RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 LINC00116Q8NCU8 138 aa20.38■□□□□ 0.85
MSH5-208ENST00000429846 DCAF5Q96JK2 942 aa20.38■□□□□ 0.85
MSH5-208ENST00000429846 KNSTRNQ9Y448 316 aa20.38■□□□□ 0.85
MSH5-208ENST00000429846 COL5A3P25940 1745 aaPredicted RBP20.37■□□□□ 0.85
MSH5-208ENST00000429846 AMIGO3Q86WK7 504 aa20.37■□□□□ 0.85
MSH5-208ENST00000429846 ATG3Q9NT62 314 aa20.37■□□□□ 0.85
MSH5-208ENST00000429846 GNPATO15228 680 aa20.35■□□□□ 0.85
MSH5-208ENST00000429846 YBX3P16989 372 aaKnown RBP eCLIP20.35■□□□□ 0.85
MSH5-208ENST00000429846 ITPK1Q13572 414 aa20.35■□□□□ 0.85
MSH5-208ENST00000429846 KDM6AO15550 1401 aaPredicted RBP20.35■□□□□ 0.85
MSH5-208ENST00000429846 ZNF530Q6P9A1 599 aaPredicted RBP20.34■□□□□ 0.85
MSH5-208ENST00000429846 GOLGB1Q14789 3259 aaKnown RBP20.33■□□□□ 0.84
MSH5-208ENST00000429846 CICQ96RK0 1608 aaPredicted RBP20.32■□□□□ 0.84
MSH5-208ENST00000429846 C1orf141Q5JVX7 400 aa20.32■□□□□ 0.84
MSH5-208ENST00000429846 SCN11AQ9UI33 1791 aa20.31■□□□□ 0.84
MSH5-208ENST00000429846 KIF13BQ9NQT8 1826 aa20.3■□□□□ 0.84
MSH5-208ENST00000429846 ADRA2BP18089 450 aa20.3■□□□□ 0.84
MSH5-208ENST00000429846 AMER1Q5JTC6 1135 aaPredicted RBP20.3■□□□□ 0.84
MSH5-208ENST00000429846 AEBP1Q8IUX7 1158 aa20.3■□□□□ 0.84
MSH5-208ENST00000429846 RTCBQ9Y3I0 505 aaKnown RBP20.3■□□□□ 0.84
MSH5-208ENST00000429846 KIF7Q2M1P5 1343 aa20.29■□□□□ 0.84
MSH5-208ENST00000429846 CNTNAP4Q9C0A0 1308 aa20.29■□□□□ 0.84
MSH5-208ENST00000429846 CABP4P57796 275 aa20.29■□□□□ 0.84
MSH5-208ENST00000429846 C1QTNF8P60827 252 aa20.29■□□□□ 0.84
MSH5-208ENST00000429846 RC3H1Q5TC82 1133 aaKnown RBP20.29■□□□□ 0.84
MSH5-208ENST00000429846 SMIM5Q71RC9 77 aa20.29■□□□□ 0.84
MSH5-208ENST00000429846 RBM42Q9BTD8 480 aaKnown RBP20.29■□□□□ 0.84
MSH5-208ENST00000429846 IL13P35225 146 aa20.28■□□□□ 0.84
MSH5-208ENST00000429846 MTHFSP49914 203 aa20.28■□□□□ 0.84
MSH5-208ENST00000429846 SULT6B1Q6IMI4 303 aa20.28■□□□□ 0.84
MSH5-208ENST00000429846 SLC4A9Q96Q91 983 aa20.28■□□□□ 0.84
MSH5-208ENST00000429846 C4AP0C0L4 1744 aa20.27■□□□□ 0.84
MSH5-208ENST00000429846 GIGYF1O75420 1035 aaPredicted RBP20.27■□□□□ 0.84
MSH5-208ENST00000429846 TRAPPC3LQ5T215 181 aa20.27■□□□□ 0.84
MSH5-208ENST00000429846 MYH14Q7Z406 1995 aaKnown RBP20.26■□□□□ 0.83
MSH5-208ENST00000429846 MMP10P09238 476 aa20.25■□□□□ 0.83
MSH5-208ENST00000429846 NLGN1Q8N2Q7 840 aa20.25■□□□□ 0.83
MSH5-208ENST00000429846 VIRMAQ69YN4 1812 aaKnown RBP20.25■□□□□ 0.83
MSH5-208ENST00000429846 TJP1Q07157 1748 aa20.24■□□□□ 0.83
MSH5-208ENST00000429846 RPS6KA4O75676 772 aa20.24■□□□□ 0.83
MSH5-208ENST00000429846 KIAA1551Q9HCM1 1747 aa20.24■□□□□ 0.83
MSH5-208ENST00000429846 MRC1P22897 1456 aa20.24■□□□□ 0.83
MSH5-208ENST00000429846 ADCY9O60503 1353 aa20.23■□□□□ 0.83
MSH5-208ENST00000429846 AKAP4Q5JQC9 854 aa20.23■□□□□ 0.83
MSH5-208ENST00000429846 ATP10DQ9P241 1426 aa20.23■□□□□ 0.83
MSH5-208ENST00000429846 C10orf71Q711Q0 1435 aa20.22■□□□□ 0.83
MSH5-208ENST00000429846 NFATC2IPQ8NCF5 419 aa20.22■□□□□ 0.83
MSH5-208ENST00000429846 ARHGEF1Q92888 912 aaKnown RBP20.22■□□□□ 0.83
MSH5-208ENST00000429846 PXDNLA1KZ92 1463 aa20.22■□□□□ 0.83
MSH5-208ENST00000429846 SENP3-EIF4A1A0A087X0R7 540 aa20.21■□□□□ 0.83
MSH5-208ENST00000429846 RFC4P35249 363 aa20.21■□□□□ 0.83
MSH5-208ENST00000429846 ADAMTS7Q9UKP4 1686 aa20.21■□□□□ 0.83
MSH5-208ENST00000429846 PER1O15534 1290 aaPredicted RBP20.2■□□□□ 0.82
MSH5-208ENST00000429846 PTCD1O75127 700 aaKnown RBP20.2■□□□□ 0.82
MSH5-208ENST00000429846 GYS1P13807 737 aa20.2■□□□□ 0.82
MSH5-208ENST00000429846 TGFB2P61812 414 aa20.2■□□□□ 0.82
MSH5-208ENST00000429846 N4BP2Q86UW6 1770 aaPredicted RBP20.2■□□□□ 0.82
MSH5-208ENST00000429846 NPC1L1Q9UHC9 1359 aa20.2■□□□□ 0.82
MSH5-208ENST00000429846 CRKLP46109 303 aaKnown RBP20.19■□□□□ 0.82
MSH5-208ENST00000429846 BRCA1P38398 1863 aaKnown RBP20.18■□□□□ 0.82
MSH5-208ENST00000429846 SLC52A2Q9HAB3 445 aa20.18■□□□□ 0.82
MSH5-208ENST00000429846 CCDC87Q9NVE4 849 aa20.18■□□□□ 0.82
MSH5-208ENST00000429846 DIAPH1O60610 1272 aaKnown RBP20.16■□□□□ 0.82
MSH5-208ENST00000429846 GPBP1L1Q9HC44 474 aaPredicted RBP20.16■□□□□ 0.82
MSH5-208ENST00000429846 PARP3Q9Y6F1 533 aa20.16■□□□□ 0.82
MSH5-208ENST00000429846 HMOX1P09601 288 aa20.15■□□□□ 0.82
MSH5-208ENST00000429846 WWC3Q9ULE0 1092 aa20.15■□□□□ 0.82
MSH5-208ENST00000429846 USP42Q9H9J4 1324 aaKnown RBP20.15■□□□□ 0.82
MSH5-208ENST00000429846 UBR2Q8IWV8 1755 aa20.14■□□□□ 0.81
MSH5-208ENST00000429846 COL3A1P02461 1466 aaPredicted RBP20.14■□□□□ 0.81
MSH5-208ENST00000429846 RNMTO43148 476 aaKnown RBP20.14■□□□□ 0.81
MSH5-208ENST00000429846 CC2D1BQ5T0F9 858 aaKnown RBP20.14■□□□□ 0.81
MSH5-208ENST00000429846 ARFGEF1Q9Y6D6 1849 aa20.13■□□□□ 0.81
MSH5-208ENST00000429846 KCPQ6ZWJ8 1503 aa20.13■□□□□ 0.81
MSH5-208ENST00000429846 LGR6Q9HBX8 967 aa20.12■□□□□ 0.81
MSH5-208ENST00000429846 MTHFSDQ2M296 383 aaKnown RBP20.11■□□□□ 0.81
MSH5-208ENST00000429846 A0A0G2JLW4 131 aa20.1■□□□□ 0.81
MSH5-208ENST00000429846 INTS5Q6P9B9 1019 aaKnown RBP20.1■□□□□ 0.81
MSH5-208ENST00000429846 DNAJC10Q8IXB1 793 aa20.1■□□□□ 0.81
MSH5-208ENST00000429846 BCS1LQ9Y276 419 aa20.1■□□□□ 0.81
MSH5-208ENST00000429846 SOS1Q07889 1333 aaPredicted RBP20.09■□□□□ 0.81
MSH5-208ENST00000429846 VSIG10Q8N0Z9 540 aa20.09■□□□□ 0.81
MSH5-208ENST00000429846 SRP68Q9UHB9 627 aaKnown RBP20.09■□□□□ 0.81
MSH5-208ENST00000429846 ZPR1O75312 459 aa20.08■□□□□ 0.81
MSH5-208ENST00000429846 DPEP1P16444 411 aa20.08■□□□□ 0.81
MSH5-208ENST00000429846 SLC39A6Q13433 755 aa20.08■□□□□ 0.81
MSH5-208ENST00000429846 FKBP8Q14318 412 aa20.08■□□□□ 0.81
MSH5-208ENST00000429846 COL15A1P39059 1388 aa20.08■□□□□ 0.8
MSH5-208ENST00000429846 CYP19A1P11511 503 aaPredicted RBP20.07■□□□□ 0.8
MSH5-208ENST00000429846 SIPA1L3O60292 1781 aaPredicted RBP20.07■□□□□ 0.8
MSH5-208ENST00000429846 DDR1Q08345 913 aa20.06■□□□□ 0.8
MSH5-208ENST00000429846 GAS2L2Q8NHY3 880 aa20.06■□□□□ 0.8
MSH5-208ENST00000429846 ZNF526Q8TF50 670 aaPredicted RBP20.06■□□□□ 0.8
MSH5-208ENST00000429846 NRXN2Q9P2S2 1712 aa20.05■□□□□ 0.8
MSH5-208ENST00000429846 POLRMTO00411 1230 aaKnown RBP20.05■□□□□ 0.8
MSH5-208ENST00000429846 FCHSD2O94868 740 aa20.05■□□□□ 0.8
MSH5-208ENST00000429846 TTC5Q8N0Z6 440 aa20.05■□□□□ 0.8
MSH5-208ENST00000429846 PIM2Q9P1W9 311 aa20.05■□□□□ 0.8
MSH5-208ENST00000429846 AFDNP55196 1824 aaKnown RBP20.04■□□□□ 0.8
MSH5-208ENST00000429846 U2SURPO15042 1029 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms