RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 LINC00116Q8NCU8 138 aa27.58■■■□□ 2.01
NCKIPSD-206ENST00000439518 ATP6V1AP38606 617 aa27.55■■■□□ 2
NCKIPSD-206ENST00000439518 C1orf141Q5JVX7 400 aa27.55■■■□□ 2
NCKIPSD-206ENST00000439518 MSL1Q68DK7 614 aa27.55■■■□□ 2
NCKIPSD-206ENST00000439518 UBR3Q6ZT12 1888 aa27.55■■■□□ 2
NCKIPSD-206ENST00000439518 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.53■■■□□ 2
NCKIPSD-206ENST00000439518 CABP4P57796 275 aa27.53■■■□□ 2
NCKIPSD-206ENST00000439518 SMIM5Q71RC9 77 aa27.53■■■□□ 2
NCKIPSD-206ENST00000439518 SSFA2P28290 1259 aa27.52■■■□□ 2
NCKIPSD-206ENST00000439518 KLHL34Q8N239 644 aa27.52■■■□□ 2
NCKIPSD-206ENST00000439518 SLC4A9Q96Q91 983 aa27.52■■■□□ 2
NCKIPSD-206ENST00000439518 DIAPH1O60610 1272 aaKnown RBP27.5■■□□□ 1.99
NCKIPSD-206ENST00000439518 PHF14O94880 888 aa27.5■■□□□ 1.99
NCKIPSD-206ENST00000439518 UTRNP46939 3433 aa27.5■■□□□ 1.99
NCKIPSD-206ENST00000439518 ZNF831Q5JPB2 1677 aa27.49■■□□□ 1.99
NCKIPSD-206ENST00000439518 HMOX1P09601 288 aa27.49■■□□□ 1.99
NCKIPSD-206ENST00000439518 NLGN2Q8NFZ4 835 aa27.49■■□□□ 1.99
NCKIPSD-206ENST00000439518 GNPATO15228 680 aa27.48■■□□□ 1.99
NCKIPSD-206ENST00000439518 AKAP4Q5JQC9 854 aa27.48■■□□□ 1.99
NCKIPSD-206ENST00000439518 NFATC2IPQ8NCF5 419 aa27.48■■□□□ 1.99
NCKIPSD-206ENST00000439518 RBM42Q9BTD8 480 aaKnown RBP27.48■■□□□ 1.99
NCKIPSD-206ENST00000439518 COL3A1P02461 1466 aaPredicted RBP27.46■■□□□ 1.99
NCKIPSD-206ENST00000439518 CNGB1Q14028 1251 aaPredicted RBP27.46■■□□□ 1.99
NCKIPSD-206ENST00000439518 GPR162Q16538 588 aa27.44■■□□□ 1.98
NCKIPSD-206ENST00000439518 RC3H1Q5TC82 1133 aaKnown RBP27.44■■□□□ 1.98
NCKIPSD-206ENST00000439518 SCN11AQ9UI33 1791 aa27.44■■□□□ 1.98
NCKIPSD-206ENST00000439518 LGR6Q9HBX8 967 aa27.42■■□□□ 1.98
NCKIPSD-206ENST00000439518 CD2APQ9Y5K6 639 aa27.42■■□□□ 1.98
NCKIPSD-206ENST00000439518 CNTNAP4Q9C0A0 1308 aa27.41■■□□□ 1.98
NCKIPSD-206ENST00000439518 PTCD1O75127 700 aaKnown RBP27.41■■□□□ 1.98
NCKIPSD-206ENST00000439518 MTHFSDQ2M296 383 aaKnown RBP27.41■■□□□ 1.98
NCKIPSD-206ENST00000439518 COL5A3P25940 1745 aaPredicted RBP27.41■■□□□ 1.98
NCKIPSD-206ENST00000439518 SLC52A2Q9HAB3 445 aa27.4■■□□□ 1.98
NCKIPSD-206ENST00000439518 RTCBQ9Y3I0 505 aaKnown RBP27.4■■□□□ 1.98
NCKIPSD-206ENST00000439518 GOLGB1Q14789 3259 aaKnown RBP27.39■■□□□ 1.98
NCKIPSD-206ENST00000439518 RNMTO43148 476 aaKnown RBP27.39■■□□□ 1.98
NCKIPSD-206ENST00000439518 MRC1P22897 1456 aa27.38■■□□□ 1.97
NCKIPSD-206ENST00000439518 TRAPPC3LQ5T215 181 aa27.38■■□□□ 1.97
NCKIPSD-206ENST00000439518 RPS6KA4O75676 772 aa27.37■■□□□ 1.97
NCKIPSD-206ENST00000439518 ADRA2BP18089 450 aa27.37■■□□□ 1.97
NCKIPSD-206ENST00000439518 CHD4Q14839 1912 aa27.37■■□□□ 1.97
NCKIPSD-206ENST00000439518 U2SURPO15042 1029 aaKnown RBP27.36■■□□□ 1.97
NCKIPSD-206ENST00000439518 PELP1Q8IZL8 1130 aaKnown RBP27.36■■□□□ 1.97
NCKIPSD-206ENST00000439518 ADAMTS7Q9UKP4 1686 aa27.36■■□□□ 1.97
NCKIPSD-206ENST00000439518 MYH14Q7Z406 1995 aaKnown RBP27.35■■□□□ 1.97
NCKIPSD-206ENST00000439518 ARHGEF1Q92888 912 aaKnown RBP27.35■■□□□ 1.97
NCKIPSD-206ENST00000439518 CICQ96RK0 1608 aaPredicted RBP27.34■■□□□ 1.97
NCKIPSD-206ENST00000439518 YBX3P16989 372 aaKnown RBP eCLIP27.34■■□□□ 1.97
NCKIPSD-206ENST00000439518 CRKLP46109 303 aaKnown RBP27.33■■□□□ 1.97
NCKIPSD-206ENST00000439518 ZNF784Q8NCA9 323 aaPredicted RBP27.32■■□□□ 1.96
NCKIPSD-206ENST00000439518 TJP1Q07157 1748 aa27.32■■□□□ 1.96
NCKIPSD-206ENST00000439518 MMP10P09238 476 aa27.31■■□□□ 1.96
NCKIPSD-206ENST00000439518 PPP2R1AP30153 589 aa27.31■■□□□ 1.96
NCKIPSD-206ENST00000439518 NLGN1Q8N2Q7 840 aa27.31■■□□□ 1.96
NCKIPSD-206ENST00000439518 CFAP53Q96M91 514 aa27.31■■□□□ 1.96
NCKIPSD-206ENST00000439518 GRIN3BO60391 1043 aa27.3■■□□□ 1.96
NCKIPSD-206ENST00000439518 SLC39A6Q13433 755 aa27.3■■□□□ 1.96
NCKIPSD-206ENST00000439518 GYS1P13807 737 aa27.29■■□□□ 1.96
NCKIPSD-206ENST00000439518 RFC4P35249 363 aa27.29■■□□□ 1.96
NCKIPSD-206ENST00000439518 INTS5Q6P9B9 1019 aaKnown RBP27.29■■□□□ 1.96
NCKIPSD-206ENST00000439518 VIRMAQ69YN4 1812 aaKnown RBP27.29■■□□□ 1.96
NCKIPSD-206ENST00000439518 GAS2L2Q8NHY3 880 aa27.28■■□□□ 1.96
NCKIPSD-206ENST00000439518 KCPQ6ZWJ8 1503 aa27.27■■□□□ 1.96
NCKIPSD-206ENST00000439518 DNAJC10Q8IXB1 793 aa27.27■■□□□ 1.96
NCKIPSD-206ENST00000439518 IL17REQ8NFR9 667 aa27.26■■□□□ 1.95
NCKIPSD-206ENST00000439518 RSPH6AQ9H0K4 717 aa27.26■■□□□ 1.95
NCKIPSD-206ENST00000439518 C4AP0C0L4 1744 aa27.25■■□□□ 1.95
NCKIPSD-206ENST00000439518 GNAT3A8MTJ3 354 aa27.25■■□□□ 1.95
NCKIPSD-206ENST00000439518 PHACTR3Q96KR7 559 aa27.25■■□□□ 1.95
NCKIPSD-206ENST00000439518 CYP19A1P11511 503 aaPredicted RBP27.24■■□□□ 1.95
NCKIPSD-206ENST00000439518 CCDC87Q9NVE4 849 aa27.24■■□□□ 1.95
NCKIPSD-206ENST00000439518 NUDCQ9Y266 331 aa27.24■■□□□ 1.95
NCKIPSD-206ENST00000439518 PRKAR2BP31323 418 aa27.23■■□□□ 1.95
NCKIPSD-206ENST00000439518 USP42Q9H9J4 1324 aaKnown RBP27.22■■□□□ 1.95
NCKIPSD-206ENST00000439518 VSIG10Q8N0Z9 540 aa27.22■■□□□ 1.95
NCKIPSD-206ENST00000439518 SRP68Q9UHB9 627 aaKnown RBP27.22■■□□□ 1.95
NCKIPSD-206ENST00000439518 TEFQ10587 303 aa27.2■■□□□ 1.94
NCKIPSD-206ENST00000439518 KIF13BQ9NQT8 1826 aa27.2■■□□□ 1.94
NCKIPSD-206ENST00000439518 UBR2Q8IWV8 1755 aa27.2■■□□□ 1.94
NCKIPSD-206ENST00000439518 SOS1Q07889 1333 aaPredicted RBP27.19■■□□□ 1.94
NCKIPSD-206ENST00000439518 C10orf71Q711Q0 1435 aa27.19■■□□□ 1.94
NCKIPSD-206ENST00000439518 U2AF1L5P0DN76 240 aaPredicted RBP27.19■■□□□ 1.94
NCKIPSD-206ENST00000439518 U2AF1Q01081 240 aaKnown RBP eCLIP27.19■■□□□ 1.94
NCKIPSD-206ENST00000439518 CEMIPQ8WUJ3 1361 aa27.19■■□□□ 1.94
NCKIPSD-206ENST00000439518 FKBP8Q14318 412 aa27.18■■□□□ 1.94
NCKIPSD-206ENST00000439518 PARP3Q9Y6F1 533 aa27.18■■□□□ 1.94
NCKIPSD-206ENST00000439518 FCHSD2O94868 740 aa27.17■■□□□ 1.94
NCKIPSD-206ENST00000439518 TGFB2P61812 414 aa27.17■■□□□ 1.94
NCKIPSD-206ENST00000439518 TTC5Q8N0Z6 440 aa27.17■■□□□ 1.94
NCKIPSD-206ENST00000439518 PXDNLA1KZ92 1463 aa27.17■■□□□ 1.94
NCKIPSD-206ENST00000439518 ZNF790Q6PG37 636 aa27.16■■□□□ 1.94
NCKIPSD-206ENST00000439518 ZNF496Q96IT1 587 aaPredicted RBP27.16■■□□□ 1.94
NCKIPSD-206ENST00000439518 SIPA1L3O60292 1781 aaPredicted RBP27.16■■□□□ 1.94
NCKIPSD-206ENST00000439518 WWC3Q9ULE0 1092 aa27.15■■□□□ 1.94
NCKIPSD-206ENST00000439518 ZBTB1Q9Y2K1 713 aa27.15■■□□□ 1.94
NCKIPSD-206ENST00000439518 KIAA1551Q9HCM1 1747 aa27.15■■□□□ 1.94
NCKIPSD-206ENST00000439518 DDR1Q08345 913 aa27.13■■□□□ 1.93
NCKIPSD-206ENST00000439518 HEG1Q9ULI3 1381 aa27.12■■□□□ 1.93
NCKIPSD-206ENST00000439518 A0A0G2JLW4 131 aa27.12■■□□□ 1.93
NCKIPSD-206ENST00000439518 ZPR1O75312 459 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms