RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 GNPATO15228 680 aa16■□□□□ 0.15
TTC28-203ENST00000442232 CABP4P57796 275 aa16■□□□□ 0.15
TTC28-203ENST00000442232 LINC00116Q8NCU8 138 aa16■□□□□ 0.15
TTC28-203ENST00000442232 SULT6B1Q6IMI4 303 aa15.99■□□□□ 0.15
TTC28-203ENST00000442232 ZNF784Q8NCA9 323 aaPredicted RBP15.99■□□□□ 0.15
TTC28-203ENST00000442232 RBM42Q9BTD8 480 aaKnown RBP15.99■□□□□ 0.15
TTC28-203ENST00000442232 ATG3Q9NT62 314 aa15.99■□□□□ 0.15
TTC28-203ENST00000442232 GRIN3BO60391 1043 aa15.98■□□□□ 0.15
TTC28-203ENST00000442232 COL5A3P25940 1745 aaPredicted RBP15.98■□□□□ 0.15
TTC28-203ENST00000442232 MTHFSP49914 203 aa15.98■□□□□ 0.15
TTC28-203ENST00000442232 AEBP1Q8IUX7 1158 aa15.98■□□□□ 0.15
TTC28-203ENST00000442232 CD2APQ9Y5K6 639 aa15.98■□□□□ 0.15
TTC28-203ENST00000442232 KDM6AO15550 1401 aaPredicted RBP15.97■□□□□ 0.15
TTC28-203ENST00000442232 ITPK1Q13572 414 aa15.97■□□□□ 0.15
TTC28-203ENST00000442232 AMER1Q5JTC6 1135 aaPredicted RBP15.97■□□□□ 0.15
TTC28-203ENST00000442232 SCN11AQ9UI33 1791 aa15.97■□□□□ 0.15
TTC28-203ENST00000442232 KDRP35968 1356 aa15.97■□□□□ 0.15
TTC28-203ENST00000442232 RTCBQ9Y3I0 505 aaKnown RBP15.96■□□□□ 0.15
TTC28-203ENST00000442232 VIRMAQ69YN4 1812 aaKnown RBP15.96■□□□□ 0.14
TTC28-203ENST00000442232 IL13P35225 146 aa15.95■□□□□ 0.14
TTC28-203ENST00000442232 CC2D1BQ5T0F9 858 aaKnown RBP15.94■□□□□ 0.14
TTC28-203ENST00000442232 AMIGO3Q86WK7 504 aa15.94■□□□□ 0.14
TTC28-203ENST00000442232 UTRNP46939 3433 aa15.93■□□□□ 0.14
TTC28-203ENST00000442232 TRAPPC3LQ5T215 181 aa15.93■□□□□ 0.14
TTC28-203ENST00000442232 SMIM5Q71RC9 77 aa15.93■□□□□ 0.14
TTC28-203ENST00000442232 CNTNAP4Q9C0A0 1308 aa15.93■□□□□ 0.14
TTC28-203ENST00000442232 YBX3P16989 372 aaKnown RBP eCLIP15.92■□□□□ 0.14
TTC28-203ENST00000442232 ADRA2BP18089 450 aa15.92■□□□□ 0.14
TTC28-203ENST00000442232 AKAP4Q5JQC9 854 aa15.92■□□□□ 0.14
TTC28-203ENST00000442232 RC3H1Q5TC82 1133 aaKnown RBP15.92■□□□□ 0.14
TTC28-203ENST00000442232 DIAPH1O60610 1272 aaKnown RBP15.91■□□□□ 0.14
TTC28-203ENST00000442232 PTCD1O75127 700 aaKnown RBP15.91■□□□□ 0.14
TTC28-203ENST00000442232 NFATC2IPQ8NCF5 419 aa15.91■□□□□ 0.14
TTC28-203ENST00000442232 C4AP0C0L4 1744 aa15.91■□□□□ 0.14
TTC28-203ENST00000442232 CICQ96RK0 1608 aaPredicted RBP15.9■□□□□ 0.14
TTC28-203ENST00000442232 MMP10P09238 476 aa15.9■□□□□ 0.14
TTC28-203ENST00000442232 HMOX1P09601 288 aa15.9■□□□□ 0.14
TTC28-203ENST00000442232 RFC4P35249 363 aa15.9■□□□□ 0.14
TTC28-203ENST00000442232 CNGB1Q14028 1251 aaPredicted RBP15.9■□□□□ 0.14
TTC28-203ENST00000442232 NLGN1Q8N2Q7 840 aa15.9■□□□□ 0.14
TTC28-203ENST00000442232 TJP1Q07157 1748 aa15.9■□□□□ 0.14
TTC28-203ENST00000442232 NPC1L1Q9UHC9 1359 aa15.89■□□□□ 0.13
TTC28-203ENST00000442232 SLC4A9Q96Q91 983 aa15.89■□□□□ 0.13
TTC28-203ENST00000442232 MYH14Q7Z406 1995 aaKnown RBP15.89■□□□□ 0.13
TTC28-203ENST00000442232 PER1O15534 1290 aaPredicted RBP15.88■□□□□ 0.13
TTC28-203ENST00000442232 RPS6KA4O75676 772 aa15.88■□□□□ 0.13
TTC28-203ENST00000442232 KIF13BQ9NQT8 1826 aa15.88■□□□□ 0.13
TTC28-203ENST00000442232 MRC1P22897 1456 aa15.88■□□□□ 0.13
TTC28-203ENST00000442232 GIGYF1O75420 1035 aaPredicted RBP15.87■□□□□ 0.13
TTC28-203ENST00000442232 CRKLP46109 303 aaKnown RBP15.87■□□□□ 0.13
TTC28-203ENST00000442232 ARHGEF1Q92888 912 aaKnown RBP15.87■□□□□ 0.13
TTC28-203ENST00000442232 SLC52A2Q9HAB3 445 aa15.87■□□□□ 0.13
TTC28-203ENST00000442232 U2SURPO15042 1029 aaKnown RBP15.86■□□□□ 0.13
TTC28-203ENST00000442232 CCDC87Q9NVE4 849 aa15.86■□□□□ 0.13
TTC28-203ENST00000442232 PARP3Q9Y6F1 533 aa15.86■□□□□ 0.13
TTC28-203ENST00000442232 N4BP2Q86UW6 1770 aaPredicted RBP15.85■□□□□ 0.13
TTC28-203ENST00000442232 RNMTO43148 476 aaKnown RBP15.85■□□□□ 0.13
TTC28-203ENST00000442232 CFAP53Q96M91 514 aa15.85■□□□□ 0.13
TTC28-203ENST00000442232 WWC3Q9ULE0 1092 aa15.85■□□□□ 0.13
TTC28-203ENST00000442232 GOLGB1Q14789 3259 aaKnown RBP15.85■□□□□ 0.13
TTC28-203ENST00000442232 ADAMTS7Q9UKP4 1686 aa15.84■□□□□ 0.13
TTC28-203ENST00000442232 GYS1P13807 737 aa15.84■□□□□ 0.13
TTC28-203ENST00000442232 C10orf71Q711Q0 1435 aa15.84■□□□□ 0.13
TTC28-203ENST00000442232 COL3A1P02461 1466 aaPredicted RBP15.84■□□□□ 0.13
TTC28-203ENST00000442232 C1QTNF8P60827 252 aa15.83■□□□□ 0.12
TTC28-203ENST00000442232 TGFB2P61812 414 aa15.83■□□□□ 0.12
TTC28-203ENST00000442232 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
TTC28-203ENST00000442232 LGR6Q9HBX8 967 aa15.83■□□□□ 0.12
TTC28-203ENST00000442232 ATP10DQ9P241 1426 aa15.83■□□□□ 0.12
TTC28-203ENST00000442232 PXDNLA1KZ92 1463 aa15.83■□□□□ 0.12
TTC28-203ENST00000442232 TTC5Q8N0Z6 440 aa15.82■□□□□ 0.12
TTC28-203ENST00000442232 GAS2L2Q8NHY3 880 aa15.82■□□□□ 0.12
TTC28-203ENST00000442232 KIAA1551Q9HCM1 1747 aa15.82■□□□□ 0.12
TTC28-203ENST00000442232 SENP3-EIF4A1A0A087X0R7 540 aa15.81■□□□□ 0.12
TTC28-203ENST00000442232 ZPR1O75312 459 aa15.81■□□□□ 0.12
TTC28-203ENST00000442232 TEFQ10587 303 aa15.81■□□□□ 0.12
TTC28-203ENST00000442232 UBR2Q8IWV8 1755 aa15.81■□□□□ 0.12
TTC28-203ENST00000442232 DNAJC10Q8IXB1 793 aa15.81■□□□□ 0.12
TTC28-203ENST00000442232 USP42Q9H9J4 1324 aaKnown RBP15.81■□□□□ 0.12
TTC28-203ENST00000442232 KCPQ6ZWJ8 1503 aa15.8■□□□□ 0.12
TTC28-203ENST00000442232 SLC39A6Q13433 755 aa15.8■□□□□ 0.12
TTC28-203ENST00000442232 SRP68Q9UHB9 627 aaKnown RBP15.8■□□□□ 0.12
TTC28-203ENST00000442232 NUDCQ9Y266 331 aa15.8■□□□□ 0.12
TTC28-203ENST00000442232 GNAT3A8MTJ3 354 aa15.79■□□□□ 0.12
TTC28-203ENST00000442232 GPBP1L1Q9HC44 474 aaPredicted RBP15.79■□□□□ 0.12
TTC28-203ENST00000442232 BCS1LQ9Y276 419 aa15.79■□□□□ 0.12
TTC28-203ENST00000442232 BRCA1P38398 1863 aaKnown RBP15.78■□□□□ 0.12
TTC28-203ENST00000442232 A0A0G2JLW4 131 aa15.78■□□□□ 0.12
TTC28-203ENST00000442232 INTS5Q6P9B9 1019 aaKnown RBP15.78■□□□□ 0.12
TTC28-203ENST00000442232 ARFGEF1Q9Y6D6 1849 aa15.78■□□□□ 0.12
TTC28-203ENST00000442232 SIPA1L3O60292 1781 aaPredicted RBP15.77■□□□□ 0.12
TTC28-203ENST00000442232 ADCY9O60503 1353 aa15.77■□□□□ 0.12
TTC28-203ENST00000442232 COL15A1P39059 1388 aa15.77■□□□□ 0.12
TTC28-203ENST00000442232 SOS1Q07889 1333 aaPredicted RBP15.77■□□□□ 0.12
TTC28-203ENST00000442232 CYP19A1P11511 503 aaPredicted RBP15.77■□□□□ 0.12
TTC28-203ENST00000442232 VSIG10Q8N0Z9 540 aa15.77■□□□□ 0.12
TTC28-203ENST00000442232 FCHSD2O94868 740 aa15.76■□□□□ 0.11
TTC28-203ENST00000442232 STARD3NLO95772 234 aa15.76■□□□□ 0.11
TTC28-203ENST00000442232 FKBP8Q14318 412 aa15.76■□□□□ 0.11
TTC28-203ENST00000442232 USPL1Q5W0Q7 1092 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms