RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
COL7A1-205ENST00000465238 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.89■■□□□ 1.41
COL7A1-205ENST00000465238 ERVV-2B6SEH9 535 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 SSFA2P28290 1259 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 AMOTQ4VCS5 1084 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 LINC00116Q8NCU8 138 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 DCAF5Q96JK2 942 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 ATG3Q9NT62 314 aa23.89■■□□□ 1.41
COL7A1-205ENST00000465238 ATP6V1AP38606 617 aa23.88■■□□□ 1.41
COL7A1-205ENST00000465238 AMIGO3Q86WK7 504 aa23.88■■□□□ 1.41
COL7A1-205ENST00000465238 PHF14O94880 888 aa23.87■■□□□ 1.41
COL7A1-205ENST00000465238 ITPK1Q13572 414 aa23.87■■□□□ 1.41
COL7A1-205ENST00000465238 CD2APQ9Y5K6 639 aa23.87■■□□□ 1.41
COL7A1-205ENST00000465238 ZNF530Q6P9A1 599 aaPredicted RBP23.86■■□□□ 1.41
COL7A1-205ENST00000465238 MTHFSP49914 203 aa23.85■■□□□ 1.41
COL7A1-205ENST00000465238 ZNF831Q5JPB2 1677 aa23.84■■□□□ 1.41
COL7A1-205ENST00000465238 GNPATO15228 680 aa23.84■■□□□ 1.41
COL7A1-205ENST00000465238 GRIN3BO60391 1043 aa23.84■■□□□ 1.41
COL7A1-205ENST00000465238 AEBP1Q8IUX7 1158 aa23.84■■□□□ 1.41
COL7A1-205ENST00000465238 KDRP35968 1356 aa23.83■■□□□ 1.41
COL7A1-205ENST00000465238 SMIM5Q71RC9 77 aa23.83■■□□□ 1.41
COL7A1-205ENST00000465238 KDM6AO15550 1401 aaPredicted RBP23.83■■□□□ 1.4
COL7A1-205ENST00000465238 C1orf141Q5JVX7 400 aa23.82■■□□□ 1.4
COL7A1-205ENST00000465238 SULT6B1Q6IMI4 303 aa23.82■■□□□ 1.4
COL7A1-205ENST00000465238 YBX3P16989 372 aaKnown RBP eCLIP23.81■■□□□ 1.4
COL7A1-205ENST00000465238 IL13P35225 146 aa23.81■■□□□ 1.4
COL7A1-205ENST00000465238 CABP4P57796 275 aa23.81■■□□□ 1.4
COL7A1-205ENST00000465238 RBM42Q9BTD8 480 aaKnown RBP23.8■■□□□ 1.4
COL7A1-205ENST00000465238 PPP2R1AP30153 589 aa23.79■■□□□ 1.4
COL7A1-205ENST00000465238 RALBP1Q15311 655 aa23.78■■□□□ 1.4
COL7A1-205ENST00000465238 SLC4A9Q96Q91 983 aa23.78■■□□□ 1.4
COL7A1-205ENST00000465238 RTCBQ9Y3I0 505 aaKnown RBP23.78■■□□□ 1.4
COL7A1-205ENST00000465238 COL5A3P25940 1745 aaPredicted RBP23.78■■□□□ 1.4
COL7A1-205ENST00000465238 RC3H1Q5TC82 1133 aaKnown RBP23.77■■□□□ 1.4
COL7A1-205ENST00000465238 CFAP53Q96M91 514 aa23.76■■□□□ 1.39
COL7A1-205ENST00000465238 TRAPPC3LQ5T215 181 aa23.75■■□□□ 1.39
COL7A1-205ENST00000465238 CNTNAP4Q9C0A0 1308 aa23.75■■□□□ 1.39
COL7A1-205ENST00000465238 SCN11AQ9UI33 1791 aa23.74■■□□□ 1.39
COL7A1-205ENST00000465238 DIAPH1O60610 1272 aaKnown RBP23.74■■□□□ 1.39
COL7A1-205ENST00000465238 ADRA2BP18089 450 aa23.74■■□□□ 1.39
COL7A1-205ENST00000465238 NFATC2IPQ8NCF5 419 aa23.74■■□□□ 1.39
COL7A1-205ENST00000465238 AKAP4Q5JQC9 854 aa23.72■■□□□ 1.39
COL7A1-205ENST00000465238 NLGN1Q8N2Q7 840 aa23.72■■□□□ 1.39
COL7A1-205ENST00000465238 MYH14Q7Z406 1995 aaKnown RBP23.71■■□□□ 1.39
COL7A1-205ENST00000465238 PTCD1O75127 700 aaKnown RBP23.71■■□□□ 1.39
COL7A1-205ENST00000465238 RPS6KA4O75676 772 aa23.71■■□□□ 1.39
COL7A1-205ENST00000465238 MMP10P09238 476 aa23.71■■□□□ 1.39
COL7A1-205ENST00000465238 ARHGEF1Q92888 912 aaKnown RBP23.7■■□□□ 1.38
COL7A1-205ENST00000465238 CICQ96RK0 1608 aaPredicted RBP23.69■■□□□ 1.38
COL7A1-205ENST00000465238 RFC4P35249 363 aa23.68■■□□□ 1.38
COL7A1-205ENST00000465238 C1QTNF8P60827 252 aa23.68■■□□□ 1.38
COL7A1-205ENST00000465238 KIF13BQ9NQT8 1826 aa23.68■■□□□ 1.38
COL7A1-205ENST00000465238 HMOX1P09601 288 aa23.67■■□□□ 1.38
COL7A1-205ENST00000465238 PRKRIP1Q9H875 184 aaPredicted RBP23.67■■□□□ 1.38
COL7A1-205ENST00000465238 MYBBP1AQ9BQG0 1328 aaKnown RBP23.66■■□□□ 1.38
COL7A1-205ENST00000465238 GIGYF1O75420 1035 aaPredicted RBP23.66■■□□□ 1.38
COL7A1-205ENST00000465238 GYS1P13807 737 aa23.66■■□□□ 1.38
COL7A1-205ENST00000465238 CRKLP46109 303 aaKnown RBP23.66■■□□□ 1.38
COL7A1-205ENST00000465238 SLC52A2Q9HAB3 445 aa23.66■■□□□ 1.38
COL7A1-205ENST00000465238 NUDCQ9Y266 331 aa23.66■■□□□ 1.38
COL7A1-205ENST00000465238 C4AP0C0L4 1744 aa23.66■■□□□ 1.38
COL7A1-205ENST00000465238 TJP1Q07157 1748 aa23.66■■□□□ 1.38
COL7A1-205ENST00000465238 COL3A1P02461 1466 aaPredicted RBP23.66■■□□□ 1.38
COL7A1-205ENST00000465238 VIRMAQ69YN4 1812 aaKnown RBP23.66■■□□□ 1.38
COL7A1-205ENST00000465238 U2SURPO15042 1029 aaKnown RBP23.65■■□□□ 1.38
COL7A1-205ENST00000465238 MRC1P22897 1456 aa23.64■■□□□ 1.38
COL7A1-205ENST00000465238 LGR6Q9HBX8 967 aa23.64■■□□□ 1.37
COL7A1-205ENST00000465238 RNMTO43148 476 aaKnown RBP23.63■■□□□ 1.37
COL7A1-205ENST00000465238 C10orf71Q711Q0 1435 aa23.62■■□□□ 1.37
COL7A1-205ENST00000465238 TGFB2P61812 414 aa23.62■■□□□ 1.37
COL7A1-205ENST00000465238 MTHFSDQ2M296 383 aaKnown RBP23.62■■□□□ 1.37
COL7A1-205ENST00000465238 CCDC87Q9NVE4 849 aa23.62■■□□□ 1.37
COL7A1-205ENST00000465238 WWC3Q9ULE0 1092 aa23.62■■□□□ 1.37
COL7A1-205ENST00000465238 PXDNLA1KZ92 1463 aa23.62■■□□□ 1.37
COL7A1-205ENST00000465238 ADAMTS7Q9UKP4 1686 aa23.61■■□□□ 1.37
COL7A1-205ENST00000465238 ATP10DQ9P241 1426 aa23.61■■□□□ 1.37
COL7A1-205ENST00000465238 ANP32CO43423 234 aa23.61■■□□□ 1.37
COL7A1-205ENST00000465238 PARP3Q9Y6F1 533 aa23.61■■□□□ 1.37
COL7A1-205ENST00000465238 KIAA1551Q9HCM1 1747 aa23.61■■□□□ 1.37
COL7A1-205ENST00000465238 INTS5Q6P9B9 1019 aaKnown RBP23.59■■□□□ 1.37
COL7A1-205ENST00000465238 ADCY9O60503 1353 aa23.59■■□□□ 1.37
COL7A1-205ENST00000465238 N4BP2Q86UW6 1770 aaPredicted RBP23.59■■□□□ 1.37
COL7A1-205ENST00000465238 USP42Q9H9J4 1324 aaKnown RBP23.59■■□□□ 1.37
COL7A1-205ENST00000465238 SENP3-EIF4A1A0A087X0R7 540 aa23.58■■□□□ 1.37
COL7A1-205ENST00000465238 DNAJC10Q8IXB1 793 aa23.58■■□□□ 1.37
COL7A1-205ENST00000465238 U2AF1L5P0DN76 240 aaPredicted RBP23.57■■□□□ 1.36
COL7A1-205ENST00000465238 U2AF1Q01081 240 aaKnown RBP eCLIP23.57■■□□□ 1.36
COL7A1-205ENST00000465238 A0A0G2JLW4 131 aa23.56■■□□□ 1.36
COL7A1-205ENST00000465238 SLC39A6Q13433 755 aa23.56■■□□□ 1.36
COL7A1-205ENST00000465238 SRP68Q9UHB9 627 aaKnown RBP23.56■■□□□ 1.36
COL7A1-205ENST00000465238 KCPQ6ZWJ8 1503 aa23.55■■□□□ 1.36
COL7A1-205ENST00000465238 GPBP1L1Q9HC44 474 aaPredicted RBP23.55■■□□□ 1.36
COL7A1-205ENST00000465238 CYP19A1P11511 503 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-205ENST00000465238 FKBP8Q14318 412 aa23.54■■□□□ 1.36
COL7A1-205ENST00000465238 VSIG10Q8N0Z9 540 aa23.54■■□□□ 1.36
COL7A1-205ENST00000465238 DPEP1P16444 411 aa23.53■■□□□ 1.36
COL7A1-205ENST00000465238 GAS2L2Q8NHY3 880 aa23.53■■□□□ 1.36
COL7A1-205ENST00000465238 BCS1LQ9Y276 419 aa23.53■■□□□ 1.36
COL7A1-205ENST00000465238 BRCA1P38398 1863 aaKnown RBP23.53■■□□□ 1.36
COL7A1-205ENST00000465238 SOS1Q07889 1333 aaPredicted RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms