RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 SSFA2P28290 1259 aa16.55■□□□□ 0.24
LMCD1-206ENST00000456506 ASAP1Q9ULH1 1129 aa16.55■□□□□ 0.24
LMCD1-206ENST00000456506 SPG7Q9UQ90 795 aa16.55■□□□□ 0.24
LMCD1-206ENST00000456506 IGSF1Q8N6C5 1336 aa16.54■□□□□ 0.24
LMCD1-206ENST00000456506 PHF14O94880 888 aa16.53■□□□□ 0.24
LMCD1-206ENST00000456506 SLC4A9Q96Q91 983 aa16.53■□□□□ 0.24
LMCD1-206ENST00000456506 ATG3Q9NT62 314 aa16.53■□□□□ 0.24
LMCD1-206ENST00000456506 PXDNLA1KZ92 1463 aa16.53■□□□□ 0.24
LMCD1-206ENST00000456506 KDM6AO15550 1401 aaPredicted RBP16.53■□□□□ 0.24
LMCD1-206ENST00000456506 PPM1GO15355 546 aaPredicted RBP16.52■□□□□ 0.24
LMCD1-206ENST00000456506 EIF4A2Q14240 407 aaKnown RBP16.52■□□□□ 0.24
LMCD1-206ENST00000456506 IFNL2Q8IZJ0 200 aa16.52■□□□□ 0.24
LMCD1-206ENST00000456506 TMOD3Q9NYL9 352 aa16.52■□□□□ 0.24
LMCD1-206ENST00000456506 SBF1O95248 1867 aa16.52■□□□□ 0.23
LMCD1-206ENST00000456506 TRIM26Q12899 539 aaPredicted RBP16.5■□□□□ 0.23
LMCD1-206ENST00000456506 TIMELESSQ9UNS1 1208 aa16.5■□□□□ 0.23
LMCD1-206ENST00000456506 C10orf71Q711Q0 1435 aa16.5■□□□□ 0.23
LMCD1-206ENST00000456506 AFDNP55196 1824 aaKnown RBP16.49■□□□□ 0.23
LMCD1-206ENST00000456506 GNPATO15228 680 aa16.49■□□□□ 0.23
LMCD1-206ENST00000456506 ATP6V1AP38606 617 aa16.49■□□□□ 0.23
LMCD1-206ENST00000456506 DLEC1Q9Y238 1755 aa16.49■□□□□ 0.23
LMCD1-206ENST00000456506 UBR2Q8IWV8 1755 aa16.46■□□□□ 0.23
LMCD1-206ENST00000456506 NRXN2Q9P2S2 1712 aa16.46■□□□□ 0.23
LMCD1-206ENST00000456506 GPBP1L1Q9HC44 474 aaPredicted RBP16.46■□□□□ 0.23
LMCD1-206ENST00000456506 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
LMCD1-206ENST00000456506 ERVV-2B6SEH9 535 aa16.45■□□□□ 0.22
LMCD1-206ENST00000456506 MMP10P09238 476 aa16.45■□□□□ 0.22
LMCD1-206ENST00000456506 CNTNAP4Q9C0A0 1308 aa16.45■□□□□ 0.22
LMCD1-206ENST00000456506 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
LMCD1-206ENST00000456506 KIF3CO14782 793 aa16.44■□□□□ 0.22
LMCD1-206ENST00000456506 TNNT2P45379 298 aaPredicted RBP16.44■□□□□ 0.22
LMCD1-206ENST00000456506 RC3H1Q5TC82 1133 aaKnown RBP16.44■□□□□ 0.22
LMCD1-206ENST00000456506 CLSPNQ9HAW4 1339 aa16.44■□□□□ 0.22
LMCD1-206ENST00000456506 WDR90Q96KV7 1748 aa16.43■□□□□ 0.22
LMCD1-206ENST00000456506 ZNF526Q8TF50 670 aaPredicted RBP16.43■□□□□ 0.22
LMCD1-206ENST00000456506 ARHGEF1Q92888 912 aaKnown RBP16.43■□□□□ 0.22
LMCD1-206ENST00000456506 DCAF5Q96JK2 942 aa16.43■□□□□ 0.22
LMCD1-206ENST00000456506 SIPA1L3O60292 1781 aaPredicted RBP16.43■□□□□ 0.22
LMCD1-206ENST00000456506 GYS1P13807 737 aa16.42■□□□□ 0.22
LMCD1-206ENST00000456506 HSPA6P17066 643 aa16.42■□□□□ 0.22
LMCD1-206ENST00000456506 MRC1P22897 1456 aa16.42■□□□□ 0.22
LMCD1-206ENST00000456506 RPS6KA4O75676 772 aa16.41■□□□□ 0.22
LMCD1-206ENST00000456506 ADRA2BP18089 450 aa16.41■□□□□ 0.22
LMCD1-206ENST00000456506 TGFB2P61812 414 aa16.41■□□□□ 0.22
LMCD1-206ENST00000456506 TRAPPC3LQ5T215 181 aa16.41■□□□□ 0.22
LMCD1-206ENST00000456506 AEBP1Q8IUX7 1158 aa16.41■□□□□ 0.22
LMCD1-206ENST00000456506 RTCBQ9Y3I0 505 aaKnown RBP16.41■□□□□ 0.22
LMCD1-206ENST00000456506 TNRC6CQ9HCJ0 1690 aaKnown RBP16.4■□□□□ 0.22
LMCD1-206ENST00000456506 NLGN1Q8N2Q7 840 aa16.4■□□□□ 0.22
LMCD1-206ENST00000456506 PANK3Q9H999 370 aa16.4■□□□□ 0.22
LMCD1-206ENST00000456506 HSP90AB1P08238 724 aaKnown RBP16.39■□□□□ 0.21
LMCD1-206ENST00000456506 KCNA3P22001 575 aa16.39■□□□□ 0.21
LMCD1-206ENST00000456506 IFFO2Q5TF58 517 aa16.39■□□□□ 0.21
LMCD1-206ENST00000456506 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
LMCD1-206ENST00000456506 KCPQ6ZWJ8 1503 aa16.39■□□□□ 0.21
LMCD1-206ENST00000456506 ANKRD31Q8N7Z5 1873 aa16.38■□□□□ 0.21
LMCD1-206ENST00000456506 A0A0G2JLW4 131 aa16.38■□□□□ 0.21
LMCD1-206ENST00000456506 AMOTQ4VCS5 1084 aa16.38■□□□□ 0.21
LMCD1-206ENST00000456506 PLEKHO1Q53GL0 409 aaPredicted RBP16.38■□□□□ 0.21
LMCD1-206ENST00000456506 ZNF530Q6P9A1 599 aaPredicted RBP16.38■□□□□ 0.21
LMCD1-206ENST00000456506 HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
LMCD1-206ENST00000456506 DPEP1P16444 411 aa16.37■□□□□ 0.21
LMCD1-206ENST00000456506 TIAM2Q8IVF5 1701 aa16.36■□□□□ 0.21
LMCD1-206ENST00000456506 POLR3GLQ9BT43 218 aa16.36■□□□□ 0.21
LMCD1-206ENST00000456506 IL13P35225 146 aa16.35■□□□□ 0.21
LMCD1-206ENST00000456506 CABP4P57796 275 aa16.35■□□□□ 0.21
LMCD1-206ENST00000456506 EIF4G2P78344 907 aaKnown RBP eCLIP16.35■□□□□ 0.21
LMCD1-206ENST00000456506 DDR1Q08345 913 aa16.35■□□□□ 0.21
LMCD1-206ENST00000456506 NFATC2IPQ8NCF5 419 aa16.35■□□□□ 0.21
LMCD1-206ENST00000456506 BCS1LQ9Y276 419 aa16.35■□□□□ 0.21
LMCD1-206ENST00000456506 USP42Q9H9J4 1324 aaKnown RBP16.35■□□□□ 0.21
LMCD1-206ENST00000456506 DICER1Q9UPY3 1922 aaKnown RBP16.35■□□□□ 0.21
LMCD1-206ENST00000456506 RFC4P35249 363 aa16.34■□□□□ 0.21
LMCD1-206ENST00000456506 CRKLP46109 303 aaKnown RBP16.34■□□□□ 0.21
LMCD1-206ENST00000456506 MTHFSP49914 203 aa16.34■□□□□ 0.21
LMCD1-206ENST00000456506 FKBP8Q14318 412 aa16.34■□□□□ 0.21
LMCD1-206ENST00000456506 INTS5Q6P9B9 1019 aaKnown RBP16.34■□□□□ 0.21
LMCD1-206ENST00000456506 CCDC87Q9NVE4 849 aa16.34■□□□□ 0.21
LMCD1-206ENST00000456506 SRP68Q9UHB9 627 aaKnown RBP16.34■□□□□ 0.21
LMCD1-206ENST00000456506 SCN7AQ01118 1682 aa16.34■□□□□ 0.21
LMCD1-206ENST00000456506 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
LMCD1-206ENST00000456506 SULT6B1Q6IMI4 303 aa16.33■□□□□ 0.2
LMCD1-206ENST00000456506 COL11A2P13942 1736 aaPredicted RBP16.33■□□□□ 0.2
LMCD1-206ENST00000456506 CACNA1SQ13698 1873 aa16.33■□□□□ 0.2
LMCD1-206ENST00000456506 PARP3Q9Y6F1 533 aa16.32■□□□□ 0.2
LMCD1-206ENST00000456506 TM4SF1P30408 202 aa16.31■□□□□ 0.2
LMCD1-206ENST00000456506 AMER1Q5JTC6 1135 aaPredicted RBP16.31■□□□□ 0.2
LMCD1-206ENST00000456506 MORC1Q86VD1 984 aa16.31■□□□□ 0.2
LMCD1-206ENST00000456506 FER1L6Q2WGJ9 1857 aa16.31■□□□□ 0.2
LMCD1-206ENST00000456506 ARFGEF2Q9Y6D5 1785 aa16.31■□□□□ 0.2
LMCD1-206ENST00000456506 TOMM70O94826 608 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 FCHSD2O94868 740 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 C1orf141Q5JVX7 400 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 ARHGAP27Q6ZUM4 889 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 DNAJC5GQ8N7S2 189 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 NMRK2Q9NPI5 230 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 BCORQ6W2J9 1755 aa16.3■□□□□ 0.2
LMCD1-206ENST00000456506 COL3A1P02461 1466 aaPredicted RBP16.29■□□□□ 0.2
LMCD1-206ENST00000456506 SOS1Q07889 1333 aaPredicted RBP16.29■□□□□ 0.2
LMCD1-206ENST00000456506 POLRMTO00411 1230 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 350.4 ms