RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 BARGINQ6ZT62 677 aa14.36□□□□□ -0.11
SCN9A-205ENST00000454569 GJD4Q96KN9 370 aaPredicted RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 QTRT2Q9H974 415 aaKnown RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 RGS17Q9UGC6 210 aaPredicted RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 THRAP3Q9Y2W1 955 aaKnown RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 LAS1LQ9Y4W2 734 aaKnown RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 CEMIPQ8WUJ3 1361 aa14.36□□□□□ -0.11
SCN9A-205ENST00000454569 HTATSF1O43719 755 aaKnown RBP14.35□□□□□ -0.11
SCN9A-205ENST00000454569 C1orf141Q5JVX7 400 aa14.35□□□□□ -0.11
SCN9A-205ENST00000454569 ILDR1Q86SU0 546 aaPredicted RBP14.35□□□□□ -0.11
SCN9A-205ENST00000454569 IFNL2Q8IZJ0 200 aa14.35□□□□□ -0.11
SCN9A-205ENST00000454569 RTF1Q92541 710 aaKnown RBP14.35□□□□□ -0.11
SCN9A-205ENST00000454569 LMOD3Q0VAK6 560 aa14.34□□□□□ -0.11
SCN9A-205ENST00000454569 EXOC5O00471 708 aa14.34□□□□□ -0.11
SCN9A-205ENST00000454569 TRPC5Q9UL62 973 aaPredicted RBP14.34□□□□□ -0.11
SCN9A-205ENST00000454569 KDM3BQ7LBC6 1761 aa14.33□□□□□ -0.11
SCN9A-205ENST00000454569 PCDH11XQ9BZA7 1347 aa14.33□□□□□ -0.11
SCN9A-205ENST00000454569 PCDH11YQ9BZA8 1340 aa14.33□□□□□ -0.11
SCN9A-205ENST00000454569 FANCIQ9NVI1 1328 aa14.33□□□□□ -0.11
SCN9A-205ENST00000454569 PLEKHG2Q9H7P9 1386 aa14.33□□□□□ -0.12
SCN9A-205ENST00000454569 E9PSI1 815 aa14.33□□□□□ -0.12
SCN9A-205ENST00000454569 MARCH10Q8NA82 808 aaPredicted RBP14.33□□□□□ -0.12
SCN9A-205ENST00000454569 MBIPQ9NS73 344 aa14.33□□□□□ -0.12
SCN9A-205ENST00000454569 TNS2Q63HR2 1409 aa14.33□□□□□ -0.12
SCN9A-205ENST00000454569 IL16Q14005 1332 aa14.33□□□□□ -0.12
SCN9A-205ENST00000454569 CHL1O00533 1208 aa14.32□□□□□ -0.12
SCN9A-205ENST00000454569 KCNQ3O43525 872 aa14.32□□□□□ -0.12
SCN9A-205ENST00000454569 CFAP44Q96MT7 982 aa14.32□□□□□ -0.12
SCN9A-205ENST00000454569 DOT1LQ8TEK3 1739 aa14.32□□□□□ -0.12
SCN9A-205ENST00000454569 NKX1-1Q15270 411 aaPredicted RBP14.31□□□□□ -0.12
SCN9A-205ENST00000454569 DDB1Q16531 1140 aa14.31□□□□□ -0.12
SCN9A-205ENST00000454569 KRT24Q2M2I5 525 aa14.31□□□□□ -0.12
SCN9A-205ENST00000454569 IFT57Q9NWB7 429 aa14.31□□□□□ -0.12
SCN9A-205ENST00000454569 ONECUT3O60422 494 aaPredicted RBP14.3□□□□□ -0.12
SCN9A-205ENST00000454569 EXOSC9Q06265 439 aaKnown RBP14.3□□□□□ -0.12
SCN9A-205ENST00000454569 FAM182BQ5T319 152 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 CDCA7Q9BWT1 371 aaPredicted RBP14.3□□□□□ -0.12
SCN9A-205ENST00000454569 GNAI1P63096 354 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 TAF7Q15545 349 aaPredicted RBP14.3□□□□□ -0.12
SCN9A-205ENST00000454569 POTEAQ6S8J7 498 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 TSPYL6Q8N831 410 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 NFATC2IPQ8NCF5 419 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 DCAF5Q96JK2 942 aa14.3□□□□□ -0.12
SCN9A-205ENST00000454569 SBF2Q86WG5 1849 aa14.29□□□□□ -0.12
SCN9A-205ENST00000454569 MRC1P22897 1456 aa14.29□□□□□ -0.12
SCN9A-205ENST00000454569 C8orf58Q8NAV2 365 aa14.29□□□□□ -0.12
SCN9A-205ENST00000454569 A0A0G2JS52 829 aa14.28□□□□□ -0.12
SCN9A-205ENST00000454569 MYT1Q01538 1121 aa14.28□□□□□ -0.12
SCN9A-205ENST00000454569 SEPT12Q8IYM1 358 aa14.28□□□□□ -0.12
SCN9A-205ENST00000454569 MYH16Q9H6N6 1097 aa14.28□□□□□ -0.12
SCN9A-205ENST00000454569 SLC52A2Q9HAB3 445 aa14.28□□□□□ -0.12
SCN9A-205ENST00000454569 ELL2O00472 640 aaPredicted RBP14.27□□□□□ -0.12
SCN9A-205ENST00000454569 TEFQ10587 303 aa14.27□□□□□ -0.12
SCN9A-205ENST00000454569 SLC39A6Q13433 755 aa14.27□□□□□ -0.12
SCN9A-205ENST00000454569 ZNF772Q68DY9 489 aaPredicted RBP14.27□□□□□ -0.12
SCN9A-205ENST00000454569 TSPYL4Q9UJ04 414 aa14.27□□□□□ -0.12
SCN9A-205ENST00000454569 EP400Q96L91 3159 aa14.27□□□□□ -0.12
SCN9A-205ENST00000454569 CALD1Q05682 793 aaKnown RBP14.26□□□□□ -0.13
SCN9A-205ENST00000454569 PAPPAQ13219 1627 aa14.26□□□□□ -0.13
SCN9A-205ENST00000454569 BTBD11A6QL63 1104 aa14.26□□□□□ -0.13
SCN9A-205ENST00000454569 HSP90AB1P08238 724 aaKnown RBP14.26□□□□□ -0.13
SCN9A-205ENST00000454569 PTF1AQ7RTS3 328 aa14.26□□□□□ -0.13
SCN9A-205ENST00000454569 ACSBG1Q96GR2 724 aa14.26□□□□□ -0.13
SCN9A-205ENST00000454569 UBR2Q8IWV8 1755 aa14.25□□□□□ -0.13
SCN9A-205ENST00000454569 CABP4P57796 275 aa14.25□□□□□ -0.13
SCN9A-205ENST00000454569 SUPT16HQ9Y5B9 1047 aaKnown RBP14.25□□□□□ -0.13
SCN9A-205ENST00000454569 C5P01031 1676 aa14.25□□□□□ -0.13
SCN9A-205ENST00000454569 ERVV-2B6SEH9 535 aa14.24□□□□□ -0.13
SCN9A-205ENST00000454569 KCNQ2O43526 872 aa14.24□□□□□ -0.13
SCN9A-205ENST00000454569 VAMP4O75379 141 aa14.24□□□□□ -0.13
SCN9A-205ENST00000454569 PRIM1P49642 420 aaKnown RBP14.24□□□□□ -0.13
SCN9A-205ENST00000454569 RBM6P78332 1123 aaKnown RBP14.24□□□□□ -0.13
SCN9A-205ENST00000454569 PIGBQ92521 554 aa14.24□□□□□ -0.13
SCN9A-205ENST00000454569 PRAMEF22A3QJZ6 481 aa14.23□□□□□ -0.13
SCN9A-205ENST00000454569 BCAR3O75815 825 aa14.23□□□□□ -0.13
SCN9A-205ENST00000454569 EIF4A1P60842 406 aaKnown RBP14.23□□□□□ -0.13
SCN9A-205ENST00000454569 RCAN3Q9UKA8 241 aa14.23□□□□□ -0.13
SCN9A-205ENST00000454569 TCERG1O14776 1098 aaKnown RBP14.22□□□□□ -0.13
SCN9A-205ENST00000454569 SPOCK2Q92563 424 aa14.22□□□□□ -0.13
SCN9A-205ENST00000454569 BCL2L13Q9BXK5 485 aa14.22□□□□□ -0.13
SCN9A-205ENST00000454569 ASAP1Q9ULH1 1129 aa14.22□□□□□ -0.13
SCN9A-205ENST00000454569 BTAF1O14981 1849 aa14.21□□□□□ -0.13
SCN9A-205ENST00000454569 BCL9O00512 1426 aa14.21□□□□□ -0.13
SCN9A-205ENST00000454569 RXRBP28702 533 aa14.21□□□□□ -0.14
SCN9A-205ENST00000454569 TWISTNBQ3B726 338 aaPredicted RBP14.21□□□□□ -0.14
SCN9A-205ENST00000454569 ZNF790Q6PG37 636 aa14.21□□□□□ -0.14
SCN9A-205ENST00000454569 SYTL4Q96C24 671 aaPredicted RBP14.21□□□□□ -0.14
SCN9A-205ENST00000454569 BABAM1Q9NWV8 329 aa14.21□□□□□ -0.14
SCN9A-205ENST00000454569 KCPQ6ZWJ8 1503 aa14.21□□□□□ -0.14
SCN9A-205ENST00000454569 RGS12O14924 1447 aa14.2□□□□□ -0.14
SCN9A-205ENST00000454569 HEG1Q9ULI3 1381 aa14.2□□□□□ -0.14
SCN9A-205ENST00000454569 RARSP54136 660 aaKnown RBP14.2□□□□□ -0.14
SCN9A-205ENST00000454569 ZNF496Q96IT1 587 aaPredicted RBP14.2□□□□□ -0.14
SCN9A-205ENST00000454569 TMOD3Q9NYL9 352 aa14.2□□□□□ -0.14
SCN9A-205ENST00000454569 NHSQ6T4R5 1651 aa14.19□□□□□ -0.14
SCN9A-205ENST00000454569 PLIN1O60240 522 aa14.19□□□□□ -0.14
SCN9A-205ENST00000454569 PLCB2Q00722 1185 aa14.19□□□□□ -0.14
SCN9A-205ENST00000454569 KLHL34Q8N239 644 aa14.19□□□□□ -0.14
SCN9A-205ENST00000454569 ATG3Q9NT62 314 aa14.19□□□□□ -0.14
SCN9A-205ENST00000454569 CACNA1FO60840 1977 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms