RNA–Protein interactions for RNA: ENST00000442461.6

LIN54-202, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-202ENST00000442461 TMCO5BA8MYB1 307 aa12□□□□□ -0.49
LIN54-202ENST00000442461 DHX16O60231 1041 aaKnown RBP12□□□□□ -0.49
LIN54-202ENST00000442461 INPP5BP32019 993 aa12□□□□□ -0.49
LIN54-202ENST00000442461 G3BP1Q13283 466 aaKnown RBP eCLIP12□□□□□ -0.49
LIN54-202ENST00000442461 HDAC1Q13547 482 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 AP1ARQ63HQ0 302 aa12□□□□□ -0.49
LIN54-202ENST00000442461 NEK11Q8NG66 645 aa12□□□□□ -0.49
LIN54-202ENST00000442461 LUC7LQ9NQ29 371 aaKnown RBP12□□□□□ -0.49
LIN54-202ENST00000442461 MAP2K1Q02750 393 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 ICE2Q659A1 982 aa12□□□□□ -0.49
LIN54-202ENST00000442461 HDXQ7Z353 690 aa12□□□□□ -0.49
LIN54-202ENST00000442461 C9orf78Q9NZ63 289 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 UBTFL1P0CB47 393 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 ZSCAN22P10073 491 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 EVCP57679 992 aa12□□□□□ -0.49
LIN54-202ENST00000442461 TWISTNBQ3B726 338 aaPredicted RBP12□□□□□ -0.49
LIN54-202ENST00000442461 CCDC114Q96M63 670 aa12□□□□□ -0.49
LIN54-202ENST00000442461 ARAP1Q96P48 1450 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 CTAGE15A4D2H0 777 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 CTAGE8P0CG41 777 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 OAS2P29728 719 aaKnown RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 CTAGE6Q86UF2 777 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 CTAGE4Q8IX94 777 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 SCAPERQ9BY12 1400 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 GTF2E1P29083 439 aaPredicted RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 TYRO3Q06418 890 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 IMMTQ16891 758 aaKnown RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 RALYLQ86SE5 291 aaKnown RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 ANKRD18AQ8IVF6 992 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 TEX2Q8IWB9 1127 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 CEP112Q8N8E3 955 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 MAGEC2Q9UBF1 373 aaPredicted RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 GNAI2P04899 355 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 ENOX2Q16206 610 aaKnown RBP11.99□□□□□ -0.49
LIN54-202ENST00000442461 NUP133Q8WUM0 1156 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 ATRIPQ8WXE1 791 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 FSD1Q9BTV5 496 aa11.99□□□□□ -0.49
LIN54-202ENST00000442461 BCCIPQ9P287 314 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIN54-202ENST00000442461 SCLT1Q96NL6 688 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 CNPY2Q9Y2B0 182 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 TOP2AP11388 1531 aaKnown RBP11.98□□□□□ -0.49
LIN54-202ENST00000442461 EIF5P55010 431 aaKnown RBP11.98□□□□□ -0.49
LIN54-202ENST00000442461 CCDC121Q6ZUS5 278 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 GOLGA5Q8TBA6 731 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 LMBRD1Q9NUN5 540 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 TFIP11Q9UBB9 837 aaKnown RBP11.98□□□□□ -0.49
LIN54-202ENST00000442461 TERF2Q15554 542 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 B4GALNT4Q76KP1 1039 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 SSH1Q8WYL5 1049 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 MRVI1Q9Y6F6 885 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 WIZO95785 1651 aa11.98□□□□□ -0.49
LIN54-202ENST00000442461 EVC2Q86UK5 1308 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 SMARCA2P51531 1590 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 SPECC1LQ69YQ0 1117 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.97□□□□□ -0.49
LIN54-202ENST00000442461 OPA1O60313 960 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 PAFAH1B1P43034 410 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 IRX5P78411 483 aaPredicted RBP11.97□□□□□ -0.49
LIN54-202ENST00000442461 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.97□□□□□ -0.495e-6■■■□□ 15.5
LIN54-202ENST00000442461 CCDC9Q9Y3X0 531 aaKnown RBP11.97□□□□□ -0.49
LIN54-202ENST00000442461 ATP2C2O75185 946 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 NPM1P06748 294 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIN54-202ENST00000442461 NUCB1Q02818 461 aa11.97□□□□□ -0.49
LIN54-202ENST00000442461 SMC1AQ14683 1233 aaKnown RBP11.97□□□□□ -0.49
LIN54-202ENST00000442461 MSL1Q68DK7 614 aa11.96□□□□□ -0.49
LIN54-202ENST00000442461 NFXL1Q6ZNB6 911 aa11.96□□□□□ -0.49
LIN54-202ENST00000442461 DNAJC25Q9H1X3 360 aa11.96□□□□□ -0.49
LIN54-202ENST00000442461 RRP15Q9Y3B9 282 aaKnown RBP11.96□□□□□ -0.49
LIN54-202ENST00000442461 HNRNPH2P55795 449 aaKnown RBP11.96□□□□□ -0.49
LIN54-202ENST00000442461 ZGPATQ8N5A5 531 aaKnown RBP11.96□□□□□ -0.49
LIN54-202ENST00000442461 DACT1Q9NYF0 836 aa11.96□□□□□ -0.49
LIN54-202ENST00000442461 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
LIN54-202ENST00000442461 GCKP35557 465 aa11.96□□□□□ -0.5
LIN54-202ENST00000442461 PPP2R3AQ06190 1150 aa11.96□□□□□ -0.5
LIN54-202ENST00000442461 PPP2R5AQ15172 486 aa11.96□□□□□ -0.5
LIN54-202ENST00000442461 FAM76AQ8TAV0 307 aa11.96□□□□□ -0.5
LIN54-202ENST00000442461 ZNF215Q9UL58 517 aaPredicted RBP11.96□□□□□ -0.5
LIN54-202ENST00000442461 EIF4G1Q04637 1599 aaKnown RBP11.96□□□□□ -0.5
LIN54-202ENST00000442461 MARCH6O60337 910 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 TRIM27P14373 513 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 TMEM63CQ9P1W3 806 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 VGFO15240 615 aaPredicted RBP11.95□□□□□ -0.5
LIN54-202ENST00000442461 HSF2BPO75031 334 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 KIF5BP33176 963 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 CTCFLQ8NI51 663 aaPredicted RBP11.95□□□□□ -0.5
LIN54-202ENST00000442461 AFAP1L1Q8TED9 768 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 GPRASP1Q5JY77 1395 aa11.95□□□□□ -0.5
LIN54-202ENST00000442461 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIN54-202ENST00000442461 SLC3A2P08195 630 aaKnown RBP11.94□□□□□ -0.5
LIN54-202ENST00000442461 ATP2B1P20020 1258 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 ANTXR1Q9H6X2 564 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 ZSCAN20P17040 1043 aaPredicted RBP11.94□□□□□ -0.5
LIN54-202ENST00000442461 GJB2P29033 226 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 HNRNPMP52272 730 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIN54-202ENST00000442461 RBBP5Q15291 538 aaKnown RBP11.94□□□□□ -0.5
LIN54-202ENST00000442461 GIGYF2Q6Y7W6 1299 aaKnown RBP11.94□□□□□ -0.5
LIN54-202ENST00000442461 CCDC50Q8IVM0 306 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 FSIP1Q8NA03 581 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 HYPKQ9NX55 129 aa11.94□□□□□ -0.5
LIN54-202ENST00000442461 SRGAP3O43295 1099 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms