RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 SYT17Q9BSW7 474 aa12.74□□□□□ -0.37
TRIM39-208ENST00000428555 KDM6AO15550 1401 aaPredicted RBP12.73□□□□□ -0.37
TRIM39-208ENST00000428555 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
TRIM39-208ENST00000428555 PTCD1O75127 700 aaKnown RBP12.73□□□□□ -0.37
TRIM39-208ENST00000428555 POLD1P28340 1107 aa12.73□□□□□ -0.37
TRIM39-208ENST00000428555 FLAD1Q8NFF5 587 aa12.73□□□□□ -0.37
TRIM39-208ENST00000428555 CASZ1Q86V15 1759 aa12.73□□□□□ -0.37
TRIM39-208ENST00000428555 PHF14O94880 888 aa12.72□□□□□ -0.37
TRIM39-208ENST00000428555 MSL1Q68DK7 614 aa12.72□□□□□ -0.37
TRIM39-208ENST00000428555 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.71□□□□□ -0.37
TRIM39-208ENST00000428555 DDX10Q13206 875 aaKnown RBP12.71□□□□□ -0.37
TRIM39-208ENST00000428555 PHACTR3Q96KR7 559 aa12.71□□□□□ -0.37
TRIM39-208ENST00000428555 SLC52A2Q9HAB3 445 aa12.71□□□□□ -0.37
TRIM39-208ENST00000428555 NUDCQ9Y266 331 aa12.71□□□□□ -0.37
TRIM39-208ENST00000428555 TOGARAM1Q9Y4F4 1720 aa12.71□□□□□ -0.38
TRIM39-208ENST00000428555 DCAF8L1A6NGE4 600 aa12.7□□□□□ -0.38
TRIM39-208ENST00000428555 GNPATO15228 680 aa12.7□□□□□ -0.38
TRIM39-208ENST00000428555 U2AF1L5P0DN76 240 aaPredicted RBP12.7□□□□□ -0.38
TRIM39-208ENST00000428555 U2AF1Q01081 240 aaKnown RBP eCLIP12.7□□□□□ -0.38
TRIM39-208ENST00000428555 KLHL34Q8N239 644 aa12.7□□□□□ -0.38
TRIM39-208ENST00000428555 LY75O60449 1722 aa12.7□□□□□ -0.38
TRIM39-208ENST00000428555 PRKAR2BP31323 418 aa12.69□□□□□ -0.38
TRIM39-208ENST00000428555 SLC39A6Q13433 755 aa12.69□□□□□ -0.38
TRIM39-208ENST00000428555 RSPH6AQ9H0K4 717 aa12.69□□□□□ -0.38
TRIM39-208ENST00000428555 COL3A1P02461 1466 aaPredicted RBP12.69□□□□□ -0.38
TRIM39-208ENST00000428555 GNAT3A8MTJ3 354 aa12.68□□□□□ -0.38
TRIM39-208ENST00000428555 SSFA2P28290 1259 aa12.68□□□□□ -0.38
TRIM39-208ENST00000428555 RC3H1Q5TC82 1133 aaKnown RBP12.68□□□□□ -0.38
TRIM39-208ENST00000428555 IL17REQ8NFR9 667 aa12.68□□□□□ -0.38
TRIM39-208ENST00000428555 GAS2L2Q8NHY3 880 aa12.68□□□□□ -0.38
TRIM39-208ENST00000428555 ITGB4P16144 1822 aa12.67□□□□□ -0.38
TRIM39-208ENST00000428555 TRAPPC3LQ5T215 181 aa12.67□□□□□ -0.38
TRIM39-208ENST00000428555 RTCBQ9Y3I0 505 aaKnown RBP12.67□□□□□ -0.38
TRIM39-208ENST00000428555 RPS6KA4O75676 772 aa12.66□□□□□ -0.38
TRIM39-208ENST00000428555 FCHSD2O94868 740 aa12.66□□□□□ -0.38
TRIM39-208ENST00000428555 ARHGEF1Q92888 912 aaKnown RBP12.66□□□□□ -0.38
TRIM39-208ENST00000428555 CRKLP46109 303 aaKnown RBP12.65□□□□□ -0.38
TRIM39-208ENST00000428555 DNAJC10Q8IXB1 793 aa12.65□□□□□ -0.38
TRIM39-208ENST00000428555 NLGN2Q8NFZ4 835 aa12.65□□□□□ -0.38
TRIM39-208ENST00000428555 TEFQ10587 303 aa12.64□□□□□ -0.39
TRIM39-208ENST00000428555 INTS5Q6P9B9 1019 aaKnown RBP12.64□□□□□ -0.39
TRIM39-208ENST00000428555 CNTNAP4Q9C0A0 1308 aa12.63□□□□□ -0.39
TRIM39-208ENST00000428555 C4BP0C0L5 1744 aa12.63□□□□□ -0.39
TRIM39-208ENST00000428555 RFC4P35249 363 aa12.63□□□□□ -0.39
TRIM39-208ENST00000428555 RALBP1Q15311 655 aa12.63□□□□□ -0.39
TRIM39-208ENST00000428555 MAP3K5Q99683 1374 aa12.63□□□□□ -0.39
TRIM39-208ENST00000428555 CYP19A1P11511 503 aaPredicted RBP12.62□□□□□ -0.39
TRIM39-208ENST00000428555 ADRA2BP18089 450 aa12.62□□□□□ -0.39
TRIM39-208ENST00000428555 GPR162Q16538 588 aa12.62□□□□□ -0.39
TRIM39-208ENST00000428555 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
TRIM39-208ENST00000428555 UTRNP46939 3433 aa12.62□□□□□ -0.39
TRIM39-208ENST00000428555 C5P01031 1676 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 KCNQ3O43525 872 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 MMP10P09238 476 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 YY1P25490 414 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 DCTN1Q14203 1278 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 ZNF790Q6PG37 636 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 MCM10Q7L590 875 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 TTC5Q8N0Z6 440 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 NLGN1Q8N2Q7 840 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 ZNF496Q96IT1 587 aaPredicted RBP12.61□□□□□ -0.39
TRIM39-208ENST00000428555 CCDC87Q9NVE4 849 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 CD2APQ9Y5K6 639 aa12.61□□□□□ -0.39
TRIM39-208ENST00000428555 GOLGB1Q14789 3259 aaKnown RBP12.61□□□□□ -0.39
TRIM39-208ENST00000428555 GYS1P13807 737 aa12.6□□□□□ -0.39
TRIM39-208ENST00000428555 VSIG10Q8N0Z9 540 aa12.6□□□□□ -0.39
TRIM39-208ENST00000428555 RTF1Q92541 710 aaKnown RBP12.6□□□□□ -0.39
TRIM39-208ENST00000428555 SRP68Q9UHB9 627 aaKnown RBP12.6□□□□□ -0.39
TRIM39-208ENST00000428555 TUBGCP6Q96RT7 1819 aa12.6□□□□□ -0.39
TRIM39-208ENST00000428555 QSER1Q2KHR3 1735 aa12.59□□□□□ -0.39
TRIM39-208ENST00000428555 BTBD11A6QL63 1104 aa12.59□□□□□ -0.39
TRIM39-208ENST00000428555 ZEB1P37275 1124 aaPredicted RBP12.59□□□□□ -0.39
TRIM39-208ENST00000428555 PLEKHF1Q96S99 279 aa12.59□□□□□ -0.39
TRIM39-208ENST00000428555 TAF1LQ8IZX4 1826 aa12.59□□□□□ -0.39
TRIM39-208ENST00000428555 CEMIPQ8WUJ3 1361 aa12.58□□□□□ -0.4
TRIM39-208ENST00000428555 HTATSF1O43719 755 aaKnown RBP12.58□□□□□ -0.4
TRIM39-208ENST00000428555 STARD3NLO95772 234 aa12.58□□□□□ -0.4
TRIM39-208ENST00000428555 NEFMP07197 916 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 YBX3P16989 372 aaKnown RBP eCLIP12.57□□□□□ -0.4
TRIM39-208ENST00000428555 CANXP27824 592 aaKnown RBP12.57□□□□□ -0.4
TRIM39-208ENST00000428555 FKBP8Q14318 412 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 FMNL2Q96PY5 1086 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 TEX13AQ9BXU3 409 aaPredicted RBP12.57□□□□□ -0.4
TRIM39-208ENST00000428555 MIS18AQ9NYP9 233 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 ZBTB1Q9Y2K1 713 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 MRC1P22897 1456 aa12.57□□□□□ -0.4
TRIM39-208ENST00000428555 ZPR1O75312 459 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 TAF7Q15545 349 aaPredicted RBP12.56□□□□□ -0.4
TRIM39-208ENST00000428555 USPL1Q5W0Q7 1092 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 PNNQ9H307 717 aaKnown RBP12.56□□□□□ -0.4
TRIM39-208ENST00000428555 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 PARP3Q9Y6F1 533 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 SOS1Q07889 1333 aaPredicted RBP12.56□□□□□ -0.4
TRIM39-208ENST00000428555 USP42Q9H9J4 1324 aaKnown RBP12.56□□□□□ -0.4
TRIM39-208ENST00000428555 SCN11AQ9UI33 1791 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 HEG1Q9ULI3 1381 aa12.56□□□□□ -0.4
TRIM39-208ENST00000428555 UBR3Q6ZT12 1888 aa12.55□□□□□ -0.4
TRIM39-208ENST00000428555 A1BGP04217 495 aa12.55□□□□□ -0.4
TRIM39-208ENST00000428555 NFE2L2Q16236 605 aa12.55□□□□□ -0.4
TRIM39-208ENST00000428555 MYBBP1AQ9BQG0 1328 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms