RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 HSPA5P11021 654 aaKnown RBP31.13■■■□□ 2.57
USP4-208ENST00000464168 EIF4G2P78344 907 aaKnown RBP eCLIP31.13■■■□□ 2.57
USP4-208ENST00000464168 PLEKHG2Q9H7P9 1386 aa31.13■■■□□ 2.57
USP4-208ENST00000464168 ERVV-2B6SEH9 535 aa31.09■■■□□ 2.57
USP4-208ENST00000464168 SLC4A9Q96Q91 983 aa31.08■■■□□ 2.57
USP4-208ENST00000464168 DCAF5Q96JK2 942 aa31.07■■■□□ 2.56
USP4-208ENST00000464168 KDRP35968 1356 aa31.06■■■□□ 2.56
USP4-208ENST00000464168 PLEKHO1Q53GL0 409 aaPredicted RBP31.06■■■□□ 2.56
USP4-208ENST00000464168 ATP10DQ9P241 1426 aa31.06■■■□□ 2.56
USP4-208ENST00000464168 CEP350Q5VT06 3117 aa31.05■■■□□ 2.56
USP4-208ENST00000464168 HSP90AB1P08238 724 aaKnown RBP31.05■■■□□ 2.56
USP4-208ENST00000464168 WWC3Q9ULE0 1092 aa31.05■■■□□ 2.56
USP4-208ENST00000464168 RBM42Q9BTD8 480 aaKnown RBP31.03■■■□□ 2.56
USP4-208ENST00000464168 MMP10P09238 476 aa31.02■■■□□ 2.56
USP4-208ENST00000464168 ZNF530Q6P9A1 599 aaPredicted RBP31.02■■■□□ 2.56
USP4-208ENST00000464168 RTCBQ9Y3I0 505 aaKnown RBP31.02■■■□□ 2.56
USP4-208ENST00000464168 AMOTQ4VCS5 1084 aa31.01■■■□□ 2.55
USP4-208ENST00000464168 TRAPPC3LQ5T215 181 aa31.01■■■□□ 2.55
USP4-208ENST00000464168 MORC1Q86VD1 984 aa31.01■■■□□ 2.55
USP4-208ENST00000464168 AEBP1Q8IUX7 1158 aa31.01■■■□□ 2.55
USP4-208ENST00000464168 KDM6AO15550 1401 aaPredicted RBP31■■■□□ 2.55
USP4-208ENST00000464168 RC3H1Q5TC82 1133 aaKnown RBP31■■■□□ 2.55
USP4-208ENST00000464168 ADCY9O60503 1353 aa31■■■□□ 2.55
USP4-208ENST00000464168 CABP4P57796 275 aa30.98■■■□□ 2.55
USP4-208ENST00000464168 NLGN1Q8N2Q7 840 aa30.97■■■□□ 2.55
USP4-208ENST00000464168 ARHGEF1Q92888 912 aaKnown RBP30.97■■■□□ 2.55
USP4-208ENST00000464168 GPBP1L1Q9HC44 474 aaPredicted RBP30.97■■■□□ 2.55
USP4-208ENST00000464168 MTHFSP49914 203 aa30.96■■■□□ 2.55
USP4-208ENST00000464168 CNTNAP4Q9C0A0 1308 aa30.96■■■□□ 2.55
USP4-208ENST00000464168 ZNF831Q5JPB2 1677 aa30.95■■■□□ 2.55
USP4-208ENST00000464168 ADRA2BP18089 450 aa30.95■■■□□ 2.55
USP4-208ENST00000464168 RPS6KA4O75676 772 aa30.94■■■□□ 2.54
USP4-208ENST00000464168 C1orf141Q5JVX7 400 aa30.93■■■□□ 2.54
USP4-208ENST00000464168 SULT6B1Q6IMI4 303 aa30.93■■■□□ 2.54
USP4-208ENST00000464168 ZNF526Q8TF50 670 aaPredicted RBP30.93■■■□□ 2.54
USP4-208ENST00000464168 KNSTRNQ9Y448 316 aa30.93■■■□□ 2.54
USP4-208ENST00000464168 GYS1P13807 737 aa30.92■■■□□ 2.54
USP4-208ENST00000464168 NFATC2IPQ8NCF5 419 aa30.92■■■□□ 2.54
USP4-208ENST00000464168 PXDNLA1KZ92 1463 aa30.91■■■□□ 2.54
USP4-208ENST00000464168 PTCD1O75127 700 aaKnown RBP30.91■■■□□ 2.54
USP4-208ENST00000464168 IL13P35225 146 aa30.91■■■□□ 2.54
USP4-208ENST00000464168 RFC4P35249 363 aa30.91■■■□□ 2.54
USP4-208ENST00000464168 TGFB2P61812 414 aa30.91■■■□□ 2.54
USP4-208ENST00000464168 CCER1Q8TC90 406 aaPredicted RBP30.89■■■□□ 2.54
USP4-208ENST00000464168 CICQ96RK0 1608 aaPredicted RBP30.88■■■□□ 2.53
USP4-208ENST00000464168 COL5A3P25940 1745 aaPredicted RBP30.88■■■□□ 2.53
USP4-208ENST00000464168 A0A0G2JLW4 131 aa30.88■■■□□ 2.53
USP4-208ENST00000464168 AMER1Q5JTC6 1135 aaPredicted RBP30.87■■■□□ 2.53
USP4-208ENST00000464168 C10orf71Q711Q0 1435 aa30.87■■■□□ 2.53
USP4-208ENST00000464168 MYH14Q7Z406 1995 aaKnown RBP30.86■■■□□ 2.53
USP4-208ENST00000464168 KIF13BQ9NQT8 1826 aa30.85■■■□□ 2.53
USP4-208ENST00000464168 CRKLP46109 303 aaKnown RBP30.85■■■□□ 2.53
USP4-208ENST00000464168 CCDC87Q9NVE4 849 aa30.85■■■□□ 2.53
USP4-208ENST00000464168 BCS1LQ9Y276 419 aa30.84■■■□□ 2.53
USP4-208ENST00000464168 PARP3Q9Y6F1 533 aa30.84■■■□□ 2.53
USP4-208ENST00000464168 DPEP1P16444 411 aa30.83■■■□□ 2.53
USP4-208ENST00000464168 KIAA1551Q9HCM1 1747 aa30.83■■■□□ 2.53
USP4-208ENST00000464168 AKAP4Q5JQC9 854 aa30.81■■■□□ 2.52
USP4-208ENST00000464168 SRP68Q9UHB9 627 aaKnown RBP30.81■■■□□ 2.52
USP4-208ENST00000464168 C4AP0C0L4 1744 aa30.8■■■□□ 2.52
USP4-208ENST00000464168 N4BP2Q86UW6 1770 aaPredicted RBP30.79■■■□□ 2.52
USP4-208ENST00000464168 INTS5Q6P9B9 1019 aaKnown RBP30.79■■■□□ 2.52
USP4-208ENST00000464168 KIF3CO14782 793 aa30.78■■■□□ 2.52
USP4-208ENST00000464168 KCNA3P22001 575 aa30.78■■■□□ 2.52
USP4-208ENST00000464168 FKBP8Q14318 412 aa30.78■■■□□ 2.52
USP4-208ENST00000464168 LGR6Q9HBX8 967 aa30.78■■■□□ 2.52
USP4-208ENST00000464168 KIF7Q2M1P5 1343 aa30.77■■■□□ 2.52
USP4-208ENST00000464168 USP42Q9H9J4 1324 aaKnown RBP30.77■■■□□ 2.52
USP4-208ENST00000464168 SLC52A2Q9HAB3 445 aa30.77■■■□□ 2.52
USP4-208ENST00000464168 HSPA6P17066 643 aa30.76■■■□□ 2.51
USP4-208ENST00000464168 ARHGAP27Q6ZUM4 889 aa30.76■■■□□ 2.51
USP4-208ENST00000464168 FCHSD2O94868 740 aa30.75■■■□□ 2.51
USP4-208ENST00000464168 HMOX1P09601 288 aa30.74■■■□□ 2.51
USP4-208ENST00000464168 DDR1Q08345 913 aa30.74■■■□□ 2.51
USP4-208ENST00000464168 DNAJC10Q8IXB1 793 aa30.74■■■□□ 2.51
USP4-208ENST00000464168 SCN11AQ9UI33 1791 aa30.74■■■□□ 2.51
USP4-208ENST00000464168 TJP1Q07157 1748 aa30.73■■■□□ 2.51
USP4-208ENST00000464168 PER1O15534 1290 aaPredicted RBP30.73■■■□□ 2.51
USP4-208ENST00000464168 RNMTO43148 476 aaKnown RBP30.72■■■□□ 2.51
USP4-208ENST00000464168 SLC39A6Q13433 755 aa30.71■■■□□ 2.51
USP4-208ENST00000464168 TM4SF1P30408 202 aa30.7■■■□□ 2.51
USP4-208ENST00000464168 PIM2Q9P1W9 311 aa30.7■■■□□ 2.51
USP4-208ENST00000464168 MTHFSDQ2M296 383 aaKnown RBP30.69■■■□□ 2.5
USP4-208ENST00000464168 CYP19A1P11511 503 aaPredicted RBP30.68■■■□□ 2.5
USP4-208ENST00000464168 SOS1Q07889 1333 aaPredicted RBP30.68■■■□□ 2.5
USP4-208ENST00000464168 POLRMTO00411 1230 aaKnown RBP30.67■■■□□ 2.5
USP4-208ENST00000464168 DIAPH1O60610 1272 aaKnown RBP30.67■■■□□ 2.5
USP4-208ENST00000464168 CC2D1BQ5T0F9 858 aaKnown RBP30.67■■■□□ 2.5
USP4-208ENST00000464168 MRC1P22897 1456 aa30.67■■■□□ 2.5
USP4-208ENST00000464168 BRCA1P38398 1863 aaKnown RBP30.66■■■□□ 2.5
USP4-208ENST00000464168 ADAMTS7Q9UKP4 1686 aa30.66■■■□□ 2.5
USP4-208ENST00000464168 ZPR1O75312 459 aa30.66■■■□□ 2.5
USP4-208ENST00000464168 USPL1Q5W0Q7 1092 aa30.66■■■□□ 2.5
USP4-208ENST00000464168 DALRD3Q5D0E6 543 aaKnown RBP30.65■■■□□ 2.5
USP4-208ENST00000464168 CHRNA5P30532 468 aa30.64■■■□□ 2.5
USP4-208ENST00000464168 C9orf131Q5VYM1 1079 aa30.63■■■□□ 2.49
USP4-208ENST00000464168 KCPQ6ZWJ8 1503 aa30.62■■■□□ 2.49
USP4-208ENST00000464168 NMRK2Q9NPI5 230 aa30.61■■■□□ 2.49
USP4-208ENST00000464168 NARFQ9UHQ1 456 aa30.61■■■□□ 2.49
USP4-208ENST00000464168 ZBTB1Q9Y2K1 713 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms