RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 RRP1P56182 461 aaKnown RBP20.31■□□□□ 0.84
SNX17-204ENST00000453453 TAF7Q15545 349 aaPredicted RBP20.31■□□□□ 0.84
SNX17-204ENST00000453453 DCAF5Q96JK2 942 aa20.31■□□□□ 0.84
SNX17-204ENST00000453453 CYP27B1O15528 508 aa20.31■□□□□ 0.84
SNX17-204ENST00000453453 EXOSC9Q06265 439 aaKnown RBP20.31■□□□□ 0.84
SNX17-204ENST00000453453 BARGINQ6ZT62 677 aa20.31■□□□□ 0.84
SNX17-204ENST00000453453 LGR6Q9HBX8 967 aa20.31■□□□□ 0.84
SNX17-204ENST00000453453 TSPYL4Q9UJ04 414 aa20.31■□□□□ 0.84
SNX17-204ENST00000453453 SIPA1L3O60292 1781 aaPredicted RBP20.3■□□□□ 0.84
SNX17-204ENST00000453453 EXOC5O00471 708 aa20.29■□□□□ 0.84
SNX17-204ENST00000453453 TNS2Q63HR2 1409 aa20.29■□□□□ 0.84
SNX17-204ENST00000453453 DDX54Q8TDD1 881 aaKnown RBP20.28■□□□□ 0.84
SNX17-204ENST00000453453 KDM6AO15550 1401 aaPredicted RBP20.28■□□□□ 0.84
SNX17-204ENST00000453453 KDM3BQ7LBC6 1761 aa20.27■□□□□ 0.84
SNX17-204ENST00000453453 NBR1Q14596 966 aa20.27■□□□□ 0.83
SNX17-204ENST00000453453 DDB1Q16531 1140 aa20.26■□□□□ 0.83
SNX17-204ENST00000453453 MRC1P22897 1456 aa20.26■□□□□ 0.83
SNX17-204ENST00000453453 NKX1-1Q15270 411 aaPredicted RBP20.25■□□□□ 0.83
SNX17-204ENST00000453453 TRPC5Q9UL62 973 aaPredicted RBP20.25■□□□□ 0.83
SNX17-204ENST00000453453 BTBD11A6QL63 1104 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 ZNF428Q96B54 188 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 MIS18AQ9NYP9 233 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 ATRNO75882 1429 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 CABP4P57796 275 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.24■□□□□ 0.83
SNX17-204ENST00000453453 SLC52A2Q9HAB3 445 aa20.24■□□□□ 0.83
SNX17-204ENST00000453453 ERVV-2B6SEH9 535 aa20.23■□□□□ 0.83
SNX17-204ENST00000453453 FAM98CQ17RN3 349 aaKnown RBP20.23■□□□□ 0.83
SNX17-204ENST00000453453 TWISTNBQ3B726 338 aaPredicted RBP20.22■□□□□ 0.83
SNX17-204ENST00000453453 A0A0G2JS52 829 aa20.21■□□□□ 0.83
SNX17-204ENST00000453453 GJD4Q96KN9 370 aaPredicted RBP20.21■□□□□ 0.83
SNX17-204ENST00000453453 GLI3P10071 1580 aa20.21■□□□□ 0.83
SNX17-204ENST00000453453 SOS1Q07889 1333 aaPredicted RBP20.2■□□□□ 0.82
SNX17-204ENST00000453453 RARSP54136 660 aaKnown RBP20.2■□□□□ 0.82
SNX17-204ENST00000453453 TOGARAM1Q9Y4F4 1720 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 THSD7AQ9UPZ6 1657 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 C8orf58Q8NAV2 365 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 NFATC2IPQ8NCF5 419 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 DDRGK1Q96HY6 314 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 BACH2Q9BYV9 841 aa20.2■□□□□ 0.82
SNX17-204ENST00000453453 ZNF772Q68DY9 489 aaPredicted RBP20.19■□□□□ 0.82
SNX17-204ENST00000453453 ELL2O00472 640 aaPredicted RBP20.18■□□□□ 0.82
SNX17-204ENST00000453453 VAMP4O75379 141 aa20.18■□□□□ 0.82
SNX17-204ENST00000453453 ALDH1L2Q3SY69 923 aa20.18■□□□□ 0.82
SNX17-204ENST00000453453 QTRT2Q9H974 415 aaKnown RBP20.18■□□□□ 0.82
SNX17-204ENST00000453453 SMC4Q9NTJ3 1288 aa20.18■□□□□ 0.82
SNX17-204ENST00000453453 PDE4AP27815 886 aa20.17■□□□□ 0.82
SNX17-204ENST00000453453 CANXP27824 592 aaKnown RBP20.17■□□□□ 0.82
SNX17-204ENST00000453453 TSPYL6Q8N831 410 aa20.17■□□□□ 0.82
SNX17-204ENST00000453453 CHMP4AQ9BY43 222 aa20.17■□□□□ 0.82
SNX17-204ENST00000453453 ITGB4P16144 1822 aa20.17■□□□□ 0.82
SNX17-204ENST00000453453 TTC5Q8N0Z6 440 aa20.16■□□□□ 0.82
SNX17-204ENST00000453453 DOT1LQ8TEK3 1739 aa20.16■□□□□ 0.82
SNX17-204ENST00000453453 BCAR3O75815 825 aa20.16■□□□□ 0.82
SNX17-204ENST00000453453 TMOD3Q9NYL9 352 aa20.16■□□□□ 0.82
SNX17-204ENST00000453453 EIF4A1P60842 406 aaKnown RBP20.15■□□□□ 0.82
SNX17-204ENST00000453453 KAT6BQ8WYB5 2073 aa20.15■□□□□ 0.82
SNX17-204ENST00000453453 HOXB7P09629 217 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 KRT24Q2M2I5 525 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 ZNF790Q6PG37 636 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 SSH1Q8WYL5 1049 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 BCL2L13Q9BXK5 485 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 PAPPAQ13219 1627 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 KIF16BQ96L93 1317 aa20.14■□□□□ 0.81
SNX17-204ENST00000453453 MARCH10Q8NA82 808 aaPredicted RBP20.13■□□□□ 0.81
SNX17-204ENST00000453453 EXOC6Q8TAG9 804 aa20.13■□□□□ 0.81
SNX17-204ENST00000453453 KCNQ3O43525 872 aa20.12■□□□□ 0.81
SNX17-204ENST00000453453 FRAT1Q92837 279 aaPredicted RBP20.12■□□□□ 0.81
SNX17-204ENST00000453453 CACNA1FO60840 1977 aa20.11■□□□□ 0.81
SNX17-204ENST00000453453 SLC39A6Q13433 755 aa20.11■□□□□ 0.81
SNX17-204ENST00000453453 UBR2Q8IWV8 1755 aa20.11■□□□□ 0.81
SNX17-204ENST00000453453 IPO8O15397 1037 aaKnown RBP20.1■□□□□ 0.81
SNX17-204ENST00000453453 PLIN1O60240 522 aa20.1■□□□□ 0.81
SNX17-204ENST00000453453 ONECUT3O60422 494 aaPredicted RBP20.1■□□□□ 0.81
SNX17-204ENST00000453453 CCDC30Q5VVM6 783 aa20.1■□□□□ 0.81
SNX17-204ENST00000453453 FMNL2Q96PY5 1086 aa20.1■□□□□ 0.81
SNX17-204ENST00000453453 STK31Q9BXU1 1019 aa20.1■□□□□ 0.81
SNX17-204ENST00000453453 BRPF1P55201 1214 aaPredicted RBP20.09■□□□□ 0.81
SNX17-204ENST00000453453 ZKSCAN2Q63HK3 967 aa20.09■□□□□ 0.81
SNX17-204ENST00000453453 SEPT12Q8IYM1 358 aa20.09■□□□□ 0.81
SNX17-204ENST00000453453 SYTL4Q96C24 671 aaPredicted RBP20.09■□□□□ 0.81
SNX17-204ENST00000453453 HEG1Q9ULI3 1381 aa20.08■□□□□ 0.81
SNX17-204ENST00000453453 RBM6P78332 1123 aaKnown RBP20.08■□□□□ 0.8
SNX17-204ENST00000453453 HDGFL1Q5TGJ6 251 aa20.08■□□□□ 0.8
SNX17-204ENST00000453453 MRPL50Q8N5N7 158 aaKnown RBP20.08■□□□□ 0.8
SNX17-204ENST00000453453 BCL9O00512 1426 aa20.08■□□□□ 0.8
SNX17-204ENST00000453453 PIGBQ92521 554 aa20.07■□□□□ 0.8
SNX17-204ENST00000453453 LAMB4A4D0S4 1761 aa20.06■□□□□ 0.8
SNX17-204ENST00000453453 GIGYF1O75420 1035 aaPredicted RBP20.06■□□□□ 0.8
SNX17-204ENST00000453453 PRIM1P49642 420 aaKnown RBP20.06■□□□□ 0.8
SNX17-204ENST00000453453 ZNF496Q96IT1 587 aaPredicted RBP20.06■□□□□ 0.8
SNX17-204ENST00000453453 C5P01031 1676 aa20.06■□□□□ 0.8
SNX17-204ENST00000453453 SNRPA1P09661 255 aaKnown RBP20.05■□□□□ 0.8
SNX17-204ENST00000453453 PDE3AQ14432 1141 aa20.05■□□□□ 0.8
SNX17-204ENST00000453453 NOB1Q9ULX3 412 aaKnown RBP20.05■□□□□ 0.8
SNX17-204ENST00000453453 KCPQ6ZWJ8 1503 aa20.05■□□□□ 0.8
SNX17-204ENST00000453453 EIF2S2P20042 333 aaKnown RBP20.05■□□□□ 0.8
SNX17-204ENST00000453453 ACSBG1Q96GR2 724 aa20.05■□□□□ 0.8
SNX17-204ENST00000453453 FTSJ3Q8IY81 847 aaKnown RBP20.04■□□□□ 0.8
SNX17-204ENST00000453453 ARHGAP45Q92619 1136 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms