RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 GNAI3P08754 354 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 FKBP5Q13451 457 aaPredicted RBP7.57□□□□□ -1.2
VPS50-205ENST00000441602 GCC1Q96CN9 775 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 PCDHB15Q9Y5E8 787 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 PHKG2P15735 406 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 EIF4A1P60842 406 aaKnown RBP7.56□□□□□ -1.2
VPS50-205ENST00000441602 IGHDP01880 384 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 IL2RBP14784 551 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 PDE4AP27815 886 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 KRT24Q2M2I5 525 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 FAM161AQ3B820 660 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 RPAP2Q8IXW5 612 aaPredicted RBP7.56□□□□□ -1.2
VPS50-205ENST00000441602 LGR6Q9HBX8 967 aa7.56□□□□□ -1.2
VPS50-205ENST00000441602 DDX58O95786 925 aaKnown RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 FLIIQ13045 1269 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 ZCRB1Q8TBF4 217 aaKnown RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 PDZRN3Q9UPQ7 1066 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 ZBTB7BO15156 539 aaPredicted RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 CABP4P57796 275 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 SLC4A10Q6U841 1118 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 STRN4Q9NRL3 753 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 DBF4Q9UBU7 674 aaPredicted RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 COL18A1P39060 1754 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 AHDC1Q5TGY3 1603 aaPredicted RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 EIF2S2P20042 333 aaKnown RBP7.55□□□□□ -1.2
VPS50-205ENST00000441602 ERICH6Q7L0X2 663 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 SLC52A2Q9HAB3 445 aa7.55□□□□□ -1.2
VPS50-205ENST00000441602 CRYBG1Q9Y4K1 1723 aa7.54□□□□□ -1.2
VPS50-205ENST00000441602 SMC5Q8IY18 1101 aa7.54□□□□□ -1.2
VPS50-205ENST00000441602 UPF2Q9HAU5 1272 aaKnown RBP7.54□□□□□ -1.2
VPS50-205ENST00000441602 HYPKQ9NX55 129 aa7.54□□□□□ -1.2
VPS50-205ENST00000441602 COL5A2P05997 1499 aaPredicted RBP7.54□□□□□ -1.2
VPS50-205ENST00000441602 CDCA7Q9BWT1 371 aaPredicted RBP7.54□□□□□ -1.2
VPS50-205ENST00000441602 BACH2Q9BYV9 841 aa7.54□□□□□ -1.2
VPS50-205ENST00000441602 PXDNLA1KZ92 1463 aa7.54□□□□□ -1.2
VPS50-205ENST00000441602 RGPD2P0DJD1 1756 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 MEGF6O75095 1541 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 GNAI2P04899 355 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 FMNL2Q96PY5 1086 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 ERVV-2B6SEH9 535 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 NECTIN2Q92692 538 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 DDRGK1Q96HY6 314 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 PARP4Q9UKK3 1724 aaKnown RBP7.53□□□□□ -1.2
VPS50-205ENST00000441602 SRCIN1Q9C0H9 1055 aa7.53□□□□□ -1.2
VPS50-205ENST00000441602 LTBP4Q8N2S1 1624 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 RGPD5Q99666 1765 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 SNRPA1P09661 255 aaKnown RBP7.52□□□□□ -1.21
VPS50-205ENST00000441602 ANKRD44Q8N8A2 993 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 CACNA1FO60840 1977 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 ZNF790Q6PG37 636 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 ROBO1Q9Y6N7 1651 aa7.52□□□□□ -1.21
VPS50-205ENST00000441602 GIGYF1O75420 1035 aaPredicted RBP7.51□□□□□ -1.21
VPS50-205ENST00000441602 UBTFL1P0CB47 393 aaPredicted RBP7.51□□□□□ -1.21
VPS50-205ENST00000441602 G2E3Q7L622 706 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 DNAAF4Q8WXU2 420 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 DDX21Q9NR30 783 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS50-205ENST00000441602 BTG4Q9NY30 223 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 COL14A1Q05707 1796 aaKnown RBP7.51□□□□□ -1.21
VPS50-205ENST00000441602 KDM3BQ7LBC6 1761 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 ERBB4Q15303 1308 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 ALDH1L1O75891 902 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 NEXNQ0ZGT2 675 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 DAXXQ9UER7 740 aaPredicted RBP7.51□□□□□ -1.21
VPS50-205ENST00000441602 ABCA3Q99758 1704 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 CYP27B1O15528 508 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 NUCB1Q02818 461 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 ANKRD45Q5TZF3 282 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 LARP1Q6PKG0 1096 aaKnown RBP7.51□□□□□ -1.21
VPS50-205ENST00000441602 CHD1LQ86WJ1 897 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 CHPF2Q9P2E5 772 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 PKD1L3Q7Z443 1732 aa7.51□□□□□ -1.21
VPS50-205ENST00000441602 RGS12O14924 1447 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 KDM6AO15550 1401 aaPredicted RBP7.5□□□□□ -1.21
VPS50-205ENST00000441602 MRC1P22897 1456 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 UBAP1LF5GYI3 381 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 C1orf115Q9H7X2 142 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 ADAMTS7Q9UKP4 1686 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 F6X3S4 739 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 NKX1-1Q15270 411 aaPredicted RBP7.5□□□□□ -1.21
VPS50-205ENST00000441602 NFATC2IPQ8NCF5 419 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 DDX54Q8TDD1 881 aaKnown RBP7.5□□□□□ -1.21
VPS50-205ENST00000441602 COL22A1Q8NFW1 1626 aaPredicted RBP7.5□□□□□ -1.21
VPS50-205ENST00000441602 KCNQ3O43525 872 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 KSR2Q6VAB6 950 aa7.5□□□□□ -1.21
VPS50-205ENST00000441602 TEX13AQ9BXU3 409 aaPredicted RBP7.5□□□□□ -1.21
VPS50-205ENST00000441602 EXOC5O00471 708 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 PIP4K2BP78356 416 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 HSP90AB4PQ58FF6 505 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 NPM2Q86SE8 214 aaKnown RBP7.49□□□□□ -1.21
VPS50-205ENST00000441602 MEIS3Q99687 375 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 DCTPP1Q9H773 170 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 TMOD3Q9NYL9 352 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 THRAP3Q9Y2W1 955 aaKnown RBP7.49□□□□□ -1.21
VPS50-205ENST00000441602 HEG1Q9ULI3 1381 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 CEP85Q6P2H3 762 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 RIC3Q7Z5B4 369 aa7.49□□□□□ -1.21
VPS50-205ENST00000441602 ATP10DQ9P241 1426 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 LNPKQ9C0E8 428 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 SCN11AQ9UI33 1791 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 PHLPP1O60346 1717 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms