RNA–Protein interactions for RNA: ENST00000431540.7

CDH13-203, Transcript of cadherin 13, humanhuman

TSL 1 (best) BASIC

Gene CDH13, Length 831 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-203ENST00000431540 COG3Q96JB2 828 aa11.67□□□□□ -0.54
CDH13-203ENST00000431540 SOX12O15370 315 aa11.66□□□□□ -0.54
CDH13-203ENST00000431540 POLD1P28340 1107 aa11.66□□□□□ -0.54
CDH13-203ENST00000431540 PDGFDQ9GZP0 370 aaPredicted RBP11.66□□□□□ -0.54
CDH13-203ENST00000431540 A0A1W2PP64 1363 aa11.66□□□□□ -0.54
CDH13-203ENST00000431540 RTL1A6NKG5 1358 aa11.66□□□□□ -0.54
CDH13-203ENST00000431540 ANKRD36BQ8N2N9 1353 aa11.66□□□□□ -0.54
CDH13-203ENST00000431540 CDCA8Q53HL2 280 aa11.65□□□□□ -0.54
CDH13-203ENST00000431540 ZNF784Q8NCA9 323 aaPredicted RBP11.65□□□□□ -0.54
CDH13-203ENST00000431540 FLAD1Q8NFF5 587 aa11.65□□□□□ -0.54
CDH13-203ENST00000431540 ZCRB1Q8TBF4 217 aaKnown RBP11.65□□□□□ -0.54
CDH13-203ENST00000431540 NUBP1P53384 320 aa11.64□□□□□ -0.55
CDH13-203ENST00000431540 TESK2Q96S53 571 aa11.64□□□□□ -0.55
CDH13-203ENST00000431540 LRRC4BQ9NT99 713 aa11.64□□□□□ -0.55
CDH13-203ENST00000431540 TONSLQ96HA7 1378 aa11.64□□□□□ -0.55
CDH13-203ENST00000431540 HOXC9P31274 260 aa11.63□□□□□ -0.55
CDH13-203ENST00000431540 ACSBG1Q96GR2 724 aa11.63□□□□□ -0.55
CDH13-203ENST00000431540 NSD2O96028 1365 aa11.63□□□□□ -0.55
CDH13-203ENST00000431540 RGPD2P0DJD1 1756 aa11.62□□□□□ -0.55
CDH13-203ENST00000431540 GRIN3BO60391 1043 aa11.62□□□□□ -0.55
CDH13-203ENST00000431540 AMPHP49418 695 aa11.62□□□□□ -0.55
CDH13-203ENST00000431540 TIMELESSQ9UNS1 1208 aa11.62□□□□□ -0.55
CDH13-203ENST00000431540 SHANK3Q9BYB0 1731 aa11.61□□□□□ -0.55
CDH13-203ENST00000431540 TAF1LQ8IZX4 1826 aa11.61□□□□□ -0.55
CDH13-203ENST00000431540 DDX54Q8TDD1 881 aaKnown RBP11.61□□□□□ -0.55
CDH13-203ENST00000431540 TFCP2L1Q9NZI6 479 aa11.61□□□□□ -0.55
CDH13-203ENST00000431540 PLEKHG2Q9H7P9 1386 aa11.61□□□□□ -0.55
CDH13-203ENST00000431540 MAP3K19Q56UN5 1328 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 TUBGCP6Q96RT7 1819 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 ST20-MTHFSA0A0A6YYL1 179 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 PRIM1P49642 420 aaKnown RBP11.6□□□□□ -0.55
CDH13-203ENST00000431540 TMF1P82094 1093 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 ZNF827Q17R98 1081 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 DOT1LQ8TEK3 1739 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 SMG6Q86US8 1419 aaKnown RBP11.6□□□□□ -0.55
CDH13-203ENST00000431540 PNPLA7Q6ZV29 1317 aa11.6□□□□□ -0.55
CDH13-203ENST00000431540 UTRNP46939 3433 aa11.59□□□□□ -0.55
CDH13-203ENST00000431540 INSRP06213 1382 aa11.59□□□□□ -0.55
CDH13-203ENST00000431540 FYB1O15117 783 aa11.59□□□□□ -0.55
CDH13-203ENST00000431540 GPR162Q16538 588 aa11.59□□□□□ -0.55
CDH13-203ENST00000431540 RAPGEF4Q8WZA2 1011 aa11.59□□□□□ -0.55
CDH13-203ENST00000431540 ITGB4P16144 1822 aa11.58□□□□□ -0.56
CDH13-203ENST00000431540 USP47Q96K76 1375 aa11.58□□□□□ -0.56
CDH13-203ENST00000431540 C1QTNF8P60827 252 aa11.58□□□□□ -0.56
CDH13-203ENST00000431540 C3orf67Q6ZVT6 689 aa11.58□□□□□ -0.56
CDH13-203ENST00000431540 SMARCC1Q92922 1105 aaPredicted RBP11.58□□□□□ -0.56
CDH13-203ENST00000431540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.58□□□□□ -0.56
CDH13-203ENST00000431540 CD2APQ9Y5K6 639 aa11.58□□□□□ -0.56
CDH13-203ENST00000431540 MAP2P11137 1827 aaKnown RBP11.58□□□□□ -0.56
CDH13-203ENST00000431540 TATP17735 454 aaPredicted RBP11.57□□□□□ -0.56
CDH13-203ENST00000431540 NKX1-1Q15270 411 aaPredicted RBP11.57□□□□□ -0.56
CDH13-203ENST00000431540 NBPF6Q5VWK0 638 aa11.57□□□□□ -0.56
CDH13-203ENST00000431540 NBPF4Q96M43 638 aa11.57□□□□□ -0.56
CDH13-203ENST00000431540 CCNL1Q9UK58 526 aaPredicted RBP11.57□□□□□ -0.56
CDH13-203ENST00000431540 NSD3Q9BZ95 1437 aa11.57□□□□□ -0.56
CDH13-203ENST00000431540 PCDH11XQ9BZA7 1347 aa11.57□□□□□ -0.56
CDH13-203ENST00000431540 PCDH11YQ9BZA8 1340 aa11.57□□□□□ -0.56
CDH13-203ENST00000431540 C5P01031 1676 aa11.56□□□□□ -0.56
CDH13-203ENST00000431540 KIF20BQ96Q89 1820 aa11.56□□□□□ -0.56
CDH13-203ENST00000431540 PLCD3Q8N3E9 789 aa11.56□□□□□ -0.56
CDH13-203ENST00000431540 FAM212AQ96EL1 285 aa11.56□□□□□ -0.56
CDH13-203ENST00000431540 ZBTB47Q9UFB7 747 aaPredicted RBP11.56□□□□□ -0.56
CDH13-203ENST00000431540 FLT4P35916 1363 aa11.55□□□□□ -0.56
CDH13-203ENST00000431540 SYTL4Q96C24 671 aaPredicted RBP11.55□□□□□ -0.56
CDH13-203ENST00000431540 LTV1Q96GA3 475 aaPredicted RBP11.55□□□□□ -0.56
CDH13-203ENST00000431540 PDCD7Q8N8D1 485 aaKnown RBP11.54□□□□□ -0.56
CDH13-203ENST00000431540 RNF166Q96A37 237 aaPredicted RBP11.54□□□□□ -0.56
CDH13-203ENST00000431540 PKD1L3Q7Z443 1732 aa11.54□□□□□ -0.56
CDH13-203ENST00000431540 NCAPD2Q15021 1401 aa11.53□□□□□ -0.56
CDH13-203ENST00000431540 COL23A1Q86Y22 540 aaPredicted RBP11.53□□□□□ -0.56
CDH13-203ENST00000431540 MEGF6O75095 1541 aa11.53□□□□□ -0.56
CDH13-203ENST00000431540 UBR3Q6ZT12 1888 aa11.53□□□□□ -0.56
CDH13-203ENST00000431540 ZNF831Q5JPB2 1677 aa11.52□□□□□ -0.56
CDH13-203ENST00000431540 ANKRD26Q9UPS8 1709 aa11.52□□□□□ -0.56
CDH13-203ENST00000431540 L3MBTL3Q96JM7 780 aaPredicted RBP11.52□□□□□ -0.57
CDH13-203ENST00000431540 SPG7Q9UQ90 795 aa11.52□□□□□ -0.57
CDH13-203ENST00000431540 WASHC2AQ641Q2 1341 aa11.52□□□□□ -0.57
CDH13-203ENST00000431540 GIGYF1O75420 1035 aaPredicted RBP11.51□□□□□ -0.57
CDH13-203ENST00000431540 CLSPNQ9HAW4 1339 aa11.51□□□□□ -0.57
CDH13-203ENST00000431540 C4BP0C0L5 1744 aa11.5□□□□□ -0.57
CDH13-203ENST00000431540 SSFA2P28290 1259 aa11.5□□□□□ -0.57
CDH13-203ENST00000431540 RRS1Q15050 365 aaKnown RBP11.5□□□□□ -0.57
CDH13-203ENST00000431540 HSP90AB2PQ58FF8 381 aa11.5□□□□□ -0.57
CDH13-203ENST00000431540 GGNBP2Q9H3C7 697 aa11.5□□□□□ -0.57
CDH13-203ENST00000431540 GOLGB1Q14789 3259 aaKnown RBP11.5□□□□□ -0.57
CDH13-203ENST00000431540 CYP27B1O15528 508 aa11.49□□□□□ -0.57
CDH13-203ENST00000431540 PALLDQ8WX93 1383 aa11.49□□□□□ -0.57
CDH13-203ENST00000431540 KIF13BQ9NQT8 1826 aa11.48□□□□□ -0.57
CDH13-203ENST00000431540 SENP3-EIF4A1A0A087X0R7 540 aa11.47□□□□□ -0.57
CDH13-203ENST00000431540 FBLN1P23142 703 aa11.47□□□□□ -0.57
CDH13-203ENST00000431540 MPRIPQ6WCQ1 1025 aa11.47□□□□□ -0.57
CDH13-203ENST00000431540 IFNL2Q8IZJ0 200 aa11.47□□□□□ -0.57
CDH13-203ENST00000431540 NLGN2Q8NFZ4 835 aa11.47□□□□□ -0.57
CDH13-203ENST00000431540 ERVV-2B6SEH9 535 aa11.46□□□□□ -0.57
CDH13-203ENST00000431540 HSP90AB1P08238 724 aaKnown RBP11.46□□□□□ -0.57
CDH13-203ENST00000431540 RC3H1Q5TC82 1133 aaKnown RBP11.46□□□□□ -0.57
CDH13-203ENST00000431540 PIGBQ92521 554 aa11.46□□□□□ -0.57
CDH13-203ENST00000431540 AK7Q96M32 723 aa11.46□□□□□ -0.57
CDH13-203ENST00000431540 CARD14Q9BXL6 1004 aa11.46□□□□□ -0.57
CDH13-203ENST00000431540 LOC102724428A0A0B4J2F2 783 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms