RNA–Protein interactions for RNA: ENST00000449918.1

CLTCL1-203, Transcript of clathrin heavy chain like 1, humanhuman

TSL 3

Gene CLTCL1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-203ENST00000449918 TUBGCP6Q96RT7 1819 aa23.44■■□□□ 1.34
CLTCL1-203ENST00000449918 HMOX1P09601 288 aa23.43■■□□□ 1.34
CLTCL1-203ENST00000449918 ITPK1Q13572 414 aa23.43■■□□□ 1.34
CLTCL1-203ENST00000449918 AKAP4Q5JQC9 854 aa23.43■■□□□ 1.34
CLTCL1-203ENST00000449918 KDM6AO15550 1401 aaPredicted RBP23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 PHF14O94880 888 aa23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 SSFA2P28290 1259 aa23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 RBM42Q9BTD8 480 aaKnown RBP23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 C4BP0C0L5 1744 aa23.42■■□□□ 1.34
CLTCL1-203ENST00000449918 MSL1Q68DK7 614 aa23.41■■□□□ 1.34
CLTCL1-203ENST00000449918 TAF1LQ8IZX4 1826 aa23.4■■□□□ 1.34
CLTCL1-203ENST00000449918 GNPATO15228 680 aa23.4■■□□□ 1.34
CLTCL1-203ENST00000449918 NFATC2IPQ8NCF5 419 aa23.4■■□□□ 1.34
CLTCL1-203ENST00000449918 COL24A1Q17RW2 1714 aa23.39■■□□□ 1.33
CLTCL1-203ENST00000449918 AMIGO3Q86WK7 504 aa23.38■■□□□ 1.33
CLTCL1-203ENST00000449918 U2SURPO15042 1029 aaKnown RBP23.36■■□□□ 1.33
CLTCL1-203ENST00000449918 GPR162Q16538 588 aa23.36■■□□□ 1.33
CLTCL1-203ENST00000449918 SMIM5Q71RC9 77 aa23.36■■□□□ 1.33
CLTCL1-203ENST00000449918 CFAP53Q96M91 514 aa23.36■■□□□ 1.33
CLTCL1-203ENST00000449918 SLC4A9Q96Q91 983 aa23.36■■□□□ 1.33
CLTCL1-203ENST00000449918 RC3H1Q5TC82 1133 aaKnown RBP23.35■■□□□ 1.33
CLTCL1-203ENST00000449918 RTCBQ9Y3I0 505 aaKnown RBP23.35■■□□□ 1.33
CLTCL1-203ENST00000449918 PTCD1O75127 700 aaKnown RBP23.34■■□□□ 1.33
CLTCL1-203ENST00000449918 MTHFSDQ2M296 383 aaKnown RBP23.34■■□□□ 1.33
CLTCL1-203ENST00000449918 TRAPPC3LQ5T215 181 aa23.34■■□□□ 1.33
CLTCL1-203ENST00000449918 SLC52A2Q9HAB3 445 aa23.33■■□□□ 1.33
CLTCL1-203ENST00000449918 LGR6Q9HBX8 967 aa23.33■■□□□ 1.33
CLTCL1-203ENST00000449918 CD2APQ9Y5K6 639 aa23.33■■□□□ 1.33
CLTCL1-203ENST00000449918 RNMTO43148 476 aaKnown RBP23.32■■□□□ 1.32
CLTCL1-203ENST00000449918 NLGN2Q8NFZ4 835 aa23.32■■□□□ 1.32
CLTCL1-203ENST00000449918 CNTNAP4Q9C0A0 1308 aa23.32■■□□□ 1.32
CLTCL1-203ENST00000449918 UBR3Q6ZT12 1888 aa23.31■■□□□ 1.32
CLTCL1-203ENST00000449918 ADRA2BP18089 450 aa23.31■■□□□ 1.32
CLTCL1-203ENST00000449918 PELP1Q8IZL8 1130 aaKnown RBP23.31■■□□□ 1.32
CLTCL1-203ENST00000449918 COL3A1P02461 1466 aaPredicted RBP23.3■■□□□ 1.32
CLTCL1-203ENST00000449918 RPS6KA4O75676 772 aa23.3■■□□□ 1.32
CLTCL1-203ENST00000449918 NUDCQ9Y266 331 aa23.3■■□□□ 1.32
CLTCL1-203ENST00000449918 ZNF831Q5JPB2 1677 aa23.29■■□□□ 1.32
CLTCL1-203ENST00000449918 GAS2L2Q8NHY3 880 aa23.29■■□□□ 1.32
CLTCL1-203ENST00000449918 PPP2R1AP30153 589 aa23.28■■□□□ 1.32
CLTCL1-203ENST00000449918 RFC4P35249 363 aa23.27■■□□□ 1.32
CLTCL1-203ENST00000449918 NLGN1Q8N2Q7 840 aa23.27■■□□□ 1.32
CLTCL1-203ENST00000449918 ARHGEF1Q92888 912 aaKnown RBP23.27■■□□□ 1.32
CLTCL1-203ENST00000449918 CRKLP46109 303 aaKnown RBP23.26■■□□□ 1.31
CLTCL1-203ENST00000449918 SCN11AQ9UI33 1791 aa23.25■■□□□ 1.31
CLTCL1-203ENST00000449918 GNAT3A8MTJ3 354 aa23.25■■□□□ 1.31
CLTCL1-203ENST00000449918 GRIN3BO60391 1043 aa23.25■■□□□ 1.31
CLTCL1-203ENST00000449918 MMP10P09238 476 aa23.23■■□□□ 1.31
CLTCL1-203ENST00000449918 SLC39A6Q13433 755 aa23.23■■□□□ 1.31
CLTCL1-203ENST00000449918 MRC1P22897 1456 aa23.23■■□□□ 1.31
CLTCL1-203ENST00000449918 U2AF1L5P0DN76 240 aaPredicted RBP23.22■■□□□ 1.31
CLTCL1-203ENST00000449918 PRKAR2BP31323 418 aa23.22■■□□□ 1.31
CLTCL1-203ENST00000449918 U2AF1Q01081 240 aaKnown RBP eCLIP23.22■■□□□ 1.31
CLTCL1-203ENST00000449918 UTRNP46939 3433 aa23.22■■□□□ 1.31
CLTCL1-203ENST00000449918 TEFQ10587 303 aa23.21■■□□□ 1.31
CLTCL1-203ENST00000449918 DNAJC10Q8IXB1 793 aa23.21■■□□□ 1.31
CLTCL1-203ENST00000449918 RSPH6AQ9H0K4 717 aa23.21■■□□□ 1.31
CLTCL1-203ENST00000449918 GYS1P13807 737 aa23.2■■□□□ 1.3
CLTCL1-203ENST00000449918 INTS5Q6P9B9 1019 aaKnown RBP23.2■■□□□ 1.3
CLTCL1-203ENST00000449918 TTC5Q8N0Z6 440 aa23.2■■□□□ 1.3
CLTCL1-203ENST00000449918 VSIG10Q8N0Z9 540 aa23.2■■□□□ 1.3
CLTCL1-203ENST00000449918 IL17REQ8NFR9 667 aa23.2■■□□□ 1.3
CLTCL1-203ENST00000449918 COL5A3P25940 1745 aaPredicted RBP23.19■■□□□ 1.3
CLTCL1-203ENST00000449918 FCHSD2O94868 740 aa23.19■■□□□ 1.3
CLTCL1-203ENST00000449918 YBX3P16989 372 aaKnown RBP eCLIP23.19■■□□□ 1.3
CLTCL1-203ENST00000449918 PHACTR3Q96KR7 559 aa23.19■■□□□ 1.3
CLTCL1-203ENST00000449918 CCDC87Q9NVE4 849 aa23.19■■□□□ 1.3
CLTCL1-203ENST00000449918 CYP19A1P11511 503 aaPredicted RBP23.18■■□□□ 1.3
CLTCL1-203ENST00000449918 ZNF784Q8NCA9 323 aaPredicted RBP23.17■■□□□ 1.3
CLTCL1-203ENST00000449918 PARP3Q9Y6F1 533 aa23.17■■□□□ 1.3
CLTCL1-203ENST00000449918 ADAMTS7Q9UKP4 1686 aa23.16■■□□□ 1.3
CLTCL1-203ENST00000449918 USP42Q9H9J4 1324 aaKnown RBP23.14■■□□□ 1.3
CLTCL1-203ENST00000449918 ZPR1O75312 459 aa23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 STARD3NLO95772 234 aa23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 ZNF790Q6PG37 636 aa23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 RTF1Q92541 710 aaKnown RBP23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 SRP68Q9UHB9 627 aaKnown RBP23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 CICQ96RK0 1608 aaPredicted RBP23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 MYH14Q7Z406 1995 aaKnown RBP23.14■■□□□ 1.29
CLTCL1-203ENST00000449918 TJP1Q07157 1748 aa23.13■■□□□ 1.29
CLTCL1-203ENST00000449918 KCPQ6ZWJ8 1503 aa23.13■■□□□ 1.29
CLTCL1-203ENST00000449918 TGFB2P61812 414 aa23.13■■□□□ 1.29
CLTCL1-203ENST00000449918 CHD4Q14839 1912 aa23.13■■□□□ 1.29
CLTCL1-203ENST00000449918 SOS1Q07889 1333 aaPredicted RBP23.12■■□□□ 1.29
CLTCL1-203ENST00000449918 TEX13AQ9BXU3 409 aaPredicted RBP23.12■■□□□ 1.29
CLTCL1-203ENST00000449918 CEMIPQ8WUJ3 1361 aa23.12■■□□□ 1.29
CLTCL1-203ENST00000449918 NEFMP07197 916 aa23.11■■□□□ 1.29
CLTCL1-203ENST00000449918 FKBP8Q14318 412 aa23.11■■□□□ 1.29
CLTCL1-203ENST00000449918 GOLGB1Q14789 3259 aaKnown RBP23.11■■□□□ 1.29
CLTCL1-203ENST00000449918 BTBD11A6QL63 1104 aa23.1■■□□□ 1.29
CLTCL1-203ENST00000449918 ZNF496Q96IT1 587 aaPredicted RBP23.1■■□□□ 1.29
CLTCL1-203ENST00000449918 FMNL2Q96PY5 1086 aa23.1■■□□□ 1.29
CLTCL1-203ENST00000449918 ZBTB1Q9Y2K1 713 aa23.1■■□□□ 1.29
CLTCL1-203ENST00000449918 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
CLTCL1-203ENST00000449918 USPL1Q5W0Q7 1092 aa23.09■■□□□ 1.29
CLTCL1-203ENST00000449918 VIRMAQ69YN4 1812 aaKnown RBP23.08■■□□□ 1.29
CLTCL1-203ENST00000449918 CANXP27824 592 aaKnown RBP23.08■■□□□ 1.29
CLTCL1-203ENST00000449918 NARFQ9UHQ1 456 aa23.08■■□□□ 1.29
CLTCL1-203ENST00000449918 HEG1Q9ULI3 1381 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms