RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ATP6V1AP38606 617 aa20.1■□□□□ 0.81
HMGN1-208ENST00000443046 ATG3Q9NT62 314 aa20.1■□□□□ 0.81
HMGN1-208ENST00000443046 PHKG2P15735 406 aa20.09■□□□□ 0.81
HMGN1-208ENST00000443046 TGFB2P61812 414 aa20.09■□□□□ 0.81
HMGN1-208ENST00000443046 CDCA8Q53HL2 280 aa20.09■□□□□ 0.81
HMGN1-208ENST00000443046 DNAJC5GQ8N7S2 189 aa20.09■□□□□ 0.81
HMGN1-208ENST00000443046 ZNF831Q5JPB2 1677 aa20.09■□□□□ 0.81
HMGN1-208ENST00000443046 N4BP2Q86UW6 1770 aaPredicted RBP20.08■□□□□ 0.81
HMGN1-208ENST00000443046 APLP1P51693 650 aa20.08■□□□□ 0.81
HMGN1-208ENST00000443046 IFNL2Q8IZJ0 200 aa20.08■□□□□ 0.81
HMGN1-208ENST00000443046 KDRP35968 1356 aa20.08■□□□□ 0.8
HMGN1-208ENST00000443046 TOMM70O94826 608 aa20.07■□□□□ 0.8
HMGN1-208ENST00000443046 C10orf71Q711Q0 1435 aa20.07■□□□□ 0.8
HMGN1-208ENST00000443046 PLEKHG2Q9H7P9 1386 aa20.07■□□□□ 0.8
HMGN1-208ENST00000443046 BRCA1P38398 1863 aaKnown RBP20.06■□□□□ 0.8
HMGN1-208ENST00000443046 SLC4A9Q96Q91 983 aa20.06■□□□□ 0.8
HMGN1-208ENST00000443046 A0A0G2JLW4 131 aa20.05■□□□□ 0.8
HMGN1-208ENST00000443046 NLGN1Q8N2Q7 840 aa20.05■□□□□ 0.8
HMGN1-208ENST00000443046 PPM1GO15355 546 aaPredicted RBP20.04■□□□□ 0.8
HMGN1-208ENST00000443046 TRAPPC3LQ5T215 181 aa20.04■□□□□ 0.8
HMGN1-208ENST00000443046 RC3H1Q5TC82 1133 aaKnown RBP20.04■□□□□ 0.8
HMGN1-208ENST00000443046 POLKQ9UBT6 870 aa20.04■□□□□ 0.8
HMGN1-208ENST00000443046 COL5A3P25940 1745 aaPredicted RBP20.03■□□□□ 0.8
HMGN1-208ENST00000443046 ADRA2BP18089 450 aa20.03■□□□□ 0.8
HMGN1-208ENST00000443046 BCS1LQ9Y276 419 aa20.03■□□□□ 0.8
HMGN1-208ENST00000443046 RTCBQ9Y3I0 505 aaKnown RBP20.03■□□□□ 0.8
HMGN1-208ENST00000443046 C4AP0C0L4 1744 aa20.02■□□□□ 0.8
HMGN1-208ENST00000443046 GYS1P13807 737 aa20.02■□□□□ 0.8
HMGN1-208ENST00000443046 ARHGEF1Q92888 912 aaKnown RBP20.02■□□□□ 0.8
HMGN1-208ENST00000443046 MYH14Q7Z406 1995 aaKnown RBP20.01■□□□□ 0.79
HMGN1-208ENST00000443046 ERVV-2B6SEH9 535 aa20.01■□□□□ 0.79
HMGN1-208ENST00000443046 DPEP1P16444 411 aa20.01■□□□□ 0.79
HMGN1-208ENST00000443046 KCNA3P22001 575 aa20.01■□□□□ 0.79
HMGN1-208ENST00000443046 CNTNAP4Q9C0A0 1308 aa20.01■□□□□ 0.79
HMGN1-208ENST00000443046 ARFGEF1Q9Y6D6 1849 aa20■□□□□ 0.79
HMGN1-208ENST00000443046 ARHGAP27Q6ZUM4 889 aa20■□□□□ 0.79
HMGN1-208ENST00000443046 NMRK2Q9NPI5 230 aa20■□□□□ 0.79
HMGN1-208ENST00000443046 RPS6KA4O75676 772 aa19.99■□□□□ 0.79
HMGN1-208ENST00000443046 EIF4A2Q14240 407 aaKnown RBP19.99■□□□□ 0.79
HMGN1-208ENST00000443046 CCDC87Q9NVE4 849 aa19.99■□□□□ 0.79
HMGN1-208ENST00000443046 RBM46Q8TBY0 533 aaKnown RBP19.97■□□□□ 0.79
HMGN1-208ENST00000443046 DCAF5Q96JK2 942 aa19.97■□□□□ 0.79
HMGN1-208ENST00000443046 WDR90Q96KV7 1748 aa19.96■□□□□ 0.79
HMGN1-208ENST00000443046 FCHSD2O94868 740 aa19.96■□□□□ 0.79
HMGN1-208ENST00000443046 RFC4P35249 363 aa19.96■□□□□ 0.79
HMGN1-208ENST00000443046 RBM42Q9BTD8 480 aaKnown RBP19.96■□□□□ 0.79
HMGN1-208ENST00000443046 C9orf131Q5VYM1 1079 aa19.95■□□□□ 0.78
HMGN1-208ENST00000443046 PARP3Q9Y6F1 533 aa19.95■□□□□ 0.78
HMGN1-208ENST00000443046 KDM6AO15550 1401 aaPredicted RBP19.94■□□□□ 0.78
HMGN1-208ENST00000443046 HSP90AB1P08238 724 aaKnown RBP19.94■□□□□ 0.78
HMGN1-208ENST00000443046 JMYQ8N9B5 988 aa19.92■□□□□ 0.78
HMGN1-208ENST00000443046 PIM2Q9P1W9 311 aa19.92■□□□□ 0.78
HMGN1-208ENST00000443046 SBF1O95248 1867 aa19.91■□□□□ 0.78
HMGN1-208ENST00000443046 FSTL1Q12841 308 aa19.91■□□□□ 0.78
HMGN1-208ENST00000443046 PLEKHO1Q53GL0 409 aaPredicted RBP19.91■□□□□ 0.78
HMGN1-208ENST00000443046 KLRG1Q96E93 195 aa19.91■□□□□ 0.78
HMGN1-208ENST00000443046 DDR1Q08345 913 aa19.9■□□□□ 0.78
HMGN1-208ENST00000443046 ADAMTS7Q9UKP4 1686 aa19.9■□□□□ 0.78
HMGN1-208ENST00000443046 CRKLP46109 303 aaKnown RBP19.89■□□□□ 0.77
HMGN1-208ENST00000443046 CABP4P57796 275 aa19.89■□□□□ 0.77
HMGN1-208ENST00000443046 FKBP8Q14318 412 aa19.89■□□□□ 0.77
HMGN1-208ENST00000443046 AMOTQ4VCS5 1084 aa19.89■□□□□ 0.77
HMGN1-208ENST00000443046 DALRD3Q5D0E6 543 aaKnown RBP19.89■□□□□ 0.77
HMGN1-208ENST00000443046 KCPQ6ZWJ8 1503 aa19.89■□□□□ 0.77
HMGN1-208ENST00000443046 USP42Q9H9J4 1324 aaKnown RBP19.89■□□□□ 0.77
HMGN1-208ENST00000443046 TJP1Q07157 1748 aa19.88■□□□□ 0.77
HMGN1-208ENST00000443046 HTRA3P83110 453 aa19.88■□□□□ 0.77
HMGN1-208ENST00000443046 ZNF530Q6P9A1 599 aaPredicted RBP19.88■□□□□ 0.77
HMGN1-208ENST00000443046 SRP68Q9UHB9 627 aaKnown RBP19.88■□□□□ 0.77
HMGN1-208ENST00000443046 KDM2BQ8NHM5 1336 aa19.87■□□□□ 0.77
HMGN1-208ENST00000443046 TM4SF1P30408 202 aa19.87■□□□□ 0.77
HMGN1-208ENST00000443046 TNNT2P45379 298 aaPredicted RBP19.87■□□□□ 0.77
HMGN1-208ENST00000443046 PTCD1O75127 700 aaKnown RBP19.86■□□□□ 0.77
HMGN1-208ENST00000443046 C16orf71Q8IYS4 520 aaPredicted RBP19.86■□□□□ 0.77
HMGN1-208ENST00000443046 NFATC2IPQ8NCF5 419 aa19.86■□□□□ 0.77
HMGN1-208ENST00000443046 TNRC6CQ9HCJ0 1690 aaKnown RBP19.86■□□□□ 0.77
HMGN1-208ENST00000443046 POLRMTO00411 1230 aaKnown RBP19.85■□□□□ 0.77
HMGN1-208ENST00000443046 CHRNA5P30532 468 aa19.85■□□□□ 0.77
HMGN1-208ENST00000443046 MTHFSP49914 203 aa19.85■□□□□ 0.77
HMGN1-208ENST00000443046 COL13A1Q5TAT6 717 aaPredicted RBP19.85■□□□□ 0.77
HMGN1-208ENST00000443046 INTS5Q6P9B9 1019 aaKnown RBP19.85■□□□□ 0.77
HMGN1-208ENST00000443046 RRAGCQ9HB90 399 aa19.85■□□□□ 0.77
HMGN1-208ENST00000443046 RNF181Q9P0P0 153 aa19.85■□□□□ 0.77
HMGN1-208ENST00000443046 AEBP1Q8IUX7 1158 aa19.83■□□□□ 0.77
HMGN1-208ENST00000443046 SCN11AQ9UI33 1791 aa19.83■□□□□ 0.76
HMGN1-208ENST00000443046 ZC3H4Q9UPT8 1303 aaKnown RBP19.81■□□□□ 0.76
HMGN1-208ENST00000443046 C1orf141Q5JVX7 400 aa19.81■□□□□ 0.76
HMGN1-208ENST00000443046 TIMELESSQ9UNS1 1208 aa19.81■□□□□ 0.76
HMGN1-208ENST00000443046 NRXN2Q9P2S2 1712 aa19.8■□□□□ 0.76
HMGN1-208ENST00000443046 AFDNP55196 1824 aaKnown RBP19.8■□□□□ 0.76
HMGN1-208ENST00000443046 USPL1Q5W0Q7 1092 aa19.79■□□□□ 0.76
HMGN1-208ENST00000443046 SMC1BQ8NDV3 1235 aa19.79■□□□□ 0.76
HMGN1-208ENST00000443046 SOS1Q07889 1333 aaPredicted RBP19.78■□□□□ 0.76
HMGN1-208ENST00000443046 DLEC1Q9Y238 1755 aa19.78■□□□□ 0.76
HMGN1-208ENST00000443046 PRELPP51888 382 aa19.78■□□□□ 0.76
HMGN1-208ENST00000443046 ZPR1O75312 459 aa19.77■□□□□ 0.76
HMGN1-208ENST00000443046 SULT6B1Q6IMI4 303 aa19.77■□□□□ 0.76
HMGN1-208ENST00000443046 DNAJC10Q8IXB1 793 aa19.77■□□□□ 0.76
HMGN1-208ENST00000443046 PANK3Q9H999 370 aa19.77■□□□□ 0.76
HMGN1-208ENST00000443046 CYP19A1P11511 503 aaPredicted RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms