RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 GPR162Q16538 588 aa25.6■■□□□ 1.69
SF3A1-205ENST00000463818 C1orf141Q5JVX7 400 aa25.6■■□□□ 1.69
SF3A1-205ENST00000463818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.59■■□□□ 1.69
SF3A1-205ENST00000463818 NLGN2Q8NFZ4 835 aa25.58■■□□□ 1.69
SF3A1-205ENST00000463818 RBM42Q9BTD8 480 aaKnown RBP25.58■■□□□ 1.69
SF3A1-205ENST00000463818 CNGB1Q14028 1251 aaPredicted RBP25.57■■□□□ 1.68
SF3A1-205ENST00000463818 C5P01031 1676 aa25.57■■□□□ 1.68
SF3A1-205ENST00000463818 KDRP35968 1356 aa25.56■■□□□ 1.68
SF3A1-205ENST00000463818 SSFA2P28290 1259 aa25.56■■□□□ 1.68
SF3A1-205ENST00000463818 SLC4A9Q96Q91 983 aa25.56■■□□□ 1.68
SF3A1-205ENST00000463818 GNPATO15228 680 aa25.55■■□□□ 1.68
SF3A1-205ENST00000463818 PELP1Q8IZL8 1130 aaKnown RBP25.55■■□□□ 1.68
SF3A1-205ENST00000463818 NFATC2IPQ8NCF5 419 aa25.55■■□□□ 1.68
SF3A1-205ENST00000463818 KDM6AO15550 1401 aaPredicted RBP25.54■■□□□ 1.68
SF3A1-205ENST00000463818 HMOX1P09601 288 aa25.54■■□□□ 1.68
SF3A1-205ENST00000463818 C4BP0C0L5 1744 aa25.54■■□□□ 1.68
SF3A1-205ENST00000463818 COL24A1Q17RW2 1714 aa25.54■■□□□ 1.68
SF3A1-205ENST00000463818 DIAPH1O60610 1272 aaKnown RBP25.53■■□□□ 1.68
SF3A1-205ENST00000463818 TAF1LQ8IZX4 1826 aa25.52■■□□□ 1.68
SF3A1-205ENST00000463818 AKAP4Q5JQC9 854 aa25.51■■□□□ 1.67
SF3A1-205ENST00000463818 NPC1L1Q9UHC9 1359 aa25.5■■□□□ 1.67
SF3A1-205ENST00000463818 CD2APQ9Y5K6 639 aa25.5■■□□□ 1.67
SF3A1-205ENST00000463818 PTCD1O75127 700 aaKnown RBP25.49■■□□□ 1.67
SF3A1-205ENST00000463818 RC3H1Q5TC82 1133 aaKnown RBP25.49■■□□□ 1.67
SF3A1-205ENST00000463818 RTCBQ9Y3I0 505 aaKnown RBP25.49■■□□□ 1.67
SF3A1-205ENST00000463818 TRAPPC3LQ5T215 181 aa25.48■■□□□ 1.67
SF3A1-205ENST00000463818 LGR6Q9HBX8 967 aa25.48■■□□□ 1.67
SF3A1-205ENST00000463818 ZNF784Q8NCA9 323 aaPredicted RBP25.46■■□□□ 1.67
SF3A1-205ENST00000463818 MTHFSDQ2M296 383 aaKnown RBP25.45■■□□□ 1.66
SF3A1-205ENST00000463818 RNMTO43148 476 aaKnown RBP25.44■■□□□ 1.66
SF3A1-205ENST00000463818 RPS6KA4O75676 772 aa25.44■■□□□ 1.66
SF3A1-205ENST00000463818 YBX3P16989 372 aaKnown RBP eCLIP25.44■■□□□ 1.661e-6■□□□□ 9.9
SF3A1-205ENST00000463818 ARHGEF1Q92888 912 aaKnown RBP25.44■■□□□ 1.66
SF3A1-205ENST00000463818 CNTNAP4Q9C0A0 1308 aa25.43■■□□□ 1.66
SF3A1-205ENST00000463818 U2SURPO15042 1029 aaKnown RBP25.43■■□□□ 1.66
SF3A1-205ENST00000463818 GRIN3BO60391 1043 aa25.43■■□□□ 1.66
SF3A1-205ENST00000463818 SLC52A2Q9HAB3 445 aa25.43■■□□□ 1.66
SF3A1-205ENST00000463818 UTRNP46939 3433 aa25.43■■□□□ 1.66
SF3A1-205ENST00000463818 UBR3Q6ZT12 1888 aa25.43■■□□□ 1.66
SF3A1-205ENST00000463818 ADRA2BP18089 450 aa25.41■■□□□ 1.66
SF3A1-205ENST00000463818 MMP10P09238 476 aa25.4■■□□□ 1.66
SF3A1-205ENST00000463818 RFC4P35249 363 aa25.4■■□□□ 1.66
SF3A1-205ENST00000463818 NLGN1Q8N2Q7 840 aa25.4■■□□□ 1.66
SF3A1-205ENST00000463818 CRKLP46109 303 aaKnown RBP25.39■■□□□ 1.66
SF3A1-205ENST00000463818 SLC39A6Q13433 755 aa25.38■■□□□ 1.65
SF3A1-205ENST00000463818 GYS1P13807 737 aa25.36■■□□□ 1.65
SF3A1-205ENST00000463818 DNAJC10Q8IXB1 793 aa25.35■■□□□ 1.65
SF3A1-205ENST00000463818 CFAP53Q96M91 514 aa25.35■■□□□ 1.65
SF3A1-205ENST00000463818 COL3A1P02461 1466 aaPredicted RBP25.34■■□□□ 1.65
SF3A1-205ENST00000463818 INTS5Q6P9B9 1019 aaKnown RBP25.34■■□□□ 1.65
SF3A1-205ENST00000463818 ZNF831Q5JPB2 1677 aa25.33■■□□□ 1.65
SF3A1-205ENST00000463818 WWC3Q9ULE0 1092 aa25.33■■□□□ 1.65
SF3A1-205ENST00000463818 GAS2L2Q8NHY3 880 aa25.32■■□□□ 1.64
SF3A1-205ENST00000463818 PPP2R1AP30153 589 aa25.31■■□□□ 1.64
SF3A1-205ENST00000463818 IL17REQ8NFR9 667 aa25.31■■□□□ 1.64
SF3A1-205ENST00000463818 SRP68Q9UHB9 627 aaKnown RBP25.31■■□□□ 1.64
SF3A1-205ENST00000463818 CHD4Q14839 1912 aa25.3■■□□□ 1.64
SF3A1-205ENST00000463818 GNAT3A8MTJ3 354 aa25.3■■□□□ 1.64
SF3A1-205ENST00000463818 CYP19A1P11511 503 aaPredicted RBP25.3■■□□□ 1.64
SF3A1-205ENST00000463818 CCDC87Q9NVE4 849 aa25.3■■□□□ 1.64
SF3A1-205ENST00000463818 NUDCQ9Y266 331 aa25.3■■□□□ 1.64
SF3A1-205ENST00000463818 PARP3Q9Y6F1 533 aa25.3■■□□□ 1.64
SF3A1-205ENST00000463818 SCN11AQ9UI33 1791 aa25.29■■□□□ 1.64
SF3A1-205ENST00000463818 PHACTR3Q96KR7 559 aa25.29■■□□□ 1.64
SF3A1-205ENST00000463818 PRKAR2BP31323 418 aa25.28■■□□□ 1.64
SF3A1-205ENST00000463818 TGFB2P61812 414 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 TEFQ10587 303 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 FKBP8Q14318 412 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 VSIG10Q8N0Z9 540 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 RSPH6AQ9H0K4 717 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 MYH14Q7Z406 1995 aaKnown RBP25.27■■□□□ 1.64
SF3A1-205ENST00000463818 MRC1P22897 1456 aa25.27■■□□□ 1.64
SF3A1-205ENST00000463818 TTC5Q8N0Z6 440 aa25.26■■□□□ 1.63
SF3A1-205ENST00000463818 USP42Q9H9J4 1324 aaKnown RBP25.26■■□□□ 1.63
SF3A1-205ENST00000463818 COL5A3P25940 1745 aaPredicted RBP25.26■■□□□ 1.63
SF3A1-205ENST00000463818 A0A0G2JLW4 131 aa25.25■■□□□ 1.63
SF3A1-205ENST00000463818 U2AF1L5P0DN76 240 aaPredicted RBP25.25■■□□□ 1.63
SF3A1-205ENST00000463818 U2AF1Q01081 240 aaKnown RBP eCLIP25.25■■□□□ 1.63
SF3A1-205ENST00000463818 GOLGB1Q14789 3259 aaKnown RBP25.24■■□□□ 1.63
SF3A1-205ENST00000463818 SOS1Q07889 1333 aaPredicted RBP25.24■■□□□ 1.63
SF3A1-205ENST00000463818 ZPR1O75312 459 aa25.24■■□□□ 1.63
SF3A1-205ENST00000463818 USPL1Q5W0Q7 1092 aa25.22■■□□□ 1.63
SF3A1-205ENST00000463818 ZNF790Q6PG37 636 aa25.22■■□□□ 1.63
SF3A1-205ENST00000463818 ZBTB1Q9Y2K1 713 aa25.22■■□□□ 1.63
SF3A1-205ENST00000463818 FCHSD2O94868 740 aa25.21■■□□□ 1.63
SF3A1-205ENST00000463818 DPEP1P16444 411 aa25.21■■□□□ 1.63
SF3A1-205ENST00000463818 TM4SF1P30408 202 aa25.21■■□□□ 1.63
SF3A1-205ENST00000463818 ZNF496Q96IT1 587 aaPredicted RBP25.21■■□□□ 1.63
SF3A1-205ENST00000463818 CICQ96RK0 1608 aaPredicted RBP25.21■■□□□ 1.63
SF3A1-205ENST00000463818 KCPQ6ZWJ8 1503 aa25.21■■□□□ 1.63
SF3A1-205ENST00000463818 TJP1Q07157 1748 aa25.2■■□□□ 1.63
SF3A1-205ENST00000463818 STARD3NLO95772 234 aa25.2■■□□□ 1.62
SF3A1-205ENST00000463818 CANXP27824 592 aaKnown RBP25.2■■□□□ 1.62
SF3A1-205ENST00000463818 DDR1Q08345 913 aa25.2■■□□□ 1.62
SF3A1-205ENST00000463818 NARFQ9UHQ1 456 aa25.19■■□□□ 1.62
SF3A1-205ENST00000463818 PXDNLA1KZ92 1463 aa25.19■■□□□ 1.62
SF3A1-205ENST00000463818 ADAMTS7Q9UKP4 1686 aa25.19■■□□□ 1.62
SF3A1-205ENST00000463818 C10orf71Q711Q0 1435 aa25.19■■□□□ 1.62
SF3A1-205ENST00000463818 BCS1LQ9Y276 419 aa25.18■■□□□ 1.62
SF3A1-205ENST00000463818 POLRMTO00411 1230 aaKnown RBP25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms