RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 NFAT5O94916 1531 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 USP19O94966 1318 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 FRAT2O75474 233 aaPredicted RBP10.59□□□□□ -0.71
HDAC9-219ENST00000461159 CCDC27Q2M243 656 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 CFAP44Q96MT7 982 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 BCL2L13Q9BXK5 485 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 UBAP1LF5GYI3 381 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 NFE2L2Q16236 605 aa10.59□□□□□ -0.71
HDAC9-219ENST00000461159 MTHFSDQ2M296 383 aaKnown RBP10.59□□□□□ -0.71
HDAC9-219ENST00000461159 ELL2O00472 640 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-219ENST00000461159 CSB-PGBD3P0DP91 1061 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 PRDM11Q9NQV5 511 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 RGPD1P0DJD0 1748 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 DLG5Q8TDM6 1919 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 WDR63Q8IWG1 891 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 PSMD1Q99460 953 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 NLRP2Q9NX02 1062 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 MIS18AQ9NYP9 233 aa10.58□□□□□ -0.72
HDAC9-219ENST00000461159 IGSF1Q8N6C5 1336 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 USP54Q70EL1 1684 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 APPP05067 770 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 SETQ01105 290 aaPredicted RBP10.57□□□□□ -0.72
HDAC9-219ENST00000461159 BECN1Q14457 450 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 ALS2Q96Q42 1657 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 SLC20A2Q08357 652 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 STRN4Q9NRL3 753 aa10.57□□□□□ -0.72
HDAC9-219ENST00000461159 RGPD5Q99666 1765 aa10.56□□□□□ -0.72
HDAC9-219ENST00000461159 RGPD2P0DJD1 1756 aa10.56□□□□□ -0.72
HDAC9-219ENST00000461159 ERBB3P21860 1342 aa10.55□□□□□ -0.72
HDAC9-219ENST00000461159 NUTM2BA6NNL0 878 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-219ENST00000461159 NUTM2EB1AL46 878 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-219ENST00000461159 ADAMTS2O95450 1211 aa10.55□□□□□ -0.72
HDAC9-219ENST00000461159 NUTM2AQ8IVF1 878 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-219ENST00000461159 EXOSC9Q06265 439 aaKnown RBP10.55□□□□□ -0.72
HDAC9-219ENST00000461159 MTERF4Q7Z6M4 381 aaKnown RBP10.55□□□□□ -0.72
HDAC9-219ENST00000461159 TNNQ9UQP3 1299 aa10.55□□□□□ -0.72
HDAC9-219ENST00000461159 ARHGEF10O15013 1369 aa10.55□□□□□ -0.72
HDAC9-219ENST00000461159 ROBO1Q9Y6N7 1651 aa10.55□□□□□ -0.72
HDAC9-219ENST00000461159 TOM1O60784 492 aa10.54□□□□□ -0.72
HDAC9-219ENST00000461159 KRT24Q2M2I5 525 aa10.54□□□□□ -0.72
HDAC9-219ENST00000461159 SLIT3O75094 1523 aa10.54□□□□□ -0.72
HDAC9-219ENST00000461159 TRIM44Q96DX7 344 aaPredicted RBP10.54□□□□□ -0.72
HDAC9-219ENST00000461159 VIRMAQ69YN4 1812 aaKnown RBP10.53□□□□□ -0.72
HDAC9-219ENST00000461159 KDRP35968 1356 aa10.53□□□□□ -0.72
HDAC9-219ENST00000461159 MYCNP04198 464 aaPredicted RBP10.53□□□□□ -0.72
HDAC9-219ENST00000461159 PLCB2Q00722 1185 aa10.53□□□□□ -0.72
HDAC9-219ENST00000461159 PDE3AQ14432 1141 aa10.53□□□□□ -0.72
HDAC9-219ENST00000461159 DNTTIP2Q5QJE6 756 aaKnown RBP10.53□□□□□ -0.72
HDAC9-219ENST00000461159 RTL1A6NKG5 1358 aa10.52□□□□□ -0.72
HDAC9-219ENST00000461159 RARSP54136 660 aaKnown RBP10.52□□□□□ -0.73
HDAC9-219ENST00000461159 L1TD1Q5T7N2 865 aaKnown RBP10.52□□□□□ -0.73
HDAC9-219ENST00000461159 TSPYL6Q8N831 410 aa10.52□□□□□ -0.73
HDAC9-219ENST00000461159 LETM1O95202 739 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-219ENST00000461159 MPRIPQ6WCQ1 1025 aa10.52□□□□□ -0.73
HDAC9-219ENST00000461159 TOM1L2Q6ZVM7 507 aa10.52□□□□□ -0.73
HDAC9-219ENST00000461159 RTF1Q92541 710 aaKnown RBP10.52□□□□□ -0.73
HDAC9-219ENST00000461159 GTPBP4Q9BZE4 634 aaKnown RBP10.52□□□□□ -0.73
HDAC9-219ENST00000461159 MYH16Q9H6N6 1097 aa10.52□□□□□ -0.73
HDAC9-219ENST00000461159 MBIPQ9NS73 344 aa10.52□□□□□ -0.73
HDAC9-219ENST00000461159 KIF24Q5T7B8 1368 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 EP400Q96L91 3159 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 CEP120Q8N960 986 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 UPF2Q9HAU5 1272 aaKnown RBP10.51□□□□□ -0.73
HDAC9-219ENST00000461159 LGR6Q9HBX8 967 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 BTG4Q9NY30 223 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 EVA1CP58658 441 aa10.51□□□□□ -0.73
HDAC9-219ENST00000461159 LARP1Q6PKG0 1096 aaKnown RBP10.51□□□□□ -0.73
HDAC9-219ENST00000461159 IL17REQ8NFR9 667 aa10.5□□□□□ -0.73
HDAC9-219ENST00000461159 PHRF1Q9P1Y6 1649 aaKnown RBP10.5□□□□□ -0.73
HDAC9-219ENST00000461159 ZNF853P0CG23 659 aa10.5□□□□□ -0.73
HDAC9-219ENST00000461159 TERF1P54274 439 aa10.5□□□□□ -0.73
HDAC9-219ENST00000461159 ZNF530Q6P9A1 599 aaPredicted RBP10.5□□□□□ -0.73
HDAC9-219ENST00000461159 CLUAP1Q96AJ1 413 aa10.5□□□□□ -0.73
HDAC9-219ENST00000461159 YY1AP1Q9H869 796 aa10.5□□□□□ -0.73
HDAC9-219ENST00000461159 GNAT3A8MTJ3 354 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 IGHDP01880 384 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 C8orf58Q8NAV2 365 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 GAS2L2Q8NHY3 880 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 PANK1Q8TE04 598 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 CAMTA1Q9Y6Y1 1673 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 GOLGA6L3A6NEY3 463 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 SSH1Q8WYL5 1049 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 RAPGEF4Q8WZA2 1011 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 IL16Q14005 1332 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 NHSL1Q5SYE7 1610 aa10.49□□□□□ -0.73
HDAC9-219ENST00000461159 RLBP1P12271 317 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 CERKQ8TCT0 537 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 DNAJC2Q99543 621 aaKnown RBP10.48□□□□□ -0.73
HDAC9-219ENST00000461159 KAT6BQ8WYB5 2073 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 LMOD3Q0VAK6 560 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 NECTIN2Q92692 538 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 CARD10Q9BWT7 1032 aa10.48□□□□□ -0.73
HDAC9-219ENST00000461159 GNAI1P63096 354 aa10.47□□□□□ -0.73
HDAC9-219ENST00000461159 CRYBG1Q9Y4K1 1723 aa10.47□□□□□ -0.73
HDAC9-219ENST00000461159 CPDO75976 1380 aa10.47□□□□□ -0.73
HDAC9-219ENST00000461159 SLKQ9H2G2 1235 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-219ENST00000461159 GEMIN8Q9NWZ8 242 aaKnown RBP10.47□□□□□ -0.73
HDAC9-219ENST00000461159 TSPYL4Q9UJ04 414 aa10.47□□□□□ -0.73
HDAC9-219ENST00000461159 COL18A1P39060 1754 aa10.46□□□□□ -0.73
HDAC9-219ENST00000461159 ZSCAN20P17040 1043 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms