RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 COL23A1Q86Y22 540 aaPredicted RBP9.64□□□□□ -0.87
VPS41-208ENST00000448833 KLHL34Q8N239 644 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 DCAF5Q96JK2 942 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 CD2APQ9Y5K6 639 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 TOGARAM1Q9Y4F4 1720 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 ZNF831Q5JPB2 1677 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 UBR3Q6ZT12 1888 aa9.64□□□□□ -0.87
VPS41-208ENST00000448833 IGSF1Q8N6C5 1336 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 UTRNP46939 3433 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 LOC102724428A0A0B4J2F2 783 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 SSFA2P28290 1259 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 SIK1P57059 783 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 C1orf141Q5JVX7 400 aa9.63□□□□□ -0.87
VPS41-208ENST00000448833 ATP6V1AP38606 617 aa9.62□□□□□ -0.87
VPS41-208ENST00000448833 GOLGB1Q14789 3259 aaKnown RBP9.62□□□□□ -0.87
VPS41-208ENST00000448833 MTHFSP49914 203 aa9.61□□□□□ -0.87
VPS41-208ENST00000448833 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.6□□□□□ -0.87
VPS41-208ENST00000448833 CABP4P57796 275 aa9.6□□□□□ -0.87
VPS41-208ENST00000448833 RC3H1Q5TC82 1133 aaKnown RBP9.6□□□□□ -0.87
VPS41-208ENST00000448833 ZNF530Q6P9A1 599 aaPredicted RBP9.6□□□□□ -0.87
VPS41-208ENST00000448833 PELP1Q8IZL8 1130 aaKnown RBP9.6□□□□□ -0.87
VPS41-208ENST00000448833 ZNF784Q8NCA9 323 aaPredicted RBP9.6□□□□□ -0.87
VPS41-208ENST00000448833 ATG3Q9NT62 314 aa9.6□□□□□ -0.87
VPS41-208ENST00000448833 ASAP1Q9ULH1 1129 aa9.6□□□□□ -0.87
VPS41-208ENST00000448833 ATXN8OSP0DMR3 200 aa9.59□□□□□ -0.87
VPS41-208ENST00000448833 TRAPPC3LQ5T215 181 aa9.59□□□□□ -0.87
VPS41-208ENST00000448833 SULT6B1Q6IMI4 303 aa9.59□□□□□ -0.87
VPS41-208ENST00000448833 NLGN1Q8N2Q7 840 aa9.59□□□□□ -0.87
VPS41-208ENST00000448833 RTCBQ9Y3I0 505 aaKnown RBP9.59□□□□□ -0.87
VPS41-208ENST00000448833 VIRMAQ69YN4 1812 aaKnown RBP9.59□□□□□ -0.88
VPS41-208ENST00000448833 SCN11AQ9UI33 1791 aa9.58□□□□□ -0.88
VPS41-208ENST00000448833 GNPATO15228 680 aa9.58□□□□□ -0.88
VPS41-208ENST00000448833 PHF14O94880 888 aa9.58□□□□□ -0.88
VPS41-208ENST00000448833 AMER1Q5JTC6 1135 aaPredicted RBP9.58□□□□□ -0.88
VPS41-208ENST00000448833 MSL1Q68DK7 614 aa9.58□□□□□ -0.88
VPS41-208ENST00000448833 RBM42Q9BTD8 480 aaKnown RBP9.58□□□□□ -0.88
VPS41-208ENST00000448833 U3KPZ7 1027 aaPredicted RBP9.58□□□□□ -0.88
VPS41-208ENST00000448833 KDRP35968 1356 aa9.58□□□□□ -0.88
VPS41-208ENST00000448833 IL13P35225 146 aa9.57□□□□□ -0.88
VPS41-208ENST00000448833 RFC4P35249 363 aa9.57□□□□□ -0.88
VPS41-208ENST00000448833 AKAP4Q5JQC9 854 aa9.57□□□□□ -0.88
VPS41-208ENST00000448833 LINC00116Q8NCU8 138 aa9.57□□□□□ -0.88
VPS41-208ENST00000448833 NLGN2Q8NFZ4 835 aa9.57□□□□□ -0.88
VPS41-208ENST00000448833 KIF7Q2M1P5 1343 aa9.56□□□□□ -0.88
VPS41-208ENST00000448833 CNTNAP4Q9C0A0 1308 aa9.56□□□□□ -0.88
VPS41-208ENST00000448833 COL5A3P25940 1745 aaPredicted RBP9.56□□□□□ -0.88
VPS41-208ENST00000448833 DIAPH1O60610 1272 aaKnown RBP9.56□□□□□ -0.88
VPS41-208ENST00000448833 RPS6KA4O75676 772 aa9.56□□□□□ -0.88
VPS41-208ENST00000448833 ITPK1Q13572 414 aa9.56□□□□□ -0.88
VPS41-208ENST00000448833 NFATC2IPQ8NCF5 419 aa9.56□□□□□ -0.88
VPS41-208ENST00000448833 NPC1L1Q9UHC9 1359 aa9.55□□□□□ -0.88
VPS41-208ENST00000448833 PER1O15534 1290 aaPredicted RBP9.55□□□□□ -0.88
VPS41-208ENST00000448833 TGFB2P61812 414 aa9.55□□□□□ -0.88
VPS41-208ENST00000448833 KIF13BQ9NQT8 1826 aa9.54□□□□□ -0.88
VPS41-208ENST00000448833 AEBP1Q8IUX7 1158 aa9.54□□□□□ -0.88
VPS41-208ENST00000448833 MYH14Q7Z406 1995 aaKnown RBP9.54□□□□□ -0.88
VPS41-208ENST00000448833 CICQ96RK0 1608 aaPredicted RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 PTCD1O75127 700 aaKnown RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 GIGYF1O75420 1035 aaPredicted RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 MMP10P09238 476 aa9.53□□□□□ -0.88
VPS41-208ENST00000448833 YBX3P16989 372 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS41-208ENST00000448833 C1QTNF8P60827 252 aa9.53□□□□□ -0.88
VPS41-208ENST00000448833 SAMD1Q6SPF0 538 aaPredicted RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 ARHGEF1Q92888 912 aaKnown RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 CCDC87Q9NVE4 849 aa9.53□□□□□ -0.88
VPS41-208ENST00000448833 PARP3Q9Y6F1 533 aa9.53□□□□□ -0.88
VPS41-208ENST00000448833 KDM6AO15550 1401 aaPredicted RBP9.53□□□□□ -0.88
VPS41-208ENST00000448833 CC2D1BQ5T0F9 858 aaKnown RBP9.52□□□□□ -0.89
VPS41-208ENST00000448833 AMIGO3Q86WK7 504 aa9.52□□□□□ -0.89
VPS41-208ENST00000448833 VSIG10Q8N0Z9 540 aa9.52□□□□□ -0.89
VPS41-208ENST00000448833 CFAP53Q96M91 514 aa9.52□□□□□ -0.89
VPS41-208ENST00000448833 SLC52A2Q9HAB3 445 aa9.52□□□□□ -0.89
VPS41-208ENST00000448833 ZPR1O75312 459 aa9.51□□□□□ -0.89
VPS41-208ENST00000448833 CRKLP46109 303 aaKnown RBP9.51□□□□□ -0.89
VPS41-208ENST00000448833 SLC4A9Q96Q91 983 aa9.51□□□□□ -0.89
VPS41-208ENST00000448833 C4AP0C0L4 1744 aa9.51□□□□□ -0.89
VPS41-208ENST00000448833 RNMTO43148 476 aaKnown RBP9.5□□□□□ -0.89
VPS41-208ENST00000448833 HMOX1P09601 288 aa9.5□□□□□ -0.89
VPS41-208ENST00000448833 GYS1P13807 737 aa9.5□□□□□ -0.89
VPS41-208ENST00000448833 GAS2L2Q8NHY3 880 aa9.5□□□□□ -0.89
VPS41-208ENST00000448833 TEX13AQ9BXU3 409 aaPredicted RBP9.5□□□□□ -0.89
VPS41-208ENST00000448833 GPBP1L1Q9HC44 474 aaPredicted RBP9.5□□□□□ -0.89
VPS41-208ENST00000448833 NUDCQ9Y266 331 aa9.5□□□□□ -0.89
VPS41-208ENST00000448833 N4BP2Q86UW6 1770 aaPredicted RBP9.5□□□□□ -0.89
VPS41-208ENST00000448833 TJP1Q07157 1748 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 GNAT3A8MTJ3 354 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 U2SURPO15042 1029 aaKnown RBP9.49□□□□□ -0.89
VPS41-208ENST00000448833 STARD3NLO95772 234 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 TEFQ10587 303 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 MTHFSDQ2M296 383 aaKnown RBP9.49□□□□□ -0.89
VPS41-208ENST00000448833 SMIM5Q71RC9 77 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 TTC5Q8N0Z6 440 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 LGR6Q9HBX8 967 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 ARFGEF1Q9Y6D6 1849 aa9.49□□□□□ -0.89
VPS41-208ENST00000448833 ADAMTS7Q9UKP4 1686 aa9.48□□□□□ -0.89
VPS41-208ENST00000448833 MRC1P22897 1456 aa9.48□□□□□ -0.89
VPS41-208ENST00000448833 NPM2Q86SE8 214 aaKnown RBP9.48□□□□□ -0.89
VPS41-208ENST00000448833 PIM2Q9P1W9 311 aa9.48□□□□□ -0.89
VPS41-208ENST00000448833 BRCA1P38398 1863 aaKnown RBP9.48□□□□□ -0.89
VPS41-208ENST00000448833 USP42Q9H9J4 1324 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms