS4Q8IZW8 715 aa20.04■□□□□ 0.8
CXCR4-203ENST00000466288 KDM6AO15550 1401 aaPredicted RBP20.03■□□□□ 0.8
CXCR4-203ENST00000466288 USP42Q9H9J4 1324 aaKnown RBP20.03■□□□□ 0.8
CXCR4-203ENST00000466288 CRKLP46109 303 aaKnown RBP20.03■□□□□ 0.8
CXCR4-203ENST00000466288 SMC1BQ8NDV3 1235 aa20.03■□□□□ 0.8
CXCR4-203ENST00000466288 PRELPP51888 382 aa20.02■□□□□ 0.8
CXCR4-203ENST00000466288 CABP4P57796 275 aa20.02■□□□□ 0.8
CXCR4-203ENST00000466288 MYH14Q7Z406 1995 aaKnown RBP20.02■□□□□ 0.79
CXCR4-203ENST00000466288 PTCD1O75127 700 aaKnown RBP20.01■□□□□ 0.79
CXCR4-203ENST00000466288 POLRMTO00411 1230 aaKnown RBP20■□□□□ 0.79
CXCR4-203ENST00000466288 TM4SF1P30408 202 aa20■□□□□ 0.79
CXCR4-203ENST00000466288 PLEKHO1Q53GL0 409 aaPredicted RBP20■□□□□ 0.79
CXCR4-203ENST00000466288 ZNF530Q6P9A1 599 aaPredicted RBP19.99■□□□□ 0.79
CXCR4-203ENST00000466288 ZC3H4Q9UPT8 1303 aaKnown RBP19.98■□□□□ 0.79
CXCR4-203ENST00000466288 TNNT2P45379 298 aaPredicted RBP19.98■□□□□ 0.79
CXCR4-203ENST00000466288 INTS5Q6P9B9 1019 aaKnown RBP19.98■□□□□ 0.79
CXCR4-203ENST00000466288 TNRC6CQ9HCJ0 1690 aaKnown RBP19.97■□□□□ 0.79
CXCR4-203ENST00000466288 MTHFSP49914 203 aa19.97■□□□□ 0.79
CXCR4-203ENST00000466288 RASSF7Q02833 373 aa19.97■□□□□ 0.79
CXCR4-203ENST00000466288 AMOTQ4VCS5 1084 aa19.97■□□□□ 0.79
CXCR4-203ENST00000466288 NFATC2IPQ8NCF5 419 aa19.97■□□□□ 0.79
CXCR4-203ENST00000466288 GLTPD2A6NH11 291 aa19.95■□□□□ 0.78
CXCR4-203ENST00000466288 HSPA1AP0DMV8 641 aaKnown RBP19.95■□□□□ 0.78
CXCR4-203ENST00000466288 HSPA1BP0DMV9 641 aaKnown RBP19.95■□□□□ 0.78
CXCR4-203ENST00000466288 VEGFAP15692 232 aaPredicted RBP19.94■□□□□ 0.78
CXCR4-203ENST00000466288 LMNB1P20700 586 aa19.94■□□□□ 0.78
CXCR4-203ENST00000466288 SBF1O95248 1867 aa19.94■□□□□ 0.78
CXCR4-203ENST00000466288 USPL1Q5W0Q7 1092 aa19.93■□□□□ 0.78
CXCR4-203ENST00000466288 AEBP1Q8IUX7 1158 aa19.93■□□□□ 0.78
CXCR4-203ENST00000466288 C1orf141Q5JVX7 400 aa19.92■□□□□ 0.78
CXCR4-203ENST00000466288 ADAMTS7Q9UKP4 1686 aa19.92■□□□□ 0.78
CXCR4-203ENST00000466288 ZPR1O75312 459 aa19.92■□□□□ 0.78
CXCR4-203ENST00000466288 TJP1Q07157 1748 aa19.91■□□□□ 0.78
CXCR4-203ENST00000466288 SOS1Q07889 1333 aaPredicted RBP19.91■□□□□ 0.78
CXCR4-203ENST00000466288 NFIXQ14938 502 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms