RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 SLC4A9Q96Q91 983 aa22.93■■□□□ 1.26
UBE3D-204ENST00000430071 DDX10Q13206 875 aaKnown RBP22.92■■□□□ 1.26
UBE3D-204ENST00000430071 AMOTQ4VCS5 1084 aa22.92■■□□□ 1.26
UBE3D-204ENST00000430071 MSL1Q68DK7 614 aa22.92■■□□□ 1.26
UBE3D-204ENST00000430071 COL5A3P25940 1745 aaPredicted RBP22.92■■□□□ 1.26
UBE3D-204ENST00000430071 DCAF5Q96JK2 942 aa22.91■■□□□ 1.26
UBE3D-204ENST00000430071 ERVV-2B6SEH9 535 aa22.9■■□□□ 1.26
UBE3D-204ENST00000430071 DIAPH1O60610 1272 aaKnown RBP22.89■■□□□ 1.26
UBE3D-204ENST00000430071 ATP6V1AP38606 617 aa22.89■■□□□ 1.25
UBE3D-204ENST00000430071 ZNF831Q5JPB2 1677 aa22.88■■□□□ 1.25
UBE3D-204ENST00000430071 CHD4Q14839 1912 aa22.88■■□□□ 1.25
UBE3D-204ENST00000430071 PHF14O94880 888 aa22.88■■□□□ 1.25
UBE3D-204ENST00000430071 HSP90AB1P08238 724 aaKnown RBP22.88■■□□□ 1.25
UBE3D-204ENST00000430071 C1orf141Q5JVX7 400 aa22.88■■□□□ 1.25
UBE3D-204ENST00000430071 LGR6Q9HBX8 967 aa22.88■■□□□ 1.25
UBE3D-204ENST00000430071 CABP4P57796 275 aa22.87■■□□□ 1.25
UBE3D-204ENST00000430071 KLHL34Q8N239 644 aa22.87■■□□□ 1.25
UBE3D-204ENST00000430071 NFATC2IPQ8NCF5 419 aa22.87■■□□□ 1.25
UBE3D-204ENST00000430071 AK7Q96M32 723 aa22.87■■□□□ 1.25
UBE3D-204ENST00000430071 RBM42Q9BTD8 480 aaKnown RBP22.87■■□□□ 1.25
UBE3D-204ENST00000430071 UTRNP46939 3433 aa22.87■■□□□ 1.25
UBE3D-204ENST00000430071 TJP1Q07157 1748 aa22.86■■□□□ 1.25
UBE3D-204ENST00000430071 MTHFSDQ2M296 383 aaKnown RBP22.85■■□□□ 1.25
UBE3D-204ENST00000430071 ADAMTS7Q9UKP4 1686 aa22.84■■□□□ 1.25
UBE3D-204ENST00000430071 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.84■■□□□ 1.25
UBE3D-204ENST00000430071 POLD1P28340 1107 aa22.84■■□□□ 1.25
UBE3D-204ENST00000430071 NLGN2Q8NFZ4 835 aa22.83■■□□□ 1.25
UBE3D-204ENST00000430071 MAP3K5Q99683 1374 aa22.83■■□□□ 1.25
UBE3D-204ENST00000430071 U2SURPO15042 1029 aaKnown RBP22.82■■□□□ 1.24
UBE3D-204ENST00000430071 GNPATO15228 680 aa22.82■■□□□ 1.24
UBE3D-204ENST00000430071 AKAP4Q5JQC9 854 aa22.82■■□□□ 1.24
UBE3D-204ENST00000430071 GOLGB1Q14789 3259 aaKnown RBP22.82■■□□□ 1.24
UBE3D-204ENST00000430071 RNMTO43148 476 aaKnown RBP22.81■■□□□ 1.24
UBE3D-204ENST00000430071 PTCD1O75127 700 aaKnown RBP22.81■■□□□ 1.24
UBE3D-204ENST00000430071 C4AP0C0L4 1744 aa22.81■■□□□ 1.24
UBE3D-204ENST00000430071 FLAD1Q8NFF5 587 aa22.8■■□□□ 1.24
UBE3D-204ENST00000430071 PPP2R1AP30153 589 aa22.79■■□□□ 1.24
UBE3D-204ENST00000430071 SIPA1L3O60292 1781 aaPredicted RBP22.79■■□□□ 1.24
UBE3D-204ENST00000430071 YY1P25490 414 aa22.77■■□□□ 1.24
UBE3D-204ENST00000430071 SSFA2P28290 1259 aa22.77■■□□□ 1.24
UBE3D-204ENST00000430071 SLC39A6Q13433 755 aa22.77■■□□□ 1.24
UBE3D-204ENST00000430071 SLC52A2Q9HAB3 445 aa22.77■■□□□ 1.24
UBE3D-204ENST00000430071 MRC1P22897 1456 aa22.77■■□□□ 1.24
UBE3D-204ENST00000430071 CICQ96RK0 1608 aaPredicted RBP22.77■■□□□ 1.23
UBE3D-204ENST00000430071 DCAF8L1A6NGE4 600 aa22.76■■□□□ 1.23
UBE3D-204ENST00000430071 UBR2Q8IWV8 1755 aa22.76■■□□□ 1.23
UBE3D-204ENST00000430071 PHACTR3Q96KR7 559 aa22.75■■□□□ 1.23
UBE3D-204ENST00000430071 HMGB2P26583 209 aaKnown RBP22.74■■□□□ 1.23
UBE3D-204ENST00000430071 KCPQ6ZWJ8 1503 aa22.73■■□□□ 1.23
UBE3D-204ENST00000430071 DLG5Q8TDM6 1919 aa22.73■■□□□ 1.23
UBE3D-204ENST00000430071 RC3H1Q5TC82 1133 aaKnown RBP22.73■■□□□ 1.23
UBE3D-204ENST00000430071 CNTNAP4Q9C0A0 1308 aa22.73■■□□□ 1.23
UBE3D-204ENST00000430071 CRKLP46109 303 aaKnown RBP22.72■■□□□ 1.23
UBE3D-204ENST00000430071 IL17REQ8NFR9 667 aa22.72■■□□□ 1.23
UBE3D-204ENST00000430071 ARHGEF1Q92888 912 aaKnown RBP22.72■■□□□ 1.23
UBE3D-204ENST00000430071 RSPH6AQ9H0K4 717 aa22.72■■□□□ 1.23
UBE3D-204ENST00000430071 RTCBQ9Y3I0 505 aaKnown RBP22.72■■□□□ 1.23
UBE3D-204ENST00000430071 RPS6KA4O75676 772 aa22.71■■□□□ 1.23
UBE3D-204ENST00000430071 PRKAR2BP31323 418 aa22.71■■□□□ 1.23
UBE3D-204ENST00000430071 DNAJC10Q8IXB1 793 aa22.71■■□□□ 1.23
UBE3D-204ENST00000430071 PELP1Q8IZL8 1130 aaKnown RBP22.71■■□□□ 1.23
UBE3D-204ENST00000430071 GPR162Q16538 588 aa22.7■■□□□ 1.22
UBE3D-204ENST00000430071 N4BP2Q86UW6 1770 aaPredicted RBP22.7■■□□□ 1.22
UBE3D-204ENST00000430071 CFAP53Q96M91 514 aa22.7■■□□□ 1.22
UBE3D-204ENST00000430071 KIF13BQ9NQT8 1826 aa22.69■■□□□ 1.22
UBE3D-204ENST00000430071 YBX3P16989 372 aaKnown RBP eCLIP22.69■■□□□ 1.22
UBE3D-204ENST00000430071 TRAPPC3LQ5T215 181 aa22.69■■□□□ 1.22
UBE3D-204ENST00000430071 KIAA1551Q9HCM1 1747 aa22.69■■□□□ 1.22
UBE3D-204ENST00000430071 INTS5Q6P9B9 1019 aaKnown RBP22.68■■□□□ 1.22
UBE3D-204ENST00000430071 U2AF1L5P0DN76 240 aaPredicted RBP22.67■■□□□ 1.22
UBE3D-204ENST00000430071 U2AF1Q01081 240 aaKnown RBP eCLIP22.67■■□□□ 1.22
UBE3D-204ENST00000430071 GNAT3A8MTJ3 354 aa22.66■■□□□ 1.22
UBE3D-204ENST00000430071 MMP10P09238 476 aa22.66■■□□□ 1.22
UBE3D-204ENST00000430071 SRP68Q9UHB9 627 aaKnown RBP22.66■■□□□ 1.22
UBE3D-204ENST00000430071 GYS1P13807 737 aa22.65■■□□□ 1.22
UBE3D-204ENST00000430071 GAS2L2Q8NHY3 880 aa22.65■■□□□ 1.22
UBE3D-204ENST00000430071 WWC3Q9ULE0 1092 aa22.65■■□□□ 1.22
UBE3D-204ENST00000430071 CD2APQ9Y5K6 639 aa22.64■■□□□ 1.22
UBE3D-204ENST00000430071 CYP19A1P11511 503 aaPredicted RBP22.63■■□□□ 1.21
UBE3D-204ENST00000430071 NUDCQ9Y266 331 aa22.63■■□□□ 1.21
UBE3D-204ENST00000430071 KCNQ3O43525 872 aa22.63■■□□□ 1.21
UBE3D-204ENST00000430071 ADRA2BP18089 450 aa22.63■■□□□ 1.21
UBE3D-204ENST00000430071 RFC4P35249 363 aa22.63■■□□□ 1.21
UBE3D-204ENST00000430071 AFDNP55196 1824 aaKnown RBP22.62■■□□□ 1.21
UBE3D-204ENST00000430071 CCDC87Q9NVE4 849 aa22.62■■□□□ 1.21
UBE3D-204ENST00000430071 CEMIPQ8WUJ3 1361 aa22.61■■□□□ 1.21
UBE3D-204ENST00000430071 RALBP1Q15311 655 aa22.61■■□□□ 1.21
UBE3D-204ENST00000430071 BRCA1P38398 1863 aaKnown RBP22.61■■□□□ 1.21
UBE3D-204ENST00000430071 FCHSD2O94868 740 aa22.6■■□□□ 1.21
UBE3D-204ENST00000430071 TEFQ10587 303 aa22.6■■□□□ 1.21
UBE3D-204ENST00000430071 DCTN1Q14203 1278 aa22.6■■□□□ 1.21
UBE3D-204ENST00000430071 FKBP8Q14318 412 aa22.6■■□□□ 1.21
UBE3D-204ENST00000430071 ZNF496Q96IT1 587 aaPredicted RBP22.6■■□□□ 1.21
UBE3D-204ENST00000430071 PRKRIP1Q9H875 184 aaPredicted RBP22.6■■□□□ 1.21
UBE3D-204ENST00000430071 ZBTB1Q9Y2K1 713 aa22.6■■□□□ 1.21
UBE3D-204ENST00000430071 MCM10Q7L590 875 aa22.59■■□□□ 1.21
UBE3D-204ENST00000430071 NLGN1Q8N2Q7 840 aa22.59■■□□□ 1.21
UBE3D-204ENST00000430071 SOS1Q07889 1333 aaPredicted RBP22.58■■□□□ 1.21
UBE3D-204ENST00000430071 USP42Q9H9J4 1324 aaKnown RBP22.58■■□□□ 1.21
UBE3D-204ENST00000430071 ZNF790Q6PG37 636 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms