RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 MYH14Q7Z406 1995 aaKnown RBP28.35■■■□□ 2.13
COL6A1-203ENST00000466285 CCER1Q8TC90 406 aaPredicted RBP28.35■■■□□ 2.13
COL6A1-203ENST00000466285 WWC3Q9ULE0 1092 aa28.35■■■□□ 2.13
COL6A1-203ENST00000466285 VIRMAQ69YN4 1812 aaKnown RBP28.34■■■□□ 2.13
COL6A1-203ENST00000466285 TJP1Q07157 1748 aa28.34■■■□□ 2.13
COL6A1-203ENST00000466285 GNPATO15228 680 aa28.33■■■□□ 2.13
COL6A1-203ENST00000466285 FLAD1Q8NFF5 587 aa28.33■■■□□ 2.13
COL6A1-203ENST00000466285 SCN11AQ9UI33 1791 aa28.32■■■□□ 2.12
COL6A1-203ENST00000466285 ATP6V1AP38606 617 aa28.32■■■□□ 2.12
COL6A1-203ENST00000466285 PLEKHG2Q9H7P9 1386 aa28.32■■■□□ 2.12
COL6A1-203ENST00000466285 KIF13BQ9NQT8 1826 aa28.32■■■□□ 2.12
COL6A1-203ENST00000466285 SSFA2P28290 1259 aa28.31■■■□□ 2.12
COL6A1-203ENST00000466285 N4BP2Q86UW6 1770 aaPredicted RBP28.3■■■□□ 2.12
COL6A1-203ENST00000466285 CD2APQ9Y5K6 639 aa28.3■■■□□ 2.12
COL6A1-203ENST00000466285 CICQ96RK0 1608 aaPredicted RBP28.29■■■□□ 2.12
COL6A1-203ENST00000466285 ZNF530Q6P9A1 599 aaPredicted RBP28.29■■■□□ 2.12
COL6A1-203ENST00000466285 MORC1Q86VD1 984 aa28.28■■■□□ 2.12
COL6A1-203ENST00000466285 KIF7Q2M1P5 1343 aa28.26■■■□□ 2.11
COL6A1-203ENST00000466285 C1QTNF8P60827 252 aa28.25■■■□□ 2.11
COL6A1-203ENST00000466285 AMER1Q5JTC6 1135 aaPredicted RBP28.25■■■□□ 2.11
COL6A1-203ENST00000466285 ATP10DQ9P241 1426 aa28.25■■■□□ 2.11
COL6A1-203ENST00000466285 ADAMTS7Q9UKP4 1686 aa28.24■■■□□ 2.11
COL6A1-203ENST00000466285 DCAF5Q96JK2 942 aa28.24■■■□□ 2.11
COL6A1-203ENST00000466285 RBM42Q9BTD8 480 aaKnown RBP28.24■■■□□ 2.11
COL6A1-203ENST00000466285 ERVV-2B6SEH9 535 aa28.23■■■□□ 2.11
COL6A1-203ENST00000466285 IL13P35225 146 aa28.23■■■□□ 2.11
COL6A1-203ENST00000466285 ADCY9O60503 1353 aa28.23■■■□□ 2.11
COL6A1-203ENST00000466285 PXDNLA1KZ92 1463 aa28.22■■■□□ 2.11
COL6A1-203ENST00000466285 PLEKHO1Q53GL0 409 aaPredicted RBP28.22■■■□□ 2.11
COL6A1-203ENST00000466285 SULT6B1Q6IMI4 303 aa28.22■■■□□ 2.11
COL6A1-203ENST00000466285 GRIN3BO60391 1043 aa28.21■■■□□ 2.11
COL6A1-203ENST00000466285 BRCA1P38398 1863 aaKnown RBP28.21■■■□□ 2.11
COL6A1-203ENST00000466285 MMP10P09238 476 aa28.2■■■□□ 2.1
COL6A1-203ENST00000466285 SENP3-EIF4A1A0A087X0R7 540 aa28.19■■■□□ 2.1
COL6A1-203ENST00000466285 KNSTRNQ9Y448 316 aa28.19■■■□□ 2.1
COL6A1-203ENST00000466285 C10orf71Q711Q0 1435 aa28.18■■■□□ 2.1
COL6A1-203ENST00000466285 CABP4P57796 275 aa28.18■■■□□ 2.1
COL6A1-203ENST00000466285 CNTNAP4Q9C0A0 1308 aa28.18■■■□□ 2.1
COL6A1-203ENST00000466285 MRC1P22897 1456 aa28.17■■■□□ 2.1
COL6A1-203ENST00000466285 GIGYF1O75420 1035 aaPredicted RBP28.17■■■□□ 2.1
COL6A1-203ENST00000466285 PTCD1O75127 700 aaKnown RBP28.16■■■□□ 2.1
COL6A1-203ENST00000466285 HSP90AB1P08238 724 aaKnown RBP28.16■■■□□ 2.1
COL6A1-203ENST00000466285 AMOTQ4VCS5 1084 aa28.16■■■□□ 2.1
COL6A1-203ENST00000466285 HMGB2P26583 209 aaKnown RBP28.15■■■□□ 2.1
COL6A1-203ENST00000466285 MTHFSP49914 203 aa28.15■■■□□ 2.1
COL6A1-203ENST00000466285 ARHGEF1Q92888 912 aaKnown RBP28.15■■■□□ 2.1
COL6A1-203ENST00000466285 RTCBQ9Y3I0 505 aaKnown RBP28.15■■■□□ 2.1
COL6A1-203ENST00000466285 COL3A1P02461 1466 aaPredicted RBP28.15■■■□□ 2.1
COL6A1-203ENST00000466285 NFATC2IPQ8NCF5 419 aa28.14■■■□□ 2.1
COL6A1-203ENST00000466285 C1orf141Q5JVX7 400 aa28.13■■■□□ 2.09
COL6A1-203ENST00000466285 KCPQ6ZWJ8 1503 aa28.13■■■□□ 2.09
COL6A1-203ENST00000466285 HMOX1P09601 288 aa28.12■■■□□ 2.09
COL6A1-203ENST00000466285 GYS1P13807 737 aa28.12■■■□□ 2.09
COL6A1-203ENST00000466285 TRAPPC3LQ5T215 181 aa28.11■■■□□ 2.09
COL6A1-203ENST00000466285 SRP68Q9UHB9 627 aaKnown RBP28.11■■■□□ 2.09
COL6A1-203ENST00000466285 UBR2Q8IWV8 1755 aa28.11■■■□□ 2.09
COL6A1-203ENST00000466285 CEP350Q5VT06 3117 aa28.1■■■□□ 2.09
COL6A1-203ENST00000466285 PER1O15534 1290 aaPredicted RBP28.1■■■□□ 2.09
COL6A1-203ENST00000466285 RPS6KA4O75676 772 aa28.1■■■□□ 2.09
COL6A1-203ENST00000466285 RC3H1Q5TC82 1133 aaKnown RBP28.1■■■□□ 2.09
COL6A1-203ENST00000466285 LGR6Q9HBX8 967 aa28.1■■■□□ 2.09
COL6A1-203ENST00000466285 CRKLP46109 303 aaKnown RBP28.09■■■□□ 2.09
COL6A1-203ENST00000466285 CC2D1BQ5T0F9 858 aaKnown RBP28.09■■■□□ 2.09
COL6A1-203ENST00000466285 ZNF526Q8TF50 670 aaPredicted RBP28.09■■■□□ 2.09
COL6A1-203ENST00000466285 A0A0G2JLW4 131 aa28.05■■■□□ 2.08
COL6A1-203ENST00000466285 ADRA2BP18089 450 aa28.05■■■□□ 2.08
COL6A1-203ENST00000466285 ARFGEF1Q9Y6D6 1849 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 SIPA1L3O60292 1781 aaPredicted RBP28.04■■■□□ 2.08
COL6A1-203ENST00000466285 RFC4P35249 363 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 DDR1Q08345 913 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 SLC39A6Q13433 755 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 CNGB1Q14028 1251 aaPredicted RBP28.04■■■□□ 2.08
COL6A1-203ENST00000466285 AKAP4Q5JQC9 854 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 INTS5Q6P9B9 1019 aaKnown RBP28.04■■■□□ 2.08
COL6A1-203ENST00000466285 DNAJC10Q8IXB1 793 aa28.04■■■□□ 2.08
COL6A1-203ENST00000466285 AFDNP55196 1824 aaKnown RBP28.04■■■□□ 2.08
COL6A1-203ENST00000466285 USP42Q9H9J4 1324 aaKnown RBP28.03■■■□□ 2.08
COL6A1-203ENST00000466285 FKBP8Q14318 412 aa28.03■■■□□ 2.08
COL6A1-203ENST00000466285 NLGN1Q8N2Q7 840 aa28.03■■■□□ 2.08
COL6A1-203ENST00000466285 SLC52A2Q9HAB3 445 aa28.03■■■□□ 2.08
COL6A1-203ENST00000466285 DPEP1P16444 411 aa28.02■■■□□ 2.08
COL6A1-203ENST00000466285 MTHFSDQ2M296 383 aaKnown RBP28.02■■■□□ 2.08
COL6A1-203ENST00000466285 RNMTO43148 476 aaKnown RBP28.01■■■□□ 2.07
COL6A1-203ENST00000466285 GPBP1L1Q9HC44 474 aaPredicted RBP27.99■■■□□ 2.07
COL6A1-203ENST00000466285 BCS1LQ9Y276 419 aa27.99■■■□□ 2.07
COL6A1-203ENST00000466285 KCNA3P22001 575 aa27.98■■■□□ 2.07
COL6A1-203ENST00000466285 CCDC87Q9NVE4 849 aa27.97■■■□□ 2.07
COL6A1-203ENST00000466285 NRXN2Q9P2S2 1712 aa27.97■■■□□ 2.07
COL6A1-203ENST00000466285 SOS1Q07889 1333 aaPredicted RBP27.96■■■□□ 2.07
COL6A1-203ENST00000466285 DIAPH1O60610 1272 aaKnown RBP27.96■■■□□ 2.07
COL6A1-203ENST00000466285 TGFB2P61812 414 aa27.96■■■□□ 2.07
COL6A1-203ENST00000466285 PARP3Q9Y6F1 533 aa27.96■■■□□ 2.07
COL6A1-203ENST00000466285 CYP19A1P11511 503 aaPredicted RBP27.94■■■□□ 2.06
COL6A1-203ENST00000466285 ZBTB1Q9Y2K1 713 aa27.94■■■□□ 2.06
COL6A1-203ENST00000466285 DLEC1Q9Y238 1755 aa27.94■■■□□ 2.06
COL6A1-203ENST00000466285 SCN7AQ01118 1682 aa27.92■■■□□ 2.06
COL6A1-203ENST00000466285 COL15A1P39059 1388 aa27.92■■■□□ 2.06
COL6A1-203ENST00000466285 NPC1L1Q9UHC9 1359 aa27.92■■■□□ 2.06
COL6A1-203ENST00000466285 POLRMTO00411 1230 aaKnown RBP27.92■■■□□ 2.06
COL6A1-203ENST00000466285 USPL1Q5W0Q7 1092 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms