RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 CRTC2Q53ET0 693 aaPredicted RBP11.67□□□□□ -0.54
PTCD3-205ENST00000464541 TPCN2Q8NHX9 752 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 SLC4A9Q96Q91 983 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 RAB6BQ9NRW1 208 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 KIAA1024Q9UPX6 916 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.66□□□□□ -0.54
PTCD3-205ENST00000464541 ATG7O95352 703 aa11.66□□□□□ -0.54
PTCD3-205ENST00000464541 CTSOP43234 321 aaPredicted RBP11.66□□□□□ -0.54
PTCD3-205ENST00000464541 ZNF594Q96JF6 807 aaPredicted RBP11.65□□□□□ -0.54
PTCD3-205ENST00000464541 C11orf95C9JLR9 678 aaPredicted RBP11.64□□□□□ -0.55
PTCD3-205ENST00000464541 DKK1O94907 266 aa11.64□□□□□ -0.55
PTCD3-205ENST00000464541 FOXD4L5Q5VV16 416 aaPredicted RBP11.64□□□□□ -0.55
PTCD3-205ENST00000464541 ANKMY2Q8IV38 441 aa11.64□□□□□ -0.55
PTCD3-205ENST00000464541 RNF217Q8TC41 542 aa11.64□□□□□ -0.55
PTCD3-205ENST00000464541 ZNF358Q9NW07 568 aa11.64□□□□□ -0.55
PTCD3-205ENST00000464541 MAN1A2O60476 641 aa11.63□□□□□ -0.55
PTCD3-205ENST00000464541 SEC13P55735 322 aa11.63□□□□□ -0.55
PTCD3-205ENST00000464541 CENPCQ03188 943 aa11.63□□□□□ -0.55
PTCD3-205ENST00000464541 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.63□□□□□ -0.55
PTCD3-205ENST00000464541 FHDC1Q9C0D6 1143 aaPredicted RBP11.63□□□□□ -0.55
PTCD3-205ENST00000464541 GRIP2Q9C0E4 1043 aa11.63□□□□□ -0.55
PTCD3-205ENST00000464541 SMTNP53814 917 aa11.62□□□□□ -0.55
PTCD3-205ENST00000464541 TLR1Q15399 786 aa11.62□□□□□ -0.55
PTCD3-205ENST00000464541 SLC27A3Q5K4L6 730 aa11.62□□□□□ -0.55
PTCD3-205ENST00000464541 ARID3AQ99856 593 aa11.62□□□□□ -0.55
PTCD3-205ENST00000464541 STAU1O95793 577 aaKnown RBP11.61□□□□□ -0.55
PTCD3-205ENST00000464541 GTF2E1P29083 439 aaPredicted RBP11.61□□□□□ -0.55
PTCD3-205ENST00000464541 DPYDQ12882 1025 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 MTFR1Q15390 333 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 CDCA8Q53HL2 280 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 LYSMD3Q7Z3D4 306 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.61□□□□□ -0.55
PTCD3-205ENST00000464541 ARXQ96QS3 562 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 DNMT3LQ9UJW3 386 aa11.61□□□□□ -0.55
PTCD3-205ENST00000464541 SPATA31C2B4DYI2 1134 aa11.6□□□□□ -0.55
PTCD3-205ENST00000464541 WDR44Q5JSH3 913 aa11.6□□□□□ -0.55
PTCD3-205ENST00000464541 NBPF15Q8N660 670 aa11.6□□□□□ -0.55
PTCD3-205ENST00000464541 FAM200AQ8TCP9 573 aa11.6□□□□□ -0.55
PTCD3-205ENST00000464541 ZSCAN10Q96SZ4 725 aaPredicted RBP11.6□□□□□ -0.55
PTCD3-205ENST00000464541 NOVA2Q9UNW9 492 aaKnown RBP11.6□□□□□ -0.55
PTCD3-205ENST00000464541 A6NJY4 79 aa11.59□□□□□ -0.55
PTCD3-205ENST00000464541 SNRPBP14678 240 aaKnown RBP11.59□□□□□ -0.55
PTCD3-205ENST00000464541 ZNF787Q6DD87 383 aa11.59□□□□□ -0.55
PTCD3-205ENST00000464541 SERTAD1Q9UHV2 236 aa11.59□□□□□ -0.55
PTCD3-205ENST00000464541 ACIN1Q9UKV3 1341 aaKnown RBP11.59□□□□□ -0.55
PTCD3-205ENST00000464541 CDK2AP1O14519 115 aa11.58□□□□□ -0.56
PTCD3-205ENST00000464541 PPARGC1BQ86YN6 1023 aaKnown RBP11.58□□□□□ -0.56
PTCD3-205ENST00000464541 SFI1A8K8P3 1242 aa11.57□□□□□ -0.56
PTCD3-205ENST00000464541 POTECB2RU33 542 aa11.57□□□□□ -0.56
PTCD3-205ENST00000464541 EPHA4P54764 986 aa11.57□□□□□ -0.56
PTCD3-205ENST00000464541 GNASQ5JWF2 1037 aa11.57□□□□□ -0.56
PTCD3-205ENST00000464541 FIGNL2A6NMB9 653 aa11.56□□□□□ -0.56
PTCD3-205ENST00000464541 TMEM214Q6NUQ4 689 aaKnown RBP11.56□□□□□ -0.56
PTCD3-205ENST00000464541 SCHIP1Q9P0W5 487 aaPredicted RBP11.56□□□□□ -0.56
PTCD3-205ENST00000464541 FOXK2Q01167 660 aa11.55□□□□□ -0.56
PTCD3-205ENST00000464541 SWI5Q1ZZU3 235 aa11.55□□□□□ -0.56
PTCD3-205ENST00000464541 RHBDD1Q8TEB9 315 aa11.55□□□□□ -0.56
PTCD3-205ENST00000464541 ZMIZ1Q9ULJ6 1067 aa11.55□□□□□ -0.56
PTCD3-205ENST00000464541 TAS1R3Q7RTX0 852 aa11.54□□□□□ -0.56
PTCD3-205ENST00000464541 PRICKLE2Q7Z3G6 844 aa11.54□□□□□ -0.56
PTCD3-205ENST00000464541 IQSEC3Q9UPP2 1182 aaPredicted RBP11.54□□□□□ -0.56
PTCD3-205ENST00000464541 NBPF10Q6P3W6 841 aaKnown RBP11.53□□□□□ -0.56
PTCD3-205ENST00000464541 TSEN2Q8NCE0 465 aaKnown RBP11.53□□□□□ -0.56
PTCD3-205ENST00000464541 GAS2L2Q8NHY3 880 aa11.53□□□□□ -0.56
PTCD3-205ENST00000464541 NIFKQ9BYG3 293 aaKnown RBP11.53□□□□□ -0.56
PTCD3-205ENST00000464541 TNS4Q8IZW8 715 aa11.52□□□□□ -0.57
PTCD3-205ENST00000464541 SOBPA7XYQ1 873 aa11.51□□□□□ -0.57
PTCD3-205ENST00000464541 CSB-PGBD3P0DP91 1061 aa11.51□□□□□ -0.57
PTCD3-205ENST00000464541 POU4F2Q12837 409 aa11.51□□□□□ -0.57
PTCD3-205ENST00000464541 STK32AQ8WU08 396 aa11.51□□□□□ -0.57
PTCD3-205ENST00000464541 PTSQ03393 145 aa11.5□□□□□ -0.57
PTCD3-205ENST00000464541 TMEM164Q5U3C3 297 aa11.5□□□□□ -0.57
PTCD3-205ENST00000464541 SLC9A9Q8IVB4 645 aa11.5□□□□□ -0.57
PTCD3-205ENST00000464541 ZNF295-AS1Q8N0V1 137 aa11.5□□□□□ -0.57
PTCD3-205ENST00000464541 HINFPQ9BQA5 517 aa11.5□□□□□ -0.57
PTCD3-205ENST00000464541 C4orf17Q53FE4 359 aa11.49□□□□□ -0.57
PTCD3-205ENST00000464541 NPAS3Q8IXF0 933 aa11.49□□□□□ -0.57
PTCD3-205ENST00000464541 SLC35F4A4IF30 521 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 PSMA6P60900 246 aaKnown RBP11.48□□□□□ -0.57
PTCD3-205ENST00000464541 PDE4CQ08493 712 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 FAM69CQ0P6D2 419 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 TEAD4Q15561 434 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 STAG2Q8N3U4 1231 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 USTQ9Y2C2 406 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 CHMP3Q9Y3E7 222 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 DYRK1BQ9Y463 629 aa11.48□□□□□ -0.57
PTCD3-205ENST00000464541 A0A1B0GTH6 734 aa11.47□□□□□ -0.57
PTCD3-205ENST00000464541 RHOQP17081 205 aa11.47□□□□□ -0.57
PTCD3-205ENST00000464541 IGFBP4P22692 258 aa11.47□□□□□ -0.57
PTCD3-205ENST00000464541 CLP1Q92989 425 aaKnown RBP11.47□□□□□ -0.57
PTCD3-205ENST00000464541 TSPAN10Q9H1Z9 355 aaPredicted RBP11.47□□□□□ -0.57
PTCD3-205ENST00000464541 TIMMDC1Q9NPL8 285 aa11.47□□□□□ -0.57
PTCD3-205ENST00000464541 SENP3-EIF4A1A0A087X0R7 540 aa11.46□□□□□ -0.57
PTCD3-205ENST00000464541 POTEAQ6S8J7 498 aa11.46□□□□□ -0.57
PTCD3-205ENST00000464541 C1orf216Q8TAB5 229 aa11.46□□□□□ -0.57
PTCD3-205ENST00000464541 CABP1Q9NZU7 370 aa11.46□□□□□ -0.57
PTCD3-205ENST00000464541 USP3Q9Y6I4 520 aa11.46□□□□□ -0.57
PTCD3-205ENST00000464541 ATAD2Q6PL18 1390 aa11.45□□□□□ -0.58
PTCD3-205ENST00000464541 WEE1P30291 646 aa11.45□□□□□ -0.58
PTCD3-205ENST00000464541 HIRAP54198 1017 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms