RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 COL5A3P25940 1745 aaPredicted RBP16.94■□□□□ 0.3
CPSF4-208ENST00000452047 POLD1P28340 1107 aa16.93■□□□□ 0.3
CPSF4-208ENST00000452047 ITPK1Q13572 414 aa16.93■□□□□ 0.3
CPSF4-208ENST00000452047 LINC00116Q8NCU8 138 aa16.93■□□□□ 0.3
CPSF4-208ENST00000452047 FLAD1Q8NFF5 587 aa16.92■□□□□ 0.3
CPSF4-208ENST00000452047 AK7Q96M32 723 aa16.92■□□□□ 0.3
CPSF4-208ENST00000452047 ADAMTS7Q9UKP4 1686 aa16.91■□□□□ 0.3
CPSF4-208ENST00000452047 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
CPSF4-208ENST00000452047 MSH5O43196 834 aa16.91■□□□□ 0.3
CPSF4-208ENST00000452047 C1orf141Q5JVX7 400 aa16.91■□□□□ 0.3
CPSF4-208ENST00000452047 CICQ96RK0 1608 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-208ENST00000452047 DIAPH1O60610 1272 aaKnown RBP16.9■□□□□ 0.3
CPSF4-208ENST00000452047 ATP6V1AP38606 617 aa16.9■□□□□ 0.3
CPSF4-208ENST00000452047 SLC4A9Q96Q91 983 aa16.9■□□□□ 0.3
CPSF4-208ENST00000452047 MRC1P22897 1456 aa16.9■□□□□ 0.3
CPSF4-208ENST00000452047 HMOX1P09601 288 aa16.89■□□□□ 0.29
CPSF4-208ENST00000452047 SSFA2P28290 1259 aa16.89■□□□□ 0.29
CPSF4-208ENST00000452047 MSL1Q68DK7 614 aa16.89■□□□□ 0.29
CPSF4-208ENST00000452047 SMIM5Q71RC9 77 aa16.89■□□□□ 0.29
CPSF4-208ENST00000452047 TJP1Q07157 1748 aa16.88■□□□□ 0.29
CPSF4-208ENST00000452047 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.88■□□□□ 0.29
CPSF4-208ENST00000452047 CABP4P57796 275 aa16.88■□□□□ 0.29
CPSF4-208ENST00000452047 PHF14O94880 888 aa16.87■□□□□ 0.29
CPSF4-208ENST00000452047 YY1P25490 414 aa16.87■□□□□ 0.29
CPSF4-208ENST00000452047 CNGB1Q14028 1251 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-208ENST00000452047 AKAP4Q5JQC9 854 aa16.87■□□□□ 0.29
CPSF4-208ENST00000452047 CHD4Q14839 1912 aa16.87■□□□□ 0.29
CPSF4-208ENST00000452047 MYH14Q7Z406 1995 aaKnown RBP16.87■□□□□ 0.29
CPSF4-208ENST00000452047 GNPATO15228 680 aa16.86■□□□□ 0.29
CPSF4-208ENST00000452047 KLHL34Q8N239 644 aa16.86■□□□□ 0.29
CPSF4-208ENST00000452047 NFATC2IPQ8NCF5 419 aa16.86■□□□□ 0.29
CPSF4-208ENST00000452047 NLGN2Q8NFZ4 835 aa16.86■□□□□ 0.29
CPSF4-208ENST00000452047 C4AP0C0L4 1744 aa16.85■□□□□ 0.29
CPSF4-208ENST00000452047 RBM42Q9BTD8 480 aaKnown RBP16.85■□□□□ 0.29
CPSF4-208ENST00000452047 MTHFSDQ2M296 383 aaKnown RBP16.84■□□□□ 0.29
CPSF4-208ENST00000452047 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
CPSF4-208ENST00000452047 SLC52A2Q9HAB3 445 aa16.83■□□□□ 0.28
CPSF4-208ENST00000452047 LGR6Q9HBX8 967 aa16.83■□□□□ 0.28
CPSF4-208ENST00000452047 UBR2Q8IWV8 1755 aa16.82■□□□□ 0.28
CPSF4-208ENST00000452047 RNMTO43148 476 aaKnown RBP16.82■□□□□ 0.28
CPSF4-208ENST00000452047 PTCD1O75127 700 aaKnown RBP16.82■□□□□ 0.28
CPSF4-208ENST00000452047 RC3H1Q5TC82 1133 aaKnown RBP16.82■□□□□ 0.28
CPSF4-208ENST00000452047 KCPQ6ZWJ8 1503 aa16.81■□□□□ 0.28
CPSF4-208ENST00000452047 U2SURPO15042 1029 aaKnown RBP16.81■□□□□ 0.28
CPSF4-208ENST00000452047 RTCBQ9Y3I0 505 aaKnown RBP16.81■□□□□ 0.28
CPSF4-208ENST00000452047 SIPA1L3O60292 1781 aaPredicted RBP16.81■□□□□ 0.28
CPSF4-208ENST00000452047 CD2APQ9Y5K6 639 aa16.8■□□□□ 0.28
CPSF4-208ENST00000452047 ADRA2BP18089 450 aa16.79■□□□□ 0.28
CPSF4-208ENST00000452047 PPP2R1AP30153 589 aa16.79■□□□□ 0.28
CPSF4-208ENST00000452047 GPR162Q16538 588 aa16.79■□□□□ 0.28
CPSF4-208ENST00000452047 KIF13BQ9NQT8 1826 aa16.79■□□□□ 0.28
CPSF4-208ENST00000452047 RPS6KA4O75676 772 aa16.78■□□□□ 0.28
CPSF4-208ENST00000452047 CRKLP46109 303 aaKnown RBP16.78■□□□□ 0.28
CPSF4-208ENST00000452047 TRAPPC3LQ5T215 181 aa16.78■□□□□ 0.28
CPSF4-208ENST00000452047 CFAP53Q96M91 514 aa16.78■□□□□ 0.28
CPSF4-208ENST00000452047 ARHGEF1Q92888 912 aaKnown RBP16.77■□□□□ 0.28
CPSF4-208ENST00000452047 RSPH6AQ9H0K4 717 aa16.77■□□□□ 0.28
CPSF4-208ENST00000452047 KIAA1551Q9HCM1 1747 aa16.76■□□□□ 0.27
CPSF4-208ENST00000452047 YBX3P16989 372 aaKnown RBP eCLIP16.76■□□□□ 0.275e-8■□□□□ 10.9
CPSF4-208ENST00000452047 SLC39A6Q13433 755 aa16.76■□□□□ 0.27
CPSF4-208ENST00000452047 GAS2L2Q8NHY3 880 aa16.76■□□□□ 0.27
CPSF4-208ENST00000452047 MMP10P09238 476 aa16.75■□□□□ 0.27
CPSF4-208ENST00000452047 PELP1Q8IZL8 1130 aaKnown RBP16.75■□□□□ 0.27
CPSF4-208ENST00000452047 GNAT3A8MTJ3 354 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 GYS1P13807 737 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 PRKAR2BP31323 418 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 INTS5Q6P9B9 1019 aaKnown RBP16.74■□□□□ 0.27
CPSF4-208ENST00000452047 DNAJC10Q8IXB1 793 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 IL17REQ8NFR9 667 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 PHACTR3Q96KR7 559 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 CEMIPQ8WUJ3 1361 aa16.74■□□□□ 0.27
CPSF4-208ENST00000452047 RFC4P35249 363 aa16.73■□□□□ 0.27
CPSF4-208ENST00000452047 NLGN1Q8N2Q7 840 aa16.73■□□□□ 0.27
CPSF4-208ENST00000452047 NUDCQ9Y266 331 aa16.73■□□□□ 0.27
CPSF4-208ENST00000452047 C10orf71Q711Q0 1435 aa16.72■□□□□ 0.27
CPSF4-208ENST00000452047 CYP19A1P11511 503 aaPredicted RBP16.72■□□□□ 0.27
CPSF4-208ENST00000452047 ZNF784Q8NCA9 323 aaPredicted RBP16.72■□□□□ 0.27
CPSF4-208ENST00000452047 USP42Q9H9J4 1324 aaKnown RBP16.71■□□□□ 0.27
CPSF4-208ENST00000452047 VSIG10Q8N0Z9 540 aa16.71■□□□□ 0.27
CPSF4-208ENST00000452047 CCDC87Q9NVE4 849 aa16.71■□□□□ 0.27
CPSF4-208ENST00000452047 PXDNLA1KZ92 1463 aa16.71■□□□□ 0.27
CPSF4-208ENST00000452047 N4BP2Q86UW6 1770 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-208ENST00000452047 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
CPSF4-208ENST00000452047 GRIN3BO60391 1043 aa16.7■□□□□ 0.26
CPSF4-208ENST00000452047 U2AF1L5P0DN76 240 aaPredicted RBP16.7■□□□□ 0.26
CPSF4-208ENST00000452047 U2AF1Q01081 240 aaKnown RBP eCLIP16.7■□□□□ 0.26
CPSF4-208ENST00000452047 SRP68Q9UHB9 627 aaKnown RBP16.7■□□□□ 0.26
CPSF4-208ENST00000452047 BRCA1P38398 1863 aaKnown RBP16.69■□□□□ 0.26
CPSF4-208ENST00000452047 FCHSD2O94868 740 aa16.69■□□□□ 0.26
CPSF4-208ENST00000452047 TEFQ10587 303 aa16.69■□□□□ 0.26
CPSF4-208ENST00000452047 ZNF790Q6PG37 636 aa16.68■□□□□ 0.26
CPSF4-208ENST00000452047 TTC5Q8N0Z6 440 aa16.68■□□□□ 0.26
CPSF4-208ENST00000452047 ZNF496Q96IT1 587 aaPredicted RBP16.68■□□□□ 0.26
CPSF4-208ENST00000452047 ZBTB1Q9Y2K1 713 aa16.68■□□□□ 0.26
CPSF4-208ENST00000452047 COL15A1P39059 1388 aa16.67■□□□□ 0.26
CPSF4-208ENST00000452047 HEG1Q9ULI3 1381 aa16.67■□□□□ 0.26
CPSF4-208ENST00000452047 DLG5Q8TDM6 1919 aa16.67■□□□□ 0.26
CPSF4-208ENST00000452047 FKBP8Q14318 412 aa16.67■□□□□ 0.26
CPSF4-208ENST00000452047 PARP3Q9Y6F1 533 aa16.66■□□□□ 0.26
CPSF4-208ENST00000452047 NRXN2Q9P2S2 1712 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms