RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 DLG5Q8TDM6 1919 aa13.42□□□□□ -0.26
USP39-210ENST00000459775 FAM98CQ17RN3 349 aaKnown RBP13.42□□□□□ -0.26
USP39-210ENST00000459775 TRMT2AQ8IZ69 625 aaKnown RBP13.42□□□□□ -0.26
USP39-210ENST00000459775 RTF1Q92541 710 aaKnown RBP13.42□□□□□ -0.26
USP39-210ENST00000459775 MAP3K5Q99683 1374 aa13.41□□□□□ -0.26
USP39-210ENST00000459775 EN1Q05925 392 aaPredicted RBP13.41□□□□□ -0.26
USP39-210ENST00000459775 PDE3BQ13370 1112 aa13.41□□□□□ -0.26
USP39-210ENST00000459775 AMOTQ4VCS5 1084 aa13.41□□□□□ -0.26
USP39-210ENST00000459775 ZCRB1Q8TBF4 217 aaKnown RBP13.41□□□□□ -0.26
USP39-210ENST00000459775 RREB1Q92766 1687 aa13.41□□□□□ -0.26
USP39-210ENST00000459775 OVOS2A0A0G2JMS6 1433 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 DCAF8L1A6NGE4 600 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 E9PSI1 815 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 PHKG2P15735 406 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 R3HDM1Q15032 1099 aaKnown RBP13.4□□□□□ -0.26
USP39-210ENST00000459775 C1orf141Q5JVX7 400 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 NGEFQ8N5V2 710 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 SPG7Q9UQ90 795 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 KRT24Q2M2I5 525 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 AKAP4Q5JQC9 854 aa13.4□□□□□ -0.26
USP39-210ENST00000459775 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
USP39-210ENST00000459775 FAM196AQ6ZSG2 479 aa13.39□□□□□ -0.27
USP39-210ENST00000459775 MBIPQ9NS73 344 aa13.39□□□□□ -0.27
USP39-210ENST00000459775 ELL2O00472 640 aaPredicted RBP13.39□□□□□ -0.27
USP39-210ENST00000459775 YY1P25490 414 aa13.39□□□□□ -0.27
USP39-210ENST00000459775 LMOD3Q0VAK6 560 aa13.39□□□□□ -0.27
USP39-210ENST00000459775 SUPT16HQ9Y5B9 1047 aaKnown RBP13.39□□□□□ -0.27
USP39-210ENST00000459775 RNMTO43148 476 aaKnown RBP13.38□□□□□ -0.27
USP39-210ENST00000459775 EXOSC9Q06265 439 aaKnown RBP13.38□□□□□ -0.27
USP39-210ENST00000459775 ERICH6BQ5W0A0 696 aa13.38□□□□□ -0.27
USP39-210ENST00000459775 KCNQ3O43525 872 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 ZNF853P0CG23 659 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 AAMPQ13685 434 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 IFNL2Q8IZJ0 200 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 KDM6AO15550 1401 aaPredicted RBP13.37□□□□□ -0.27
USP39-210ENST00000459775 FAM182BQ5T319 152 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 NBPF14Q5TI25 921 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 TSPYL6Q8N831 410 aa13.37□□□□□ -0.27
USP39-210ENST00000459775 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.279e-7■□□□□ 10
USP39-210ENST00000459775 NUP188Q5SRE5 1749 aa13.36□□□□□ -0.27
USP39-210ENST00000459775 CFAP44Q96MT7 982 aa13.36□□□□□ -0.27
USP39-210ENST00000459775 CAMKK2Q96RR4 588 aa13.36□□□□□ -0.27
USP39-210ENST00000459775 IRX6P78412 446 aaPredicted RBP13.36□□□□□ -0.27
USP39-210ENST00000459775 EXOC5O00471 708 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 CHL1O00533 1208 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 TCERG1O14776 1098 aaKnown RBP13.35□□□□□ -0.27
USP39-210ENST00000459775 EZH2Q15910 746 aaKnown RBP13.35□□□□□ -0.27
USP39-210ENST00000459775 C8orf58Q8NAV2 365 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 NFATC2IPQ8NCF5 419 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 MYH16Q9H6N6 1097 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 IFT57Q9NWB7 429 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 IL16Q14005 1332 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 CEMIPQ8WUJ3 1361 aa13.35□□□□□ -0.27
USP39-210ENST00000459775 HTATSF1O43719 755 aaKnown RBP13.34□□□□□ -0.27
USP39-210ENST00000459775 GNAI1P63096 354 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 BCL2L13Q9BXK5 485 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 TSPYL4Q9UJ04 414 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 RGPD3A6NKT7 1758 aaPredicted RBP13.34□□□□□ -0.27
USP39-210ENST00000459775 RGPD4Q7Z3J3 1758 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 PCDH11XQ9BZA7 1347 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 PCDH11YQ9BZA8 1340 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 SLC39A6Q13433 755 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 DDB1Q16531 1140 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 RCAN3Q9UKA8 241 aa13.34□□□□□ -0.27
USP39-210ENST00000459775 TEFQ10587 303 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 TAF7Q15545 349 aaPredicted RBP13.33□□□□□ -0.28
USP39-210ENST00000459775 BARGINQ6ZT62 677 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 MARCH10Q8NA82 808 aaPredicted RBP13.33□□□□□ -0.28
USP39-210ENST00000459775 THRAP3Q9Y2W1 955 aaKnown RBP13.33□□□□□ -0.28
USP39-210ENST00000459775 PKD1L3Q7Z443 1732 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 PLIN1O60240 522 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 BCAR3O75815 825 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 CALD1Q05682 793 aaKnown RBP13.33□□□□□ -0.28
USP39-210ENST00000459775 DCAF5Q96JK2 942 aa13.33□□□□□ -0.28
USP39-210ENST00000459775 SPON1Q9HCB6 807 aa13.32□□□□□ -0.28
USP39-210ENST00000459775 SRCAPQ6ZRS2 3230 aa13.32□□□□□ -0.28
USP39-210ENST00000459775 PARP4Q9UKK3 1724 aaKnown RBP13.32□□□□□ -0.28
USP39-210ENST00000459775 APBA3O96018 575 aa13.31□□□□□ -0.28
USP39-210ENST00000459775 SHANK3Q9BYB0 1731 aa13.31□□□□□ -0.28
USP39-210ENST00000459775 BTBD11A6QL63 1104 aa13.31□□□□□ -0.28
USP39-210ENST00000459775 ACSBG1Q96GR2 724 aa13.31□□□□□ -0.28
USP39-210ENST00000459775 SLC52A2Q9HAB3 445 aa13.31□□□□□ -0.28
USP39-210ENST00000459775 PPP1R1BQ9UD71 204 aaPredicted RBP13.31□□□□□ -0.28
USP39-210ENST00000459775 CABP4P57796 275 aa13.3□□□□□ -0.28
USP39-210ENST00000459775 NKX1-1Q15270 411 aaPredicted RBP13.3□□□□□ -0.28
USP39-210ENST00000459775 NECTIN2Q92692 538 aa13.3□□□□□ -0.28
USP39-210ENST00000459775 SYTL4Q96C24 671 aaPredicted RBP13.3□□□□□ -0.28
USP39-210ENST00000459775 PRAMEF22A3QJZ6 481 aa13.3□□□□□ -0.28
USP39-210ENST00000459775 TRIM37O94972 964 aa13.3□□□□□ -0.28
USP39-210ENST00000459775 PTF1AQ7RTS3 328 aa13.3□□□□□ -0.28
USP39-210ENST00000459775 LRRC37A3O60309 1634 aa13.29□□□□□ -0.28
USP39-210ENST00000459775 TNS2Q63HR2 1409 aa13.29□□□□□ -0.28
USP39-210ENST00000459775 KCNQ2O43526 872 aa13.28□□□□□ -0.28
USP39-210ENST00000459775 VAMP4O75379 141 aa13.28□□□□□ -0.28
USP39-210ENST00000459775 TWISTNBQ3B726 338 aaPredicted RBP13.28□□□□□ -0.28
USP39-210ENST00000459775 CDCA7Q9BWT1 371 aaPredicted RBP13.28□□□□□ -0.28
USP39-210ENST00000459775 HSP90AB1P08238 724 aaKnown RBP13.28□□□□□ -0.28
USP39-210ENST00000459775 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
USP39-210ENST00000459775 RARSP54136 660 aaKnown RBP13.28□□□□□ -0.28
USP39-210ENST00000459775 SSH1Q8WYL5 1049 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms