RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PTF1AQ7RTS3 328 aa10.68□□□□□ -0.7
CD44-211ENST00000442151 SMARCC1Q92922 1105 aaPredicted RBP10.68□□□□□ -0.7
CD44-211ENST00000442151 POLR3GLQ9BT43 218 aa10.68□□□□□ -0.7
CD44-211ENST00000442151 PCDH11XQ9BZA7 1347 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 PCDH11YQ9BZA8 1340 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 NBPF6Q5VWK0 638 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 FLAD1Q8NFF5 587 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 NBPF4Q96M43 638 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 ANO8Q9HCE9 1232 aaPredicted RBP10.67□□□□□ -0.7
CD44-211ENST00000442151 KAT6BQ8WYB5 2073 aa10.67□□□□□ -0.7
CD44-211ENST00000442151 PPM1GO15355 546 aaPredicted RBP10.66□□□□□ -0.7
CD44-211ENST00000442151 ZBTB7AO95365 584 aa10.66□□□□□ -0.7
CD44-211ENST00000442151 PLCG2P16885 1265 aa10.66□□□□□ -0.7
CD44-211ENST00000442151 HSP90AB2PQ58FF8 381 aa10.66□□□□□ -0.7
CD44-211ENST00000442151 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.66□□□□□ -0.7
CD44-211ENST00000442151 NSD3Q9BZ95 1437 aa10.66□□□□□ -0.7
CD44-211ENST00000442151 WASHC2AQ641Q2 1341 aa10.66□□□□□ -0.7
CD44-211ENST00000442151 CARD14Q9BXL6 1004 aa10.65□□□□□ -0.7
CD44-211ENST00000442151 TFCP2L1Q9NZI6 479 aa10.65□□□□□ -0.7
CD44-211ENST00000442151 KRTAP3-3Q9BYR6 98 aa10.65□□□□□ -0.71
CD44-211ENST00000442151 KRTAP3-2Q9BYR7 98 aa10.65□□□□□ -0.71
CD44-211ENST00000442151 FBLN1P23142 703 aa10.64□□□□□ -0.71
CD44-211ENST00000442151 ARXQ96QS3 562 aa10.64□□□□□ -0.71
CD44-211ENST00000442151 CCNL1Q9UK58 526 aaPredicted RBP10.64□□□□□ -0.71
CD44-211ENST00000442151 PLEKHG2Q9H7P9 1386 aa10.64□□□□□ -0.71
CD44-211ENST00000442151 YY1P25490 414 aa10.63□□□□□ -0.71
CD44-211ENST00000442151 SGIP1Q9BQI5 828 aa10.63□□□□□ -0.71
CD44-211ENST00000442151 NSD2O96028 1365 aa10.63□□□□□ -0.71
CD44-211ENST00000442151 KIF20BQ96Q89 1820 aa10.63□□□□□ -0.71
CD44-211ENST00000442151 HSP90AB1P08238 724 aaKnown RBP10.63□□□□□ -0.71
CD44-211ENST00000442151 HSPA5P11021 654 aaKnown RBP10.63□□□□□ -0.71
CD44-211ENST00000442151 SPDYE4A6NLX3 237 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 EMP3P54852 163 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 IFNL2Q8IZJ0 200 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 USHBP1Q8N6Y0 703 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 KNSTRNQ9Y448 316 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 BTAF1O14981 1849 aa10.62□□□□□ -0.71
CD44-211ENST00000442151 PTGER2P43116 358 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 NKX1-1Q15270 411 aaPredicted RBP10.61□□□□□ -0.71
CD44-211ENST00000442151 PANK3Q9H999 370 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 LRRC4BQ9NT99 713 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 EMILIN1Q9Y6C2 1016 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 PLEKHO1Q53GL0 409 aaPredicted RBP10.61□□□□□ -0.71
CD44-211ENST00000442151 MPRIPQ6WCQ1 1025 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 MORC1Q86VD1 984 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 SYT17Q9BSW7 474 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 POLKQ9UBT6 870 aa10.61□□□□□ -0.71
CD44-211ENST00000442151 CASZ1Q86V15 1759 aa10.6□□□□□ -0.71
CD44-211ENST00000442151 AMOTQ4VCS5 1084 aa10.6□□□□□ -0.71
CD44-211ENST00000442151 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.6□□□□□ -0.71
CD44-211ENST00000442151 MEGF6O75095 1541 aa10.6□□□□□ -0.71
CD44-211ENST00000442151 MAP3K5Q99683 1374 aa10.59□□□□□ -0.71
CD44-211ENST00000442151 EYA1Q99502 592 aa10.59□□□□□ -0.71
CD44-211ENST00000442151 FHDC1Q9C0D6 1143 aaPredicted RBP10.59□□□□□ -0.71
CD44-211ENST00000442151 TMOD3Q9NYL9 352 aa10.59□□□□□ -0.71
CD44-211ENST00000442151 ZNF827Q17R98 1081 aa10.58□□□□□ -0.72
CD44-211ENST00000442151 AK7Q96M32 723 aa10.58□□□□□ -0.72
CD44-211ENST00000442151 PDGFDQ9GZP0 370 aaPredicted RBP10.58□□□□□ -0.72
CD44-211ENST00000442151 ERVV-2B6SEH9 535 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 CYP27B1O15528 508 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 TNNT2P45379 298 aaPredicted RBP10.57□□□□□ -0.72
CD44-211ENST00000442151 GPR162Q16538 588 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 HS3ST6Q96QI5 342 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 PNPLA7Q6ZV29 1317 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 PALLDQ8WX93 1383 aa10.57□□□□□ -0.72
CD44-211ENST00000442151 GRIN3BO60391 1043 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 EIF4A2Q14240 407 aaKnown RBP10.56□□□□□ -0.72
CD44-211ENST00000442151 QSER1Q2KHR3 1735 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 RGPD2P0DJD1 1756 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 PHKG2P15735 406 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 C1orf141Q5JVX7 400 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 DCAF5Q96JK2 942 aa10.56□□□□□ -0.72
CD44-211ENST00000442151 MAP2P11137 1827 aaKnown RBP10.55□□□□□ -0.72
CD44-211ENST00000442151 PAPPAQ13219 1627 aa10.55□□□□□ -0.72
CD44-211ENST00000442151 NCAPD2Q15021 1401 aa10.55□□□□□ -0.72
CD44-211ENST00000442151 DOT1LQ8TEK3 1739 aa10.55□□□□□ -0.72
CD44-211ENST00000442151 KLHL34Q8N239 644 aa10.55□□□□□ -0.72
CD44-211ENST00000442151 MYOM1P52179 1685 aa10.55□□□□□ -0.72
CD44-211ENST00000442151 SSFA2P28290 1259 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 COL23A1Q86Y22 540 aaPredicted RBP10.54□□□□□ -0.72
CD44-211ENST00000442151 PIGBQ92521 554 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 CD2APQ9Y5K6 639 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 LY75O60449 1722 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 LOC102724428A0A0B4J2F2 783 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 SIK1P57059 783 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 CABP4P57796 275 aa10.54□□□□□ -0.72
CD44-211ENST00000442151 IRX5P78411 483 aaPredicted RBP10.54□□□□□ -0.72
CD44-211ENST00000442151 IGSF1Q8N6C5 1336 aa10.53□□□□□ -0.72
CD44-211ENST00000442151 ATP6V1AP38606 617 aa10.53□□□□□ -0.72
CD44-211ENST00000442151 MTHFSP49914 203 aa10.52□□□□□ -0.73
CD44-211ENST00000442151 KCNQ4P56696 695 aa10.52□□□□□ -0.73
CD44-211ENST00000442151 ZNF530Q6P9A1 599 aaPredicted RBP10.52□□□□□ -0.73
CD44-211ENST00000442151 ANKRD26Q9UPS8 1709 aa10.52□□□□□ -0.73
CD44-211ENST00000442151 RC3H1Q5TC82 1133 aaKnown RBP10.51□□□□□ -0.73
CD44-211ENST00000442151 PKD1L3Q7Z443 1732 aa10.51□□□□□ -0.73
CD44-211ENST00000442151 SHANK3Q9BYB0 1731 aa10.51□□□□□ -0.73
CD44-211ENST00000442151 TRAPPC3LQ5T215 181 aa10.51□□□□□ -0.73
CD44-211ENST00000442151 RTCBQ9Y3I0 505 aaKnown RBP10.51□□□□□ -0.73
CD44-211ENST00000442151 FAM205CA6NFA0 338 aa10.5□□□□□ -0.73
CD44-211ENST00000442151 SULT6B1Q6IMI4 303 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms