RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 SMARCC1Q92922 1105 aaPredicted RBP21.55■■□□□ 1.04
CHCHD3-204ENST00000457942 KNSTRNQ9Y448 316 aa21.55■■□□□ 1.04
CHCHD3-204ENST00000457942 N4BP2Q86UW6 1770 aaPredicted RBP21.54■■□□□ 1.04
CHCHD3-204ENST00000457942 PXDNLA1KZ92 1463 aa21.54■■□□□ 1.04
CHCHD3-204ENST00000457942 KIAA1551Q9HCM1 1747 aa21.53■■□□□ 1.04
CHCHD3-204ENST00000457942 LOC102724428A0A0B4J2F2 783 aa21.52■■□□□ 1.04
CHCHD3-204ENST00000457942 SSFA2P28290 1259 aa21.52■■□□□ 1.04
CHCHD3-204ENST00000457942 SIK1P57059 783 aa21.52■■□□□ 1.04
CHCHD3-204ENST00000457942 MMP10P09238 476 aa21.51■■□□□ 1.03
CHCHD3-204ENST00000457942 ITPK1Q13572 414 aa21.51■■□□□ 1.03
CHCHD3-204ENST00000457942 HMGB2P26583 209 aaKnown RBP21.5■■□□□ 1.03
CHCHD3-204ENST00000457942 IFNL2Q8IZJ0 200 aa21.5■■□□□ 1.03
CHCHD3-204ENST00000457942 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.5■■□□□ 1.03
CHCHD3-204ENST00000457942 BCS1LQ9Y276 419 aa21.5■■□□□ 1.03
CHCHD3-204ENST00000457942 TMOD3Q9NYL9 352 aa21.49■■□□□ 1.03
CHCHD3-204ENST00000457942 ASAP1Q9ULH1 1129 aa21.49■■□□□ 1.03
CHCHD3-204ENST00000457942 PHKG2P15735 406 aa21.48■■□□□ 1.03
CHCHD3-204ENST00000457942 ATP6V1AP38606 617 aa21.48■■□□□ 1.03
CHCHD3-204ENST00000457942 NKX1-1Q15270 411 aaPredicted RBP21.48■■□□□ 1.03
CHCHD3-204ENST00000457942 KIF7Q2M1P5 1343 aa21.48■■□□□ 1.03
CHCHD3-204ENST00000457942 A0A0G2JLW4 131 aa21.47■■□□□ 1.03
CHCHD3-204ENST00000457942 APLP1P51693 650 aa21.47■■□□□ 1.03
CHCHD3-204ENST00000457942 NMRK2Q9NPI5 230 aa21.47■■□□□ 1.03
CHCHD3-204ENST00000457942 KIF13BQ9NQT8 1826 aa21.46■■□□□ 1.03
CHCHD3-204ENST00000457942 ARHGAP27Q6ZUM4 889 aa21.45■■□□□ 1.02
CHCHD3-204ENST00000457942 WDR90Q96KV7 1748 aa21.45■■□□□ 1.02
CHCHD3-204ENST00000457942 C10orf71Q711Q0 1435 aa21.45■■□□□ 1.02
CHCHD3-204ENST00000457942 HTRA3P83110 453 aa21.44■■□□□ 1.02
CHCHD3-204ENST00000457942 PLEKHG2Q9H7P9 1386 aa21.44■■□□□ 1.02
CHCHD3-204ENST00000457942 PLEKHO1Q53GL0 409 aaPredicted RBP21.43■■□□□ 1.02
CHCHD3-204ENST00000457942 C4AP0C0L4 1744 aa21.43■■□□□ 1.02
CHCHD3-204ENST00000457942 TOMM70O94826 608 aa21.42■■□□□ 1.02
CHCHD3-204ENST00000457942 ZNF530Q6P9A1 599 aaPredicted RBP21.42■■□□□ 1.02
CHCHD3-204ENST00000457942 FCHSD2O94868 740 aa21.41■■□□□ 1.02
CHCHD3-204ENST00000457942 HSP90AB1P08238 724 aaKnown RBP21.41■■□□□ 1.02
CHCHD3-204ENST00000457942 DPEP1P16444 411 aa21.41■■□□□ 1.02
CHCHD3-204ENST00000457942 ATG3Q9NT62 314 aa21.41■■□□□ 1.02
CHCHD3-204ENST00000457942 KDRP35968 1356 aa21.4■■□□□ 1.02
CHCHD3-204ENST00000457942 AMER1Q5JTC6 1135 aaPredicted RBP21.4■■□□□ 1.02
CHCHD3-204ENST00000457942 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
CHCHD3-204ENST00000457942 RBM42Q9BTD8 480 aaKnown RBP21.4■■□□□ 1.02
CHCHD3-204ENST00000457942 CAPN15O75808 1086 aa21.39■■□□□ 1.01
CHCHD3-204ENST00000457942 AMOTQ4VCS5 1084 aa21.39■■□□□ 1.01
CHCHD3-204ENST00000457942 C1orf141Q5JVX7 400 aa21.39■■□□□ 1.01
CHCHD3-204ENST00000457942 DNAJC5GQ8N7S2 189 aa21.39■■□□□ 1.01
CHCHD3-204ENST00000457942 RTCBQ9Y3I0 505 aaKnown RBP21.39■■□□□ 1.01
CHCHD3-204ENST00000457942 COL5A3P25940 1745 aaPredicted RBP21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 CC2D1BQ5T0F9 858 aaKnown RBP21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 SULT6B1Q6IMI4 303 aa21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 DCAF5Q96JK2 942 aa21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 BRCA1P38398 1863 aaKnown RBP21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 KCPQ6ZWJ8 1503 aa21.38■■□□□ 1.01
CHCHD3-204ENST00000457942 TGFB2P61812 414 aa21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 CNGB1Q14028 1251 aaPredicted RBP21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 TRAPPC3LQ5T215 181 aa21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 C9orf131Q5VYM1 1079 aa21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 C16orf71Q8IYS4 520 aaPredicted RBP21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 SLC4A9Q96Q91 983 aa21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 CCDC87Q9NVE4 849 aa21.37■■□□□ 1.01
CHCHD3-204ENST00000457942 ERVV-2B6SEH9 535 aa21.35■■□□□ 1.01
CHCHD3-204ENST00000457942 CABP4P57796 275 aa21.35■■□□□ 1.01
CHCHD3-204ENST00000457942 ARHGEF1Q92888 912 aaKnown RBP21.35■■□□□ 1.01
CHCHD3-204ENST00000457942 GYS1P13807 737 aa21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 IL13P35225 146 aa21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 MTHFSP49914 203 aa21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 NLGN1Q8N2Q7 840 aa21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 PARP3Q9Y6F1 533 aa21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 KDM6AO15550 1401 aaPredicted RBP21.34■■□□□ 1.01
CHCHD3-204ENST00000457942 RFC4P35249 363 aa21.33■■□□□ 1.01
CHCHD3-204ENST00000457942 COL13A1Q5TAT6 717 aaPredicted RBP21.32■■□□□ 1
CHCHD3-204ENST00000457942 ARFGEF1Q9Y6D6 1849 aa21.32■■□□□ 1
CHCHD3-204ENST00000457942 RBM46Q8TBY0 533 aaKnown RBP21.31■■□□□ 1
CHCHD3-204ENST00000457942 RNF181Q9P0P0 153 aa21.31■■□□□ 1
CHCHD3-204ENST00000457942 SRP68Q9UHB9 627 aaKnown RBP21.31■■□□□ 1
CHCHD3-204ENST00000457942 HMOX1P09601 288 aa21.3■■□□□ 1
CHCHD3-204ENST00000457942 KLRG1Q96E93 195 aa21.3■■□□□ 1
CHCHD3-204ENST00000457942 ZNF831Q5JPB2 1677 aa21.3■■□□□ 1
CHCHD3-204ENST00000457942 SCN11AQ9UI33 1791 aa21.3■■□□□ 1
CHCHD3-204ENST00000457942 CNTNAP4Q9C0A0 1308 aa21.29■■□□□ 1
CHCHD3-204ENST00000457942 PER1O15534 1290 aaPredicted RBP21.29■■□□□ 1
CHCHD3-204ENST00000457942 KCNA3P22001 575 aa21.29■■□□□ 1
CHCHD3-204ENST00000457942 TNRC6CQ9HCJ0 1690 aaKnown RBP21.28■■□□□ 1
CHCHD3-204ENST00000457942 DIAPH1O60610 1272 aaKnown RBP21.28■■□□□ 1
CHCHD3-204ENST00000457942 PTCD1O75127 700 aaKnown RBP21.28■■□□□ 1
CHCHD3-204ENST00000457942 CHRNA5P30532 468 aa21.28■■□□□ 1
CHCHD3-204ENST00000457942 MYH14Q7Z406 1995 aaKnown RBP21.27■■□□□ 1
CHCHD3-204ENST00000457942 PCNTO95613 3336 aa21.27■■□□□ 1
CHCHD3-204ENST00000457942 RPS6KA4O75676 772 aa21.27■■□□□ 1
CHCHD3-204ENST00000457942 ADRA2BP18089 450 aa21.27■■□□□ 1
CHCHD3-204ENST00000457942 RRAGCQ9HB90 399 aa21.27■■□□□ 1
CHCHD3-204ENST00000457942 VIRMAQ69YN4 1812 aaKnown RBP21.27■□□□□ 0.99
CHCHD3-204ENST00000457942 TJP1Q07157 1748 aa21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 DDR1Q08345 913 aa21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 DALRD3Q5D0E6 543 aaKnown RBP21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 NFATC2IPQ8NCF5 419 aa21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 PIM2Q9P1W9 311 aa21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 KDM2BQ8NHM5 1336 aa21.26■□□□□ 0.99
CHCHD3-204ENST00000457942 RASSF7Q02833 373 aa21.25■□□□□ 0.99
CHCHD3-204ENST00000457942 FKBP8Q14318 412 aa21.25■□□□□ 0.99
CHCHD3-204ENST00000457942 AKAP4Q5JQC9 854 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms