RNA–Protein interactions for RNA: ENST00000463005.1

GARNL3-212, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 887 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-212ENST00000463005 ZNF827Q17R98 1081 aa11.34□□□□□ -0.59
GARNL3-212ENST00000463005 GRIN3BO60391 1043 aa11.33□□□□□ -0.6
GARNL3-212ENST00000463005 HMGB2P26583 209 aaKnown RBP11.33□□□□□ -0.6
GARNL3-212ENST00000463005 ATN1P54259 1190 aaPredicted RBP11.33□□□□□ -0.6
GARNL3-212ENST00000463005 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
GARNL3-212ENST00000463005 L3MBTL2Q969R5 705 aa11.33□□□□□ -0.6
GARNL3-212ENST00000463005 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.32□□□□□ -0.6
GARNL3-212ENST00000463005 PELP1Q8IZL8 1130 aaKnown RBP11.31□□□□□ -0.6
GARNL3-212ENST00000463005 TFCP2L1Q9NZI6 479 aa11.31□□□□□ -0.6
GARNL3-212ENST00000463005 PNPLA7Q6ZV29 1317 aa11.31□□□□□ -0.6
GARNL3-212ENST00000463005 ROCK2O75116 1388 aaKnown RBP11.3□□□□□ -0.6
GARNL3-212ENST00000463005 LY75O60449 1722 aa11.3□□□□□ -0.6
GARNL3-212ENST00000463005 E2F4Q16254 413 aa11.3□□□□□ -0.6
GARNL3-212ENST00000463005 HDGFL2Q7Z4V5 671 aaPredicted RBP11.3□□□□□ -0.6
GARNL3-212ENST00000463005 DDX54Q8TDD1 881 aaKnown RBP11.3□□□□□ -0.6
GARNL3-212ENST00000463005 FAM208AQ9UK61 1670 aaKnown RBP11.3□□□□□ -0.6
GARNL3-212ENST00000463005 UTRNP46939 3433 aa11.29□□□□□ -0.6
GARNL3-212ENST00000463005 NME9Q86XW9 330 aa11.29□□□□□ -0.6
GARNL3-212ENST00000463005 IP6K1Q92551 441 aa11.29□□□□□ -0.6
GARNL3-212ENST00000463005 CRISPLD2Q9H0B8 497 aa11.29□□□□□ -0.6
GARNL3-212ENST00000463005 TUBGCP6Q96RT7 1819 aa11.29□□□□□ -0.6
GARNL3-212ENST00000463005 SBNO2Q9Y2G9 1366 aa11.28□□□□□ -0.6
GARNL3-212ENST00000463005 PRIM1P49642 420 aaKnown RBP11.28□□□□□ -0.6
GARNL3-212ENST00000463005 PUS7Q96PZ0 661 aaKnown RBP11.28□□□□□ -0.6
GARNL3-212ENST00000463005 TERF2IPQ9NYB0 399 aa11.28□□□□□ -0.6
GARNL3-212ENST00000463005 ANKRD36BQ8N2N9 1353 aa11.28□□□□□ -0.6
GARNL3-212ENST00000463005 SHANK3Q9BYB0 1731 aa11.27□□□□□ -0.61
GARNL3-212ENST00000463005 ATMINO43313 823 aaPredicted RBP11.27□□□□□ -0.61
GARNL3-212ENST00000463005 NLGN2Q8NFZ4 835 aa11.27□□□□□ -0.61
GARNL3-212ENST00000463005 TMC1Q8TDI8 760 aa11.27□□□□□ -0.61
GARNL3-212ENST00000463005 SYTL4Q96C24 671 aaPredicted RBP11.27□□□□□ -0.61
GARNL3-212ENST00000463005 EDC4Q6P2E9 1401 aaKnown RBP11.26□□□□□ -0.61
GARNL3-212ENST00000463005 PDE4AP27815 886 aa11.26□□□□□ -0.61
GARNL3-212ENST00000463005 ZCRB1Q8TBF4 217 aaKnown RBP11.26□□□□□ -0.61
GARNL3-212ENST00000463005 SLC12A5Q9H2X9 1139 aa11.26□□□□□ -0.61
GARNL3-212ENST00000463005 CD163L1Q9NR16 1453 aa11.25□□□□□ -0.61
GARNL3-212ENST00000463005 SEMA3EO15041 775 aa11.25□□□□□ -0.61
GARNL3-212ENST00000463005 YBX3P16989 372 aaKnown RBP eCLIP11.25□□□□□ -0.61
GARNL3-212ENST00000463005 COL23A1Q86Y22 540 aaPredicted RBP11.25□□□□□ -0.61
GARNL3-212ENST00000463005 PDCD7Q8N8D1 485 aaKnown RBP11.25□□□□□ -0.61
GARNL3-212ENST00000463005 FLAD1Q8NFF5 587 aa11.25□□□□□ -0.61
GARNL3-212ENST00000463005 CCNL1Q9UK58 526 aaPredicted RBP11.25□□□□□ -0.61
GARNL3-212ENST00000463005 CD2APQ9Y5K6 639 aa11.25□□□□□ -0.61
GARNL3-212ENST00000463005 DOT1LQ8TEK3 1739 aa11.24□□□□□ -0.61
GARNL3-212ENST00000463005 KCNQ4P56696 695 aa11.24□□□□□ -0.61
GARNL3-212ENST00000463005 MFSD10Q14728 455 aa11.24□□□□□ -0.61
GARNL3-212ENST00000463005 LTV1Q96GA3 475 aaPredicted RBP11.24□□□□□ -0.61
GARNL3-212ENST00000463005 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
GARNL3-212ENST00000463005 SIN3AQ96ST3 1273 aa11.24□□□□□ -0.61
GARNL3-212ENST00000463005 GPBP1L1Q9HC44 474 aaPredicted RBP11.23□□□□□ -0.61
GARNL3-212ENST00000463005 CGNL1Q0VF96 1302 aa11.23□□□□□ -0.61
GARNL3-212ENST00000463005 USP47Q96K76 1375 aa11.23□□□□□ -0.61
GARNL3-212ENST00000463005 RGPD2P0DJD1 1756 aa11.23□□□□□ -0.61
GARNL3-212ENST00000463005 NSD2O96028 1365 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 HOXC9P31274 260 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 AMPHP49418 695 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 NEUROD1Q13562 356 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 ARHGEF1Q92888 912 aaKnown RBP11.22□□□□□ -0.61
GARNL3-212ENST00000463005 COG3Q96JB2 828 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 CARD11Q9BXL7 1154 aa11.22□□□□□ -0.61
GARNL3-212ENST00000463005 TAF1LQ8IZX4 1826 aa11.21□□□□□ -0.61
GARNL3-212ENST00000463005 ATP10DQ9P241 1426 aa11.21□□□□□ -0.61
GARNL3-212ENST00000463005 GABBR2O75899 941 aa11.21□□□□□ -0.61
GARNL3-212ENST00000463005 HSPA6P17066 643 aa11.21□□□□□ -0.61
GARNL3-212ENST00000463005 MICALL2Q8IY33 904 aa11.21□□□□□ -0.61
GARNL3-212ENST00000463005 A0A1W2PP64 1363 aa11.2□□□□□ -0.62
GARNL3-212ENST00000463005 MAP3K19Q56UN5 1328 aa11.2□□□□□ -0.62
GARNL3-212ENST00000463005 IRX5P78411 483 aaPredicted RBP11.2□□□□□ -0.62
GARNL3-212ENST00000463005 ASTLQ6HA08 431 aaPredicted RBP11.2□□□□□ -0.62
GARNL3-212ENST00000463005 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.2□□□□□ -0.62
GARNL3-212ENST00000463005 C5P01031 1676 aa11.2□□□□□ -0.62
GARNL3-212ENST00000463005 RAPGEF4Q8WZA2 1011 aa11.19□□□□□ -0.62
GARNL3-212ENST00000463005 TATP17735 454 aaPredicted RBP11.18□□□□□ -0.62
GARNL3-212ENST00000463005 MSL1Q68DK7 614 aa11.18□□□□□ -0.62
GARNL3-212ENST00000463005 SMARCC1Q92922 1105 aaPredicted RBP11.18□□□□□ -0.62
GARNL3-212ENST00000463005 ADCY9O60503 1353 aa11.17□□□□□ -0.62
GARNL3-212ENST00000463005 PPP1R15BQ5SWA1 713 aa11.17□□□□□ -0.62
GARNL3-212ENST00000463005 NBPF6Q5VWK0 638 aa11.17□□□□□ -0.62
GARNL3-212ENST00000463005 NBPF4Q96M43 638 aa11.17□□□□□ -0.62
GARNL3-212ENST00000463005 RTL1A6NKG5 1358 aa11.16□□□□□ -0.62
GARNL3-212ENST00000463005 ITGB4P16144 1822 aa11.16□□□□□ -0.62
GARNL3-212ENST00000463005 MEGF6O75095 1541 aa11.16□□□□□ -0.62
GARNL3-212ENST00000463005 NSD3Q9BZ95 1437 aa11.16□□□□□ -0.62
GARNL3-212ENST00000463005 PCDH11XQ9BZA7 1347 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 PCDH11YQ9BZA8 1340 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 FBLN1P23142 703 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 DSG2Q14126 1118 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 MPRIPQ6WCQ1 1025 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 AK7Q96M32 723 aa11.15□□□□□ -0.62
GARNL3-212ENST00000463005 GPHNQ9NQX3 736 aaPredicted RBP11.15□□□□□ -0.62
GARNL3-212ENST00000463005 SMG6Q86US8 1419 aaKnown RBP11.15□□□□□ -0.62
GARNL3-212ENST00000463005 C4BP0C0L5 1744 aa11.15□□□□□ -0.63
GARNL3-212ENST00000463005 PALLDQ8WX93 1383 aa11.15□□□□□ -0.63
GARNL3-212ENST00000463005 UBR3Q6ZT12 1888 aa11.15□□□□□ -0.63
GARNL3-212ENST00000463005 ZNF526Q8TF50 670 aaPredicted RBP11.14□□□□□ -0.63
GARNL3-212ENST00000463005 OCEL1Q9H607 264 aa11.14□□□□□ -0.63
GARNL3-212ENST00000463005 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
GARNL3-212ENST00000463005 GOLGB1Q14789 3259 aaKnown RBP11.13□□□□□ -0.63
GARNL3-212ENST00000463005 IGSF1Q8N6C5 1336 aa11.13□□□□□ -0.63
GARNL3-212ENST00000463005 TESPA1A2RU30 521 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms