RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 SCN11AQ9UI33 1791 aa17.57■□□□□ 0.4
HDAC1-203ENST00000463172 COL3A1P02461 1466 aaPredicted RBP17.56■□□□□ 0.4
HDAC1-203ENST00000463172 KDM6AO15550 1401 aaPredicted RBP17.55■□□□□ 0.4
HDAC1-203ENST00000463172 RBM42Q9BTD8 480 aaKnown RBP17.55■□□□□ 0.4
HDAC1-203ENST00000463172 ZNF831Q5JPB2 1677 aa17.55■□□□□ 0.4
HDAC1-203ENST00000463172 VIRMAQ69YN4 1812 aaKnown RBP17.54■□□□□ 0.4
HDAC1-203ENST00000463172 PPP2R1AP30153 589 aa17.54■□□□□ 0.4
HDAC1-203ENST00000463172 GAS2L2Q8NHY3 880 aa17.54■□□□□ 0.4
HDAC1-203ENST00000463172 SGIP1Q9BQI5 828 aa17.54■□□□□ 0.4
HDAC1-203ENST00000463172 SSFA2P28290 1259 aa17.53■□□□□ 0.4
HDAC1-203ENST00000463172 COL23A1Q86Y22 540 aaPredicted RBP17.53■□□□□ 0.4
HDAC1-203ENST00000463172 NFATC2IPQ8NCF5 419 aa17.53■□□□□ 0.4
HDAC1-203ENST00000463172 COL24A1Q17RW2 1714 aa17.52■□□□□ 0.4
HDAC1-203ENST00000463172 UBR3Q6ZT12 1888 aa17.52■□□□□ 0.4
HDAC1-203ENST00000463172 MTHFSDQ2M296 383 aaKnown RBP17.52■□□□□ 0.4
HDAC1-203ENST00000463172 FHDC1Q9C0D6 1143 aaPredicted RBP17.52■□□□□ 0.4
HDAC1-203ENST00000463172 PHF14O94880 888 aa17.51■□□□□ 0.39
HDAC1-203ENST00000463172 LINC00116Q8NCU8 138 aa17.51■□□□□ 0.39
HDAC1-203ENST00000463172 SLC52A2Q9HAB3 445 aa17.51■□□□□ 0.39
HDAC1-203ENST00000463172 MAP3K5Q99683 1374 aa17.51■□□□□ 0.39
HDAC1-203ENST00000463172 GNPATO15228 680 aa17.5■□□□□ 0.39
HDAC1-203ENST00000463172 RNMTO43148 476 aaKnown RBP17.5■□□□□ 0.39
HDAC1-203ENST00000463172 NEFMP07197 916 aa17.5■□□□□ 0.39
HDAC1-203ENST00000463172 U2AF1L5P0DN76 240 aaPredicted RBP17.5■□□□□ 0.39
HDAC1-203ENST00000463172 U2AF1Q01081 240 aaKnown RBP eCLIP17.5■□□□□ 0.39
HDAC1-203ENST00000463172 SYT17Q9BSW7 474 aa17.5■□□□□ 0.39
HDAC1-203ENST00000463172 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.49■□□□□ 0.39
HDAC1-203ENST00000463172 GNAT3A8MTJ3 354 aa17.49■□□□□ 0.39
HDAC1-203ENST00000463172 ZEB1P37275 1124 aaPredicted RBP17.49■□□□□ 0.39
HDAC1-203ENST00000463172 ITPK1Q13572 414 aa17.49■□□□□ 0.39
HDAC1-203ENST00000463172 KLHL34Q8N239 644 aa17.49■□□□□ 0.39
HDAC1-203ENST00000463172 RTCBQ9Y3I0 505 aaKnown RBP17.49■□□□□ 0.39
HDAC1-203ENST00000463172 PTCD1O75127 700 aaKnown RBP17.48■□□□□ 0.39
HDAC1-203ENST00000463172 RC3H1Q5TC82 1133 aaKnown RBP17.48■□□□□ 0.39
HDAC1-203ENST00000463172 CNTNAP4Q9C0A0 1308 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 FCHSD2O94868 740 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 ADRA2BP18089 450 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 PRKAR2BP31323 418 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 TEFQ10587 303 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 TRAPPC3LQ5T215 181 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 LGR6Q9HBX8 967 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 MRC1P22897 1456 aa17.47■□□□□ 0.39
HDAC1-203ENST00000463172 COL5A3P25940 1745 aaPredicted RBP17.47■□□□□ 0.39
HDAC1-203ENST00000463172 RALBP1Q15311 655 aa17.46■□□□□ 0.39
HDAC1-203ENST00000463172 MSL1Q68DK7 614 aa17.46■□□□□ 0.39
HDAC1-203ENST00000463172 TTC5Q8N0Z6 440 aa17.46■□□□□ 0.39
HDAC1-203ENST00000463172 ADAMTS7Q9UKP4 1686 aa17.45■□□□□ 0.38
HDAC1-203ENST00000463172 RSPH6AQ9H0K4 717 aa17.45■□□□□ 0.38
HDAC1-203ENST00000463172 PNNQ9H307 717 aaKnown RBP17.45■□□□□ 0.38
HDAC1-203ENST00000463172 RTF1Q92541 710 aaKnown RBP17.44■□□□□ 0.38
HDAC1-203ENST00000463172 CICQ96RK0 1608 aaPredicted RBP17.43■□□□□ 0.38
HDAC1-203ENST00000463172 RPS6KA4O75676 772 aa17.43■□□□□ 0.38
HDAC1-203ENST00000463172 RFC4P35249 363 aa17.43■□□□□ 0.38
HDAC1-203ENST00000463172 DDX10Q13206 875 aaKnown RBP17.43■□□□□ 0.38
HDAC1-203ENST00000463172 SLC4A9Q96Q91 983 aa17.43■□□□□ 0.38
HDAC1-203ENST00000463172 VSIG10Q8N0Z9 540 aa17.42■□□□□ 0.38
HDAC1-203ENST00000463172 CRKLP46109 303 aaKnown RBP17.41■□□□□ 0.38
HDAC1-203ENST00000463172 NLGN1Q8N2Q7 840 aa17.41■□□□□ 0.38
HDAC1-203ENST00000463172 TJP1Q07157 1748 aa17.41■□□□□ 0.38
HDAC1-203ENST00000463172 SLC39A6Q13433 755 aa17.4■□□□□ 0.38
HDAC1-203ENST00000463172 GPR162Q16538 588 aa17.4■□□□□ 0.38
HDAC1-203ENST00000463172 PHACTR3Q96KR7 559 aa17.4■□□□□ 0.38
HDAC1-203ENST00000463172 CD2APQ9Y5K6 639 aa17.4■□□□□ 0.38
HDAC1-203ENST00000463172 MYH14Q7Z406 1995 aaKnown RBP17.4■□□□□ 0.38
HDAC1-203ENST00000463172 HTATSF1O43719 755 aaKnown RBP17.39■□□□□ 0.37
HDAC1-203ENST00000463172 AMIGO3Q86WK7 504 aa17.39■□□□□ 0.37
HDAC1-203ENST00000463172 IL17REQ8NFR9 667 aa17.39■□□□□ 0.37
HDAC1-203ENST00000463172 ARHGEF1Q92888 912 aaKnown RBP17.39■□□□□ 0.37
HDAC1-203ENST00000463172 TEX13AQ9BXU3 409 aaPredicted RBP17.39■□□□□ 0.37
HDAC1-203ENST00000463172 UBR2Q8IWV8 1755 aa17.38■□□□□ 0.37
HDAC1-203ENST00000463172 STARD3NLO95772 234 aa17.38■□□□□ 0.37
HDAC1-203ENST00000463172 YY1P25490 414 aa17.38■□□□□ 0.37
HDAC1-203ENST00000463172 CCDC87Q9NVE4 849 aa17.38■□□□□ 0.37
HDAC1-203ENST00000463172 SIPA1L3O60292 1781 aaPredicted RBP17.38■□□□□ 0.37
HDAC1-203ENST00000463172 CHD4Q14839 1912 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 ZNF790Q6PG37 636 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 SMIM5Q71RC9 77 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 DNAJC10Q8IXB1 793 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 PELP1Q8IZL8 1130 aaKnown RBP17.37■□□□□ 0.37
HDAC1-203ENST00000463172 MAPK8IP3Q9UPT6 1336 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 CEMIPQ8WUJ3 1361 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 KCPQ6ZWJ8 1503 aa17.37■□□□□ 0.37
HDAC1-203ENST00000463172 BTBD11A6QL63 1104 aa17.36■□□□□ 0.37
HDAC1-203ENST00000463172 FMNL2Q96PY5 1086 aa17.36■□□□□ 0.37
HDAC1-203ENST00000463172 MYBBP1AQ9BQG0 1328 aaKnown RBP17.36■□□□□ 0.37
HDAC1-203ENST00000463172 ZPR1O75312 459 aa17.35■□□□□ 0.37
HDAC1-203ENST00000463172 MMP10P09238 476 aa17.35■□□□□ 0.37
HDAC1-203ENST00000463172 CYP19A1P11511 503 aaPredicted RBP17.35■□□□□ 0.37
HDAC1-203ENST00000463172 NPM2Q86SE8 214 aaKnown RBP17.35■□□□□ 0.37
HDAC1-203ENST00000463172 C4AP0C0L4 1744 aa17.35■□□□□ 0.37
HDAC1-203ENST00000463172 GRIN3BO60391 1043 aa17.34■□□□□ 0.37
HDAC1-203ENST00000463172 INTS5Q6P9B9 1019 aaKnown RBP17.34■□□□□ 0.37
HDAC1-203ENST00000463172 NLGN2Q8NFZ4 835 aa17.34■□□□□ 0.37
HDAC1-203ENST00000463172 PARP3Q9Y6F1 533 aa17.34■□□□□ 0.37
HDAC1-203ENST00000463172 HEG1Q9ULI3 1381 aa17.33■□□□□ 0.36
HDAC1-203ENST00000463172 GYS1P13807 737 aa17.33■□□□□ 0.36
HDAC1-203ENST00000463172 USP42Q9H9J4 1324 aaKnown RBP17.32■□□□□ 0.36
HDAC1-203ENST00000463172 A0A087WZG4 1122 aa17.32■□□□□ 0.36
HDAC1-203ENST00000463172 MCM10Q7L590 875 aa17.32■□□□□ 0.36
HDAC1-203ENST00000463172 DLG5Q8TDM6 1919 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms