RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 ATP6V1AP38606 617 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 SIK1P57059 783 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 CABP4P57796 275 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 LINC00116Q8NCU8 138 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 ARXQ96QS3 562 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 ATG3Q9NT62 314 aa13.06□□□□□ -0.32
USP54-207ENST00000451492 ZNF831Q5JPB2 1677 aa13.05□□□□□ -0.32
USP54-207ENST00000451492 C4AP0C0L4 1744 aa13.05□□□□□ -0.32
USP54-207ENST00000451492 POLD1P28340 1107 aa13.05□□□□□ -0.32
USP54-207ENST00000451492 COL23A1Q86Y22 540 aaPredicted RBP13.05□□□□□ -0.32
USP54-207ENST00000451492 SGIP1Q9BQI5 828 aa13.05□□□□□ -0.32
USP54-207ENST00000451492 ERVV-2B6SEH9 535 aa13.04□□□□□ -0.32
USP54-207ENST00000451492 ITPK1Q13572 414 aa13.04□□□□□ -0.32
USP54-207ENST00000451492 AMIGO3Q86WK7 504 aa13.04□□□□□ -0.32
USP54-207ENST00000451492 ADAMTS7Q9UKP4 1686 aa13.04□□□□□ -0.32
USP54-207ENST00000451492 MYH14Q7Z406 1995 aaKnown RBP13.03□□□□□ -0.32
USP54-207ENST00000451492 SIPA1L3O60292 1781 aaPredicted RBP13.03□□□□□ -0.32
USP54-207ENST00000451492 AKAP4Q5JQC9 854 aa13.03□□□□□ -0.32
USP54-207ENST00000451492 SLC16A10Q8TF71 515 aa13.03□□□□□ -0.32
USP54-207ENST00000451492 CFAP53Q96M91 514 aa13.03□□□□□ -0.32
USP54-207ENST00000451492 DCAF8L1A6NGE4 600 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 GNPATO15228 680 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 PTCD1O75127 700 aaKnown RBP13.02□□□□□ -0.33
USP54-207ENST00000451492 MTHFSDQ2M296 383 aaKnown RBP13.02□□□□□ -0.33
USP54-207ENST00000451492 NFATC2IPQ8NCF5 419 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 SYT17Q9BSW7 474 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 MRC1P22897 1456 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 UBR2Q8IWV8 1755 aa13.02□□□□□ -0.33
USP54-207ENST00000451492 PPP2R1AP30153 589 aa13.01□□□□□ -0.33
USP54-207ENST00000451492 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
USP54-207ENST00000451492 LGR6Q9HBX8 967 aa13.01□□□□□ -0.33
USP54-207ENST00000451492 CICQ96RK0 1608 aaPredicted RBP13.01□□□□□ -0.33
USP54-207ENST00000451492 DLG5Q8TDM6 1919 aa13.01□□□□□ -0.33
USP54-207ENST00000451492 CHD4Q14839 1912 aa13□□□□□ -0.33
USP54-207ENST00000451492 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13□□□□□ -0.33
USP54-207ENST00000451492 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
USP54-207ENST00000451492 RNMTO43148 476 aaKnown RBP12.99□□□□□ -0.33
USP54-207ENST00000451492 FLAD1Q8NFF5 587 aa12.99□□□□□ -0.33
USP54-207ENST00000451492 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 MAP3K5Q99683 1374 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 SSFA2P28290 1259 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 PRKAR2BP31323 418 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 SLC39A6Q13433 755 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 NLGN2Q8NFZ4 835 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 SLC52A2Q9HAB3 445 aa12.98□□□□□ -0.33
USP54-207ENST00000451492 GOLGB1Q14789 3259 aaKnown RBP12.97□□□□□ -0.33
USP54-207ENST00000451492 U2AF1L5P0DN76 240 aaPredicted RBP12.97□□□□□ -0.33
USP54-207ENST00000451492 HMGB2P26583 209 aaKnown RBP12.97□□□□□ -0.33
USP54-207ENST00000451492 U2AF1Q01081 240 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP54-207ENST00000451492 UTRNP46939 3433 aa12.97□□□□□ -0.33
USP54-207ENST00000451492 N4BP2Q86UW6 1770 aaPredicted RBP12.97□□□□□ -0.33
USP54-207ENST00000451492 RSPH6AQ9H0K4 717 aa12.96□□□□□ -0.33
USP54-207ENST00000451492 NUDCQ9Y266 331 aa12.96□□□□□ -0.33
USP54-207ENST00000451492 RTCBQ9Y3I0 505 aaKnown RBP12.96□□□□□ -0.33
USP54-207ENST00000451492 YY1P25490 414 aa12.95□□□□□ -0.34
USP54-207ENST00000451492 DDX10Q13206 875 aaKnown RBP12.95□□□□□ -0.34
USP54-207ENST00000451492 GAS2L2Q8NHY3 880 aa12.95□□□□□ -0.34
USP54-207ENST00000451492 PHACTR3Q96KR7 559 aa12.95□□□□□ -0.34
USP54-207ENST00000451492 WWC3Q9ULE0 1092 aa12.95□□□□□ -0.34
USP54-207ENST00000451492 CNTNAP4Q9C0A0 1308 aa12.94□□□□□ -0.34
USP54-207ENST00000451492 GNAT3A8MTJ3 354 aa12.94□□□□□ -0.34
USP54-207ENST00000451492 CRKLP46109 303 aaKnown RBP12.94□□□□□ -0.34
USP54-207ENST00000451492 TEFQ10587 303 aa12.94□□□□□ -0.34
USP54-207ENST00000451492 GPR162Q16538 588 aa12.94□□□□□ -0.34
USP54-207ENST00000451492 DNAJC10Q8IXB1 793 aa12.94□□□□□ -0.34
USP54-207ENST00000451492 TRAPPC3LQ5T215 181 aa12.93□□□□□ -0.34
USP54-207ENST00000451492 KIF13BQ9NQT8 1826 aa12.92□□□□□ -0.34
USP54-207ENST00000451492 RFC4P35249 363 aa12.92□□□□□ -0.34
USP54-207ENST00000451492 TTC5Q8N0Z6 440 aa12.92□□□□□ -0.34
USP54-207ENST00000451492 ARHGEF1Q92888 912 aaKnown RBP12.92□□□□□ -0.34
USP54-207ENST00000451492 KIAA1551Q9HCM1 1747 aa12.92□□□□□ -0.34
USP54-207ENST00000451492 MMP10P09238 476 aa12.91□□□□□ -0.34
USP54-207ENST00000451492 MCM10Q7L590 875 aa12.91□□□□□ -0.34
USP54-207ENST00000451492 IL17REQ8NFR9 667 aa12.91□□□□□ -0.34
USP54-207ENST00000451492 SRP68Q9UHB9 627 aaKnown RBP12.91□□□□□ -0.34
USP54-207ENST00000451492 AFDNP55196 1824 aaKnown RBP12.9□□□□□ -0.34
USP54-207ENST00000451492 RPS6KA4O75676 772 aa12.9□□□□□ -0.34
USP54-207ENST00000451492 DCTN1Q14203 1278 aa12.9□□□□□ -0.34
USP54-207ENST00000451492 RC3H1Q5TC82 1133 aaKnown RBP12.9□□□□□ -0.34
USP54-207ENST00000451492 SCN7AQ01118 1682 aa12.89□□□□□ -0.35
USP54-207ENST00000451492 LAMB4A4D0S4 1761 aa12.89□□□□□ -0.35
USP54-207ENST00000451492 RTF1Q92541 710 aaKnown RBP12.89□□□□□ -0.35
USP54-207ENST00000451492 CCDC87Q9NVE4 849 aa12.89□□□□□ -0.35
USP54-207ENST00000451492 ZBTB1Q9Y2K1 713 aa12.89□□□□□ -0.35
USP54-207ENST00000451492 ZNF330Q9Y3S2 320 aaPredicted RBP12.89□□□□□ -0.35
USP54-207ENST00000451492 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
USP54-207ENST00000451492 NEFMP07197 916 aa12.88□□□□□ -0.35
USP54-207ENST00000451492 GYS1P13807 737 aa12.88□□□□□ -0.35
USP54-207ENST00000451492 ADRA2BP18089 450 aa12.88□□□□□ -0.35
USP54-207ENST00000451492 INTS5Q6P9B9 1019 aaKnown RBP12.88□□□□□ -0.35
USP54-207ENST00000451492 COL15A1P39059 1388 aa12.88□□□□□ -0.35
USP54-207ENST00000451492 BRCA1P38398 1863 aaKnown RBP12.88□□□□□ -0.35
USP54-207ENST00000451492 BCORQ6W2J9 1755 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 CEMIPQ8WUJ3 1361 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 HEG1Q9ULI3 1381 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 BTBD11A6QL63 1104 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 KCNQ3O43525 872 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 FCHSD2O94868 740 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 CYP19A1P11511 503 aaPredicted RBP12.87□□□□□ -0.35
USP54-207ENST00000451492 YBX3P16989 372 aaKnown RBP eCLIP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms