RNA–Protein interactions for RNA: ENST00000461873.5

LDB1-203, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 478 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-203ENST00000461873 GNPATO15228 680 aa11.93□□□□□ -0.5
LDB1-203ENST00000461873 MSL1Q68DK7 614 aa11.93□□□□□ -0.5
LDB1-203ENST00000461873 ASAP1Q9ULH1 1129 aa11.93□□□□□ -0.5
LDB1-203ENST00000461873 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.92□□□□□ -0.5
LDB1-203ENST00000461873 SSFA2P28290 1259 aa11.92□□□□□ -0.5
LDB1-203ENST00000461873 IL13P35225 146 aa11.92□□□□□ -0.5
LDB1-203ENST00000461873 AKAP4Q5JQC9 854 aa11.92□□□□□ -0.5
LDB1-203ENST00000461873 SGIP1Q9BQI5 828 aa11.92□□□□□ -0.5
LDB1-203ENST00000461873 NUDCQ9Y266 331 aa11.92□□□□□ -0.5
LDB1-203ENST00000461873 RTCBQ9Y3I0 505 aaKnown RBP11.92□□□□□ -0.5
LDB1-203ENST00000461873 HMOX1P09601 288 aa11.91□□□□□ -0.5
LDB1-203ENST00000461873 TRAPPC3LQ5T215 181 aa11.91□□□□□ -0.5
LDB1-203ENST00000461873 AEBP1Q8IUX7 1158 aa11.91□□□□□ -0.5
LDB1-203ENST00000461873 ATG3Q9NT62 314 aa11.91□□□□□ -0.5
LDB1-203ENST00000461873 TAF1LQ8IZX4 1826 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 TUBGCP6Q96RT7 1819 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 NEFMP07197 916 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 C4BP0C0L5 1744 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 RFC4P35249 363 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 NFATC2IPQ8NCF5 419 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 TOGARAM1Q9Y4F4 1720 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 MAP3K5Q99683 1374 aa11.9□□□□□ -0.5
LDB1-203ENST00000461873 GRIN3BO60391 1043 aa11.89□□□□□ -0.51
LDB1-203ENST00000461873 PTCD1O75127 700 aaKnown RBP11.89□□□□□ -0.51
LDB1-203ENST00000461873 LINC00116Q8NCU8 138 aa11.89□□□□□ -0.51
LDB1-203ENST00000461873 PER1O15534 1290 aaPredicted RBP11.88□□□□□ -0.51
LDB1-203ENST00000461873 NPM2Q86SE8 214 aaKnown RBP11.88□□□□□ -0.51
LDB1-203ENST00000461873 CD2APQ9Y5K6 639 aa11.88□□□□□ -0.51
LDB1-203ENST00000461873 TTC5Q8N0Z6 440 aa11.87□□□□□ -0.51
LDB1-203ENST00000461873 NLGN1Q8N2Q7 840 aa11.87□□□□□ -0.51
LDB1-203ENST00000461873 GAS2L2Q8NHY3 880 aa11.87□□□□□ -0.51
LDB1-203ENST00000461873 CHD4Q14839 1912 aa11.87□□□□□ -0.51
LDB1-203ENST00000461873 NPC1L1Q9UHC9 1359 aa11.87□□□□□ -0.51
LDB1-203ENST00000461873 TEFQ10587 303 aa11.86□□□□□ -0.51
LDB1-203ENST00000461873 ITPK1Q13572 414 aa11.86□□□□□ -0.51
LDB1-203ENST00000461873 RC3H1Q5TC82 1133 aaKnown RBP11.86□□□□□ -0.51
LDB1-203ENST00000461873 KDRP35968 1356 aa11.86□□□□□ -0.51
LDB1-203ENST00000461873 CNKSR2Q8WXI2 1034 aa11.85□□□□□ -0.51
LDB1-203ENST00000461873 RTF1Q92541 710 aaKnown RBP11.85□□□□□ -0.51
LDB1-203ENST00000461873 SLC52A2Q9HAB3 445 aa11.85□□□□□ -0.51
LDB1-203ENST00000461873 PARP3Q9Y6F1 533 aa11.85□□□□□ -0.51
LDB1-203ENST00000461873 UBR3Q6ZT12 1888 aa11.85□□□□□ -0.51
LDB1-203ENST00000461873 CNTNAP4Q9C0A0 1308 aa11.85□□□□□ -0.51
LDB1-203ENST00000461873 GNAT3A8MTJ3 354 aa11.84□□□□□ -0.51
LDB1-203ENST00000461873 RNMTO43148 476 aaKnown RBP11.84□□□□□ -0.51
LDB1-203ENST00000461873 ZPR1O75312 459 aa11.84□□□□□ -0.51
LDB1-203ENST00000461873 RPS6KA4O75676 772 aa11.84□□□□□ -0.51
LDB1-203ENST00000461873 MTHFSDQ2M296 383 aaKnown RBP11.84□□□□□ -0.51
LDB1-203ENST00000461873 NLGN2Q8NFZ4 835 aa11.84□□□□□ -0.51
LDB1-203ENST00000461873 KDM6AO15550 1401 aaPredicted RBP11.84□□□□□ -0.51
LDB1-203ENST00000461873 MMP10P09238 476 aa11.83□□□□□ -0.52
LDB1-203ENST00000461873 U2AF1L5P0DN76 240 aaPredicted RBP11.83□□□□□ -0.52
LDB1-203ENST00000461873 U2AF1Q01081 240 aaKnown RBP eCLIP11.83□□□□□ -0.52
LDB1-203ENST00000461873 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
LDB1-203ENST00000461873 CCDC87Q9NVE4 849 aa11.83□□□□□ -0.52
LDB1-203ENST00000461873 SCN11AQ9UI33 1791 aa11.82□□□□□ -0.52
LDB1-203ENST00000461873 CRKLP46109 303 aaKnown RBP11.82□□□□□ -0.52
LDB1-203ENST00000461873 SMIM5Q71RC9 77 aa11.82□□□□□ -0.52
LDB1-203ENST00000461873 LGR6Q9HBX8 967 aa11.82□□□□□ -0.52
LDB1-203ENST00000461873 COL24A1Q17RW2 1714 aa11.81□□□□□ -0.52
LDB1-203ENST00000461873 STARD3NLO95772 234 aa11.81□□□□□ -0.52
LDB1-203ENST00000461873 PNNQ9H307 717 aaKnown RBP11.81□□□□□ -0.52
LDB1-203ENST00000461873 PRKAR2BP31323 418 aa11.8□□□□□ -0.52
LDB1-203ENST00000461873 SLC39A6Q13433 755 aa11.8□□□□□ -0.52
LDB1-203ENST00000461873 ZNF784Q8NCA9 323 aaPredicted RBP11.8□□□□□ -0.52
LDB1-203ENST00000461873 TEX13AQ9BXU3 409 aaPredicted RBP11.8□□□□□ -0.52
LDB1-203ENST00000461873 ZNF831Q5JPB2 1677 aa11.8□□□□□ -0.52
LDB1-203ENST00000461873 UTRNP46939 3433 aa11.8□□□□□ -0.52
LDB1-203ENST00000461873 VIRMAQ69YN4 1812 aaKnown RBP11.79□□□□□ -0.52
LDB1-203ENST00000461873 PPP2R1AP30153 589 aa11.79□□□□□ -0.52
LDB1-203ENST00000461873 TGFB2P61812 414 aa11.79□□□□□ -0.52
LDB1-203ENST00000461873 VSIG10Q8N0Z9 540 aa11.79□□□□□ -0.52
LDB1-203ENST00000461873 WWC3Q9ULE0 1092 aa11.79□□□□□ -0.52
LDB1-203ENST00000461873 ZNF330Q9Y3S2 320 aaPredicted RBP11.79□□□□□ -0.52
LDB1-203ENST00000461873 A0A087WZG4 1122 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 NPHP1O15259 732 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 FCHSD2O94868 740 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 AMIGO3Q86WK7 504 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 DNAJC10Q8IXB1 793 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 SLC4A9Q96Q91 983 aa11.78□□□□□ -0.52
LDB1-203ENST00000461873 BTBD11A6QL63 1104 aa11.77□□□□□ -0.53
LDB1-203ENST00000461873 GIGYF1O75420 1035 aaPredicted RBP11.77□□□□□ -0.53
LDB1-203ENST00000461873 GYS1P13807 737 aa11.77□□□□□ -0.53
LDB1-203ENST00000461873 CANXP27824 592 aaKnown RBP11.77□□□□□ -0.53
LDB1-203ENST00000461873 FMNL2Q96PY5 1086 aa11.77□□□□□ -0.53
LDB1-203ENST00000461873 COL5A3P25940 1745 aaPredicted RBP11.77□□□□□ -0.53
LDB1-203ENST00000461873 YBX3P16989 372 aaKnown RBP eCLIP11.76□□□□□ -0.53
LDB1-203ENST00000461873 ZNF790Q6PG37 636 aa11.76□□□□□ -0.53
LDB1-203ENST00000461873 BCS1LQ9Y276 419 aa11.76□□□□□ -0.53
LDB1-203ENST00000461873 MAPK8IP3Q9UPT6 1336 aa11.76□□□□□ -0.53
LDB1-203ENST00000461873 GOLGB1Q14789 3259 aaKnown RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 CYP19A1P11511 503 aaPredicted RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 USPL1Q5W0Q7 1092 aa11.75□□□□□ -0.53
LDB1-203ENST00000461873 INTS5Q6P9B9 1019 aaKnown RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 SRP68Q9UHB9 627 aaKnown RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 USP42Q9H9J4 1324 aaKnown RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 CICQ96RK0 1608 aaPredicted RBP11.75□□□□□ -0.53
LDB1-203ENST00000461873 A0A0G2JLW4 131 aa11.74□□□□□ -0.53
LDB1-203ENST00000461873 IL17REQ8NFR9 667 aa11.74□□□□□ -0.53
LDB1-203ENST00000461873 RSPH6AQ9H0K4 717 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms